FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE9665, 672 aa
  1>>>pF1KE9665 672 - 672 aa - 672 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9292+/-0.00106; mu= 15.7012+/- 0.064
 mean_var=67.1243+/-13.177, 0's: 0 Z-trim(103.0): 32  B-trim: 0 in 0/50
 Lambda= 0.156543
 statistics sampled from 7193 (7202) to 7193 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.584), E-opt: 0.2 (0.221), width:  16
 Scan time:  3.110

The best scores are:                                      opt bits E(32554)
CCDS10720.1 SHCBP1 gene_id:79801|Hs108|chr16       ( 672) 4469 1018.8       0
CCDS30955.1 SHCBP1L gene_id:81626|Hs108|chr1       ( 653)  506 123.8 7.7e-28


>>CCDS10720.1 SHCBP1 gene_id:79801|Hs108|chr16            (672 aa)
 initn: 4469 init1: 4469 opt: 4469  Z-score: 5450.2  bits: 1018.8 E(32554):    0
Smith-Waterman score: 4469; 99.7% identity (99.9% similar) in 672 aa overlap (1-672:1-672)

               10        20        30        40        50        60
pF1KE9 MADGSLTGGGLEAAAMAPERTGWAVEQELASLEKGLFQDEDSCSDCSYRDKPGSSLQSFM
       :::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::
CCDS10 MADGSLTGGGLEAAAMAPERMGWAVEQELASLEKGLFQDEDSCSDCSYRDKPGSSLQSFM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 PEGKTFFPEIFQTNQLLFYERFRAYQDYILADCKASEVQEFTAEFLEKVLEPSGWRAVWH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 PEGKTFFPEIFQTNQLLFYERFRAYQDYILADCKASEVQEFTAEFLEKVLEPSGWRAVWH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE9 TNVFKVLVEITDVDFAALKAVVRLAEPYLCDSQVSTFTMECMKELLDLKEHRLPLQELWV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 TNVFKVLVEITDVDFAALKAVVRLAEPYLCDSQVSTFTMECMKELLDLKEHRLPLQELWV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE9 VFDDSGVFDQTALAIEHVRFFYQNIWRSWDEEEEDEYDYFVRCVEPRLRLHYDILEDRVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VFDDSGVFDQTALAIEHVRFFYQNIWRSWDEEEEDEYDYFVRCVEPRLRLHYDILEDRVP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE9 SGLIVDYHNLLSQCEESYRKFLNLRSSLSNCNSDSEQENISMVEGLKLYSEMEQLKQKLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SGLIVDYHNLLSQCEESYRKFLNLRSSLSNCNSDSEQENISMVEGLKLYSEMEQLKQKLK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE9 LIENPLLRYVFGYQKNSNIQAKGVRSSGQKITHVVSSTMMAGLLRSLLTDRLCQEPGEEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LIENPLLRYVFGYQKNSNIQAKGVRSSGQKITHVVSSTMMAGLLRSLLTDRLCQEPGEEE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE9 REIQFHSDPLSAINACFEGDTVIVCPGHYVVHGTFSIADSIELEGYGLPDDIVIEKRGKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 REIQFHSDPLSAINACFEGDTVIVCPGHYVVHGTFSIADSIELEGYGLPDDIVIEKRGKG
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE9 DTFVDCTGADIKISGIKFVQHDAVEGILIVHRGKTTLENCVLQCETTGVTVRTSAEFLMK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 DTFVDCTGADIKISGIKFVQHDAVEGILIVHRGKTTLENCVLQCETTGVTVRTSAEFLMK
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE9 NSDLYGAKGAGIEIYPGSQCTLSDNGIHHCKEGILIKDFLDEHYDIPKISMVNNIIHNNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 NSDLYGAKGAGIEIYPGSQCTLSDNGIHHCKEGILIKDFLDEHYDIPKISMVNNIIHNNE
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE9 GYGVVLVKPTIFSDLQESAEDGTEENKALKIQTSGEPDVAERVDLEELIECATGKMELCA
       :::::::::::::::::.::::::::::::::::::::::::::::::::::::::::::
CCDS10 GYGVVLVKPTIFSDLQENAEDGTEENKALKIQTSGEPDVAERVDLEELIECATGKMELCA
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE9 RTDPSEQVEGNCEIVNELIAASTQKGQIKKKRLSELGITQADDNLMSQEMFVGIVGNQFK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RTDPSEQVEGNCEIVNELIAASTQKGQIKKKRLSELGITQADDNLMSQEMFVGIVGNQFK
              610       620       630       640       650       660

              670  
pF1KE9 WNGKGSFGTFLF
       ::::::::::::
CCDS10 WNGKGSFGTFLF
              670  

>>CCDS30955.1 SHCBP1L gene_id:81626|Hs108|chr1            (653 aa)
 initn: 732 init1: 398 opt: 506  Z-score: 613.3  bits: 123.8 E(32554): 7.7e-28
Smith-Waterman score: 801; 32.3% identity (61.1% similar) in 496 aa overlap (80-549:121-597)

