Result of FASTA (omim) for
pFN21AE9663
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE9663, 372 aa
1>>>pF1KE9663 372 - 372 aa - 372 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.7246+/-0.000373; mu= 10.8503+/- 0.023
mean_var=105.7042+/-21.256, 0's: 0 Z-trim(116.3): 71 B-trim: 393 in 2/52
Lambda= 0.124746
statistics sampled from 27255 (27329) to 27255 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.679), E-opt: 0.2 (0.32), width: 16
Scan time: 9.250
The best scores are: opt bits E(85289)
NP_613258 (OMIM: 610054) core histone macro-H2A.1 ( 372) 2348 433.0 5.3e-121
XP_011542031 (OMIM: 610054) PREDICTED: core histon ( 372) 2348 433.0 5.3e-121
XP_011542032 (OMIM: 610054) PREDICTED: core histon ( 371) 2330 429.8 5e-120
NP_004884 (OMIM: 610054) core histone macro-H2A.1 ( 371) 2330 429.8 5e-120
NP_001035248 (OMIM: 610054) core histone macro-H2A ( 371) 2330 429.8 5e-120
NP_613075 (OMIM: 610054) core histone macro-H2A.1 ( 369) 2196 405.7 9e-113
XP_005272189 (OMIM: 610054) PREDICTED: core histon ( 368) 2178 402.4 8.5e-112
XP_011542033 (OMIM: 610054) PREDICTED: core histon ( 270) 1634 304.4 1.9e-82
NP_061119 (OMIM: 616141) core histone macro-H2A.2 ( 372) 1630 303.8 4.2e-82
XP_011542034 (OMIM: 610054) PREDICTED: core histon ( 269) 1616 301.2 1.8e-81
XP_016865557 (OMIM: 610054) PREDICTED: core histon ( 235) 1440 269.5 5.6e-72
XP_011542035 (OMIM: 610054) PREDICTED: core histon ( 252) 1290 242.5 7.9e-64
XP_016865556 (OMIM: 610054) PREDICTED: core histon ( 251) 1272 239.3 7.5e-63
XP_011542036 (OMIM: 610054) PREDICTED: core histon ( 196) 1235 232.6 6.1e-61
XP_005272191 (OMIM: 610054) PREDICTED: core histon ( 199) 1235 232.6 6.2e-61
XP_011542037 (OMIM: 610054) PREDICTED: core histon ( 195) 1217 229.3 5.8e-60
XP_005272192 (OMIM: 610054) PREDICTED: core histon ( 198) 1217 229.3 5.9e-60
XP_016865558 (OMIM: 610054) PREDICTED: core histon ( 222) 1217 229.3 6.4e-60
NP_002096 (OMIM: 601772) histone H2AX [Homo sapien ( 143) 524 104.5 1.6e-22
NP_778235 (OMIM: 615014) histone H2A type 2-B [Hom ( 130) 503 100.7 2e-21
NP_734466 (OMIM: 613499) histone H2A type 1-A [Hom ( 131) 501 100.4 2.6e-21
NP_003507 (OMIM: 142720) histone H2A type 2-A [Hom ( 130) 500 100.2 2.9e-21
NP_003508 (OMIM: 602797) histone H2A type 2-C [Hom ( 129) 496 99.5 4.7e-21
NP_254280 (OMIM: 615015) histone H2A type 3 [Homo ( 130) 496 99.5 4.7e-21
NP_003503 (OMIM: 602794) histone H2A type 1-C [Hom ( 130) 495 99.3 5.4e-21
NP_066409 (OMIM: 602792) histone H2A type 1-D [Hom ( 130) 494 99.1 6.1e-21
NP_066544 (OMIM: 602791) histone cluster 1, H2aj [ ( 128) 493 98.9 6.8e-21
NP_542163 (OMIM: 615013) histone H2A type 1-H [Hom ( 128) 493 98.9 6.8e-21
NP_003500 (OMIM: 602787) histone H2A type 1 [Homo ( 130) 493 98.9 6.9e-21
NP_003504 (OMIM: 602795) histone H2A type 1-B/E [H ( 130) 493 98.9 6.9e-21
NP_003505 (OMIM: 602796) histone H2A type 1 [Homo ( 130) 493 98.9 6.9e-21
NP_066408 (OMIM: 615012) histone H2A type 1 [Homo ( 130) 493 98.9 6.9e-21
NP_003501 (OMIM: 602788) histone H2A type 1 [Homo ( 130) 493 98.9 6.9e-21
NP_066390 (OMIM: 602786) histone H2A type 1-B/E [H ( 130) 493 98.9 6.9e-21
NP_003502 (OMIM: 602793) histone H2A type 1 [Homo ( 130) 493 98.9 6.9e-21
NP_002097 (OMIM: 142763) histone H2A.Z [Homo sapie ( 128) 392 80.7 2e-15
