FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE9666, 1186 aa
  1>>>pF1KE9666 1186 - 1186 aa - 1186 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.3623+/-0.00107; mu= 8.3821+/- 0.064
 mean_var=152.8671+/-31.022, 0's: 0 Z-trim(108.4): 25  B-trim: 97 in 2/49
 Lambda= 0.103733
 statistics sampled from 10154 (10167) to 10154 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.657), E-opt: 0.2 (0.312), width:  16
 Scan time:  5.400

The best scores are:                                      opt bits E(32554)
CCDS32004.1 ERCC5 gene_id:2073|Hs108|chr13         (1186) 7686 1163.1       0


>>CCDS32004.1 ERCC5 gene_id:2073|Hs108|chr13              (1186 aa)
 initn: 7686 init1: 7686 opt: 7686  Z-score: 6220.9  bits: 1163.1 E(32554):    0
Smith-Waterman score: 7686; 99.8% identity (99.8% similar) in 1186 aa overlap (1-1186:1-1186)

               10        20        30        40        50        60
pF1KE9 MGVQGLWKLLECSGRQVSPEALEGKILAVDISIWLNQALKGVRDRHGNSIENPHLLTLFH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MGVQGLWKLLECSGRQVSPEALEGKILAVDISIWLNQALKGVRDRHGNSIENPHLLTLFH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 RLCKLLFFRIRPIFVFDGDAPLLKKQTLVKRRQRKDLASSDSRKTTEKLLKTFLKRQAIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 RLCKLLFFRIRPIFVFDGDAPLLKKQTLVKRRQRKDLASSDSRKTTEKLLKTFLKRQAIK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE9 TAFRSKRDEALPSLTQVRRENDLYVLPPLQEEEKHSSEEEDEKEWQERMNQKQALQEEFF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 TAFRSKRDEALPSLTQVRRENDLYVLPPLQEEEKHSSEEEDEKEWQERMNQKQALQEEFF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE9 HNPQAIDIESEDFSSLPPEVKHEILTDMKEFTKRRRTLFEAMPEESDDFSQYQLKGLLKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 HNPQAIDIESEDFSSLPPEVKHEILTDMKEFTKRRRTLFEAMPEESDDFSQYQLKGLLKK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE9 NYLNQHIEHVQKEMNQQHSGHIRRQYEDEGGFLKEVESRRVVSEDTSHYILIKGIQAKTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 NYLNQHIEHVQKEMNQQHSGHIRRQYEDEGGFLKEVESRRVVSEDTSHYILIKGIQAKTV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE9 AEVDSESLPSSSKMHGMSFDVKSSPCEKLKTEKEPDATPPSPRTLLAMQAALLGSSSEEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 AEVDSESLPSSSKMHGMSFDVKSSPCEKLKTEKEPDATPPSPRTLLAMQAALLGSSSEEE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE9 LESENRRQARGRNAPAAVDEGSISPRTLSAIKRALDDDEDVKVCAGDDVQTGGPGAEEMR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LESENRRQARGRNAPAAVDEGSISPRTLSAIKRALDDDEDVKVCAGDDVQTGGPGAEEMR
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE9 INSSTENSDEGLKVRDGKGIPFTATLASSSVNSAEEHVASTNEGREPTDSVPKEQMSLVH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 INSSTENSDEGLKVRDGKGIPFTATLASSSVNSAEEHVASTNEGREPTDSVPKEQMSLVH
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE9 VGTEAFPISDESMIKDRKDRLPLESAVVRHSDAPGLPNGRELTPASPTCTNSVSKNETHA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 VGTEAFPISDESMIKDRKDRLPLESAVVRHSDAPGLPNGRELTPASPTCTNSVSKNETHA
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE9 EVLEQQNELCPYESKFDSSLLSSDDETKCKPNSASEVIGPVSLQETSSIVSVPSEAVDNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 EVLEQQNELCPYESKFDSSLLSSDDETKCKPNSASEVIGPVSLQETSSIVSVPSEAVDNV
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE9 ENVVSFNAKEHENFLETIQEQQTTESAGQDLISIPKAVEPMEIDSEESESDGSFIEVQSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 ENVVSFNAKEHENFLETIQEQQTTESAGQDLISIPKAVEPMEIDSEESESDGSFIEVQSV
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KE9 ISDEELQAEFPETSKPPSEQGEEELVGTREGEAPAESESLLRDNSERDDVDGEPQEAEKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 ISDEELQAEFPETSKPPSEQGEEELVGTREGEAPAESESLLRDNSERDDVDGEPQEAEKD
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KE9 AEDSLHEWQDINLEELETLESNLLAQQNSLKAQKQQQERIAATVTGQMFLESQELLRLFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 AEDSLHEWQDINLEELETLESNLLAQQNSLKAQKQQQERIAATVTGQMFLESQELLRLFG
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KE9 IPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYRNFFNKNKFVEYYQYVDF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 IPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYRNFFNKNKFVEYYQYVDF
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KE9 HNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILNEFPGHGLEPLLKFSEWWHEAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 HNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILNEFPGHGLEPLLKFSEWWHEAQ
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KE9 KNPKIRPNPHDTKVKKKLRTLQLTPGFPNPAVAEAYLKPVVDDSKGSFLWGKPDLDKIRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 KNPKIRPNPHDTKVKKKLRTLQLTPGFPNPAVAEAYLKPVVDDSKGSFLWGKPDLDKIRE
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KE9 FCQRYFGWNRTKTDESLFPVLKQLDAQQTQLRIDSFFRLAQQEKEDAKRIKSQRLNRAVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 FCQRYFGWNRTKTDESLFPVLKQLDAQQTQLRIDSFFRLAQQEKEDAKRIKSQRLNRAVT
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KE9 CMLRKEKEAAASEIEAVSVAMEKEFELLDKAKRKTQKRGITNTLEESSSLKRKRLSDSKR
       :::::::::::::::::::::::::::::::: :::::::::::::::::::::::::: 
CCDS32 CMLRKEKEAAASEIEAVSVAMEKEFELLDKAKGKTQKRGITNTLEESSSLKRKRLSDSKG
             1030      1040      1050      1060      1070      1080

             1090      1100      1110      1120      1130      1140
pF1KE9 KNTCGGFLGETCLSESSDGSSSEDAESSSLMNVQRRTAAKEPKTSASDSQNSVKEAPVKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 KNTCGGFLGETCLSESSDGSSSEDAESSSLMNVQRRTAAKEPKTSASDSQNSVKEAPVKN
             1090      1100      1110      1120      1130      1140

             1150      1160      1170      1180      
pF1KE9 GGATTSSSSDSDDDGGKEKMVLVTARSVFGKKRRKLRRARGRKRKT
       ::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 GGATTSSSSDSDDDGGKEKMVLVTARSVFGKKRRKLRRARGRKRKT
             1150      1160      1170      1180      




1186 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 00:10:00 2016 done: Mon Nov  7 00:10:01 2016
 Total Scan time:  5.400 Total Display time:  0.070

Function used was FASTA [36.3.4 Apr, 2011]