      50        60        70        80        90       100         
pF1KE9 DKPGSSLQSFMPEGKTFFPEIFQTNQLLFYERFRAYQDYILADCKASEVQEFTAEFL-EK
                                     :.   : : .: :::: ...:  ...: ::
CCDS30 EPLLPVPEDEEEAQPLPPVCVSRMRGMWRDEKVSLYCDEVLQDCKAEDADEVMGKYLSEK
              100       110       120       130       140       150

      110       120                     130           140       150
pF1KE9 VLEPSGWRAVWHTN--VF------------KVLVEITDVDF----AALKAVVRLAEPYLC
       .   . : .::.::  ::             .:::.:   .    . .:..: .:::.  
CCDS30 LKLKDKWLGVWKTNPSVFFVKYEEASIPFVGILVEVTCEPYQDSSSRFKVTVSVAEPF--
              160       170       180       190       200          

              160       170       180       190       200       210
pF1KE9 DSQVSTFTMECMKELLDLKEHRLPLQELWVVFDDSGVFDQTALAIEHVRFFYQNIWRSWD
       .:.....  . . :.:.  :: .:: :.. :  ..  .   :::.: :::::. .::.::
CCDS30 SSNIANIPRDLVDEILEELEHSVPLLEVYPVEGQDTDIHVIALALEVVRFFYDFLWRDWD
      210       220       230       240       250       260        

              220       230       240       250       260       270
pF1KE9 EEEEDEYDYFVRCVEPRLRLHYDILEDRVPSGLIVDYHNLLSQCEESYRKFLNLRSSLSN
       .::  :   ..  .: :. :  :: .  .:. .   ... : . ...  .... .:....
CCDS30 DEESCEN--YTALIEERINLWCDIQDGTIPGPIAQRFKKTLEKYKNKRVELIEYQSNIKE
      270         280       290       300       310       320      

              280       290       300       310       320       330
pF1KE9 CNSDSEQENISMVEGLKLYSEMEQLKQKLKLIENPLLRYVFGYQKNSNIQAKGVRSSGQK
         : .:      ::  : : :. .:   ::. :.  ::    .      . :: :  :. 
CCDS30 DPSAAEA-----VECWKKYYEIVMLCGLLKMWEDLRLRVHGPFFPRILRRRKGKREFGKT
        330            340       350       360       370       380 

              340       350       360       370       380       390
pF1KE9 ITHVVSSTMMAGLLRSLLTDRLCQEPGEEEREIQFHSDPLSAINACFEGDTVIVCPGHYV
       :::.:.. : . ....: .: : :.          :.:   :.. :. :::::. ::.: 
CCDS30 ITHIVAKMMTTEMIKDLSSDTLLQQ----------HGDLDLALDNCYSGDTVIIFPGEYQ
             390       400                 410       420       430 

              400       410       420       430       440       450
pF1KE9 VHGTFSIADSIELEGYGLPDDIVIEKRGKGDTFVDCTGADIKISGIKFVQHDAVEGILIV
       . .   ..:.: ..: :  ..:.: .. . :.::   . ..:.  ....:. .:.::..:
CCDS30 AANLALLTDDIIIKGVGKREEIMITSEPSRDSFVVSKADNVKLMHLSLIQQGTVDGIVVV
             440       450       460       470       480       490 

              460       470       480       490       500       510
pF1KE9 HRGKTTLENCVLQCETTGVTVRTSAEFLMKNSDLYGAKGAGIEIYPGSQCTLSDNGIHHC
       . :. :::::.:.:: ::: : :.: . . .:.. ::.:::.:.::::   :  : ::::
CCDS30 ESGHMTLENCILKCEGTGVCVLTGAALTITDSEITGAQGAGVELYPGSIAILERNEIHHC
             500       510       520       530       540       550 

                 520           530       540       550       560   
pF1KE9 ---KEGILIKDFLD----EHYDIPKISMVNNIIHNNEGYGVVLVKPTIFSDLQESAEDGT
          . .   :. :     .    ::..:.:: :..:.:::: ...:              
CCDS30 NNLRTSNSSKSTLGGVNMKVLPAPKLKMTNNHIYSNKGYGVSILQPMEQFFIVAEEALNK
             560       570       580       590       600       610 

           570       580       590       600       610       620   
pF1KE9 EENKALKIQTSGEPDVAERVDLEELIECATGKMELCARTDPSEQVEGNCEIVNELIAAST
                                                                   
CCDS30 RASSGDKKDDKMLFKVMQNLNLEMNNNKIEANVKGDIRIVTS                  
             620       630       640       650                     




672 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 00:12:49 2016 done: Mon Nov  7 00:12:49 2016
 Total Scan time:  3.110 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]