XP_011510782 (OMIM: 612066) PREDICTED: poly [ADP-r ( 355) 248 55.1 3e-07
XP_005247216 (OMIM: 612066) PREDICTED: poly [ADP-r ( 609) 248 55.2 4.7e-07
NP_542451 (OMIM: 300445) histone H2A-Bbd type 2/3 ( 115) 236 52.6 5.2e-07
NP_542407 (OMIM: 611567) O-acetyl-ADP-ribose deace ( 425) 232 52.2 2.6e-06
XP_011511231 (OMIM: 610028) PREDICTED: poly [ADP-r (1209) 239 53.7 2.6e-06
XP_016883166 (OMIM: 611567) PREDICTED: O-acetyl-AD ( 448) 232 52.2 2.7e-06
XP_011511230 (OMIM: 610028) PREDICTED: poly [ADP-r (1719) 239 53.8 3.5e-06
NP_060024 (OMIM: 610028) poly [ADP-ribose] polymer (1801) 239 53.8 3.6e-06
NP_054786 (OMIM: 610400) O-acetyl-ADP-ribose deace ( 325) 207 47.7 4.6e-05
XP_005273996 (OMIM: 610400) PREDICTED: O-acetyl-AD ( 334) 207 47.7 4.7e-05
>>NP_613258 (OMIM: 610054) core histone macro-H2A.1 isof (372 aa)
initn: 2348 init1: 2348 opt: 2348 Z-score: 2293.4 bits: 433.0 E(85289): 5.3e-121
Smith-Waterman score: 2348; 99.7% identity (99.7% similar) in 372 aa overlap (1-372:1-372)
10 20 30 40 50 60
pF1KE9 MSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_613 MSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE9 LELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_613 LELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE9 KGKLEAIITPPPAKKAKSPSQKKPVSKKAGGKKGARKSKKKQGEVSKAASADSTTEGTPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_613 KGKLEAIITPPPAKKAKSPSQKKPVSKKAGGKKGARKSKKKQGEVSKAASADSTTEGTPA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE9 DGFTVLSTKSLFLGQKLNLIHSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_613 DGFTVLSTKSLFLGQKLNLIHSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE9 FVEAVLELRKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGADKCEELLGKTVKNCLAL
:::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::
NP_613 FVEAVLELRKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLAL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE9 ADDKKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_613 ADDKKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIG
310 320 330 340 350 360
370
pF1KE9 IYVQEMAKLDAN
::::::::::::
NP_613 IYVQEMAKLDAN
370
>>XP_011542031 (OMIM: 610054) PREDICTED: core histone ma (372 aa)
initn: 2348 init1: 2348 opt: 2348 Z-score: 2293.4 bits: 433.0 E(85289): 5.3e-121
Smith-Waterman score: 2348; 99.7% identity (99.7% similar) in 372 aa overlap (1-372:1-372)
10 20 30 40 50 60
pF1KE9 MSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE9 LELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE9 KGKLEAIITPPPAKKAKSPSQKKPVSKKAGGKKGARKSKKKQGEVSKAASADSTTEGTPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KGKLEAIITPPPAKKAKSPSQKKPVSKKAGGKKGARKSKKKQGEVSKAASADSTTEGTPA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE9 DGFTVLSTKSLFLGQKLNLIHSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DGFTVLSTKSLFLGQKLNLIHSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE9 FVEAVLELRKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGADKCEELLGKTVKNCLAL
:::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::
XP_011 FVEAVLELRKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLAL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE9 ADDKKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ADDKKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIG
310 320 330 340 350 360
370
pF1KE9 IYVQEMAKLDAN
::::::::::::
XP_011 IYVQEMAKLDAN
370
>>XP_011542032 (OMIM: 610054) PREDICTED: core histone ma (371 aa)
initn: 1379 init1: 1379 opt: 2330 Z-score: 2275.9 bits: 429.8 E(85289): 5e-120
Smith-Waterman score: 2330; 99.5% identity (99.5% similar) in 372 aa overlap (1-372:1-371)
10 20 30 40 50 60
pF1KE9 MSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE9 LELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE9 KGKLEAIITPPPAKKAKSPSQKKPVSKKAGGKKGARKSKKKQGEVSKAASADSTTEGTPA
:::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::
XP_011 KGKLEAIITPPPAKKAKSPSQKKPVSKKAGGKKGARKSKK-QGEVSKAASADSTTEGTPA
130 140 150 160 170
190 200 210 220 230 240
pF1KE9 DGFTVLSTKSLFLGQKLNLIHSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DGFTVLSTKSLFLGQKLNLIHSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKE
180 190 200 210 220 230
250 260 270 280 290 300
pF1KE9 FVEAVLELRKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGADKCEELLGKTVKNCLAL
:::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::
XP_011 FVEAVLELRKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLAL
240 250 260 270 280 290
310 320 330 340 350 360
pF1KE9 ADDKKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ADDKKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIG
300 310 320 330 340 350
370
pF1KE9 IYVQEMAKLDAN
::::::::::::
XP_011 IYVQEMAKLDAN
360 370
>>NP_004884 (OMIM: 610054) core histone macro-H2A.1 isof (371 aa)
initn: 1379 init1: 1379 opt: 2330 Z-score: 2275.9 bits: 429.8 E(85289): 5e-120
Smith-Waterman score: 2330; 99.5% identity (99.5% similar) in 372 aa overlap (1-372:1-371)
10 20 30 40 50 60
pF1KE9 MSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE9 LELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 LELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE9 KGKLEAIITPPPAKKAKSPSQKKPVSKKAGGKKGARKSKKKQGEVSKAASADSTTEGTPA
:::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::
NP_004 KGKLEAIITPPPAKKAKSPSQKKPVSKKAGGKKGARKSKK-QGEVSKAASADSTTEGTPA
130 140 150 160 170
190 200 210 220 230 240
pF1KE9 DGFTVLSTKSLFLGQKLNLIHSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 DGFTVLSTKSLFLGQKLNLIHSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKE
180 190 200 210 220 230
250 260 270 280 290 300
pF1KE9 FVEAVLELRKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGADKCEELLGKTVKNCLAL
:::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::
NP_004 FVEAVLELRKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLAL
240 250 260 270 280 290
310 320 330 340 350 360
pF1KE9 ADDKKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 ADDKKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIG
300 310 320 330 340 350
370
pF1KE9 IYVQEMAKLDAN
::::::::::::
NP_004 IYVQEMAKLDAN
360 370
>>NP_001035248 (OMIM: 610054) core histone macro-H2A.1 i (371 aa)
initn: 1379 init1: 1379 opt: 2330 Z-score: 2275.9 bits: 429.8 E(85289): 5e-120
Smith-Waterman score: 2330; 99.5% identity (99.5% similar) in 372 aa overlap (1-372:1-371)
10 20 30 40 50 60
pF1KE9 MSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE9 LELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE9 KGKLEAIITPPPAKKAKSPSQKKPVSKKAGGKKGARKSKKKQGEVSKAASADSTTEGTPA
:::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::
NP_001 KGKLEAIITPPPAKKAKSPSQKKPVSKKAGGKKGARKSKK-QGEVSKAASADSTTEGTPA
130 140 150 160 170
190 200 210 220 230 240
pF1KE9 DGFTVLSTKSLFLGQKLNLIHSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DGFTVLSTKSLFLGQKLNLIHSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKE
180 190 200 210 220 230
250 260 270 280 290 300
pF1KE9 FVEAVLELRKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGADKCEELLGKTVKNCLAL
:::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::
NP_001 FVEAVLELRKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLAL
240 250 260 270 280 290
310 320 330 340 350 360
pF1KE9 ADDKKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ADDKKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIG
300 310 320 330 340 350
370
pF1KE9 IYVQEMAKLDAN
::::::::::::
NP_001 IYVQEMAKLDAN
360 370
>>NP_613075 (OMIM: 610054) core histone macro-H2A.1 isof (369 aa)
initn: 1284 init1: 1258 opt: 2196 Z-score: 2145.6 bits: 405.7 E(85289): 9e-113
Smith-Waterman score: 2196; 93.0% identity (97.8% similar) in 372 aa overlap (1-372:1-369)
10 20 30 40 50 60
pF1KE9 MSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_613 MSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE9 LELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_613 LELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE9 KGKLEAIITPPPAKKAKSPSQKKPVSKKAGGKKGARKSKKKQGEVSKAASADSTTEGTPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_613 KGKLEAIITPPPAKKAKSPSQKKPVSKKAGGKKGARKSKKKQGEVSKAASADSTTEGTPA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE9 DGFTVLSTKSLFLGQKLNLIHSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKE
:::::::::::::::::......: :... .:...:::.:. . ..:::::::::::
NP_613 DGFTVLSTKSLFLGQKLQVVQADI---ASIDSDAVVHPTNTDFYIGGEVGNTLEKKGGKE
190 200 210 220 230
250 260 270 280 290 300
pF1KE9 FVEAVLELRKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGADKCEELLGKTVKNCLAL
:::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::
NP_613 FVEAVLELRKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLAL
240 250 260 270 280 290
310 320 330 340 350 360
pF1KE9 ADDKKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_613 ADDKKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIG
300 310 320 330 340 350
370
pF1KE9 IYVQEMAKLDAN
::::::::::::
NP_613 IYVQEMAKLDAN
360
>>XP_005272189 (OMIM: 610054) PREDICTED: core histone ma (368 aa)
initn: 1967 init1: 1018 opt: 2178 Z-score: 2128.1 bits: 402.4 E(85289): 8.5e-112
Smith-Waterman score: 2178; 92.7% identity (97.6% similar) in 372 aa overlap (1-372:1-368)
10 20 30 40 50 60
pF1KE9 MSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE9 LELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE9 KGKLEAIITPPPAKKAKSPSQKKPVSKKAGGKKGARKSKKKQGEVSKAASADSTTEGTPA
:::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::
XP_005 KGKLEAIITPPPAKKAKSPSQKKPVSKKAGGKKGARKSKK-QGEVSKAASADSTTEGTPA
130 140 150 160 170
190 200 210 220 230 240
pF1KE9 DGFTVLSTKSLFLGQKLNLIHSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKE
:::::::::::::::::......: :... .:...:::.:. . ..:::::::::::
XP_005 DGFTVLSTKSLFLGQKLQVVQADI---ASIDSDAVVHPTNTDFYIGGEVGNTLEKKGGKE
180 190 200 210 220 230
250 260 270 280 290 300
pF1KE9 FVEAVLELRKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGADKCEELLGKTVKNCLAL
:::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::
XP_005 FVEAVLELRKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLAL
240 250 260 270 280 290
310 320 330 340 350 360
pF1KE9 ADDKKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ADDKKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIG
300 310 320 330 340 350
370
pF1KE9 IYVQEMAKLDAN
::::::::::::
XP_005 IYVQEMAKLDAN
360
>>XP_011542033 (OMIM: 610054) PREDICTED: core histone ma (270 aa)
initn: 1678 init1: 1634 opt: 1634 Z-score: 1601.0 bits: 304.4 E(85289): 1.9e-82
Smith-Waterman score: 1634; 99.2% identity (100.0% similar) in 262 aa overlap (1-262:1-262)
10 20 30 40 50 60
pF1KE9 MSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE9 LELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE9 KGKLEAIITPPPAKKAKSPSQKKPVSKKAGGKKGARKSKKKQGEVSKAASADSTTEGTPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KGKLEAIITPPPAKKAKSPSQKKPVSKKAGGKKGARKSKKKQGEVSKAASADSTTEGTPA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE9 DGFTVLSTKSLFLGQKLNLIHSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DGFTVLSTKSLFLGQKLNLIHSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE9 FVEAVLELRKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGADKCEELLGKTVKNCLAL
:::::::::::::::::::..:
XP_011 FVEAVLELRKKNGPLEVAGGTVFQSRQQLS
250 260 270
>>NP_061119 (OMIM: 616141) core histone macro-H2A.2 [Hom (372 aa)
initn: 1630 init1: 1630 opt: 1630 Z-score: 1595.0 bits: 303.8 E(85289): 4.2e-82
Smith-Waterman score: 1630; 67.7% identity (88.9% similar) in 371 aa overlap (1-371:1-371)
10 20 30 40 50 60
pF1KE9 MSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEI
::.:.:::: .: ::::.:::::::::..::.::: ::::.::::::::::.:::.:::
NP_061 MSGRSGKKKMSKLSRSARAGVIFPVGRLMRYLKKGTFKYRISVGAPVYMAAVIEYLAAEI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE9 LELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS
:::::::::::::.:..:::::::::::::::::::::::::::::: :::::::::::.
NP_061 LELAGNAARDNKKARIAPRHILLAVANDEELNQLLKGVTIASGGVLPRIHPELLAKKRGT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE9 KGKLEAIITPPPAKKAKSPSQKKPVSKKAGGKKGARKSKKKQGEVSKAASADSTTEGTPA
::: :.:..::: :.... .. : .::. . : ..:.: . .: ....::.: :.
NP_061 KGKSETILSPPPEKRGRKATSGKKGGKKSKAAKPRTSKKSKPKDSDKEGTSNSTSEDGPG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE9 DGFTVLSTKSLFLGQKLNLIHSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKE
::::.::.::: :::::.: .:.::......::.:..::.:.::::.:.:..::: ::::
NP_061 DGFTILSSKSLVLGQKLSLTQSDISHIGSMRVEGIVHPTTAEIDLKEDIGKALEKAGGKE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE9 FVEAVLELRKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGADKCEELLGKTVKNCLAL
:.:.: ::::..:::::: :::: . :: :::::::. : ::.::::: : .:.::::.
NP_061 FLETVKELRKSQGPLEVAEAAVSQSSGLAAKFVIHCHIPQWGSDKCEEQLEETIKNCLSA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE9 ADDKKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIG
:.::::::.::: . :::: ::::::::. :::::..: .. .::.:.:::.::::::::
NP_061 AEDKKLKSVAFPPFPSGRNCFPKQTAAQVTLKAISAHFDDSSASSLKNVYFLLFDSESIG
310 320 330 340 350 360
370
pF1KE9 IYVQEMAKLDAN
:::::::::::
NP_061 IYVQEMAKLDAK
370
>>XP_011542034 (OMIM: 610054) PREDICTED: core histone ma (269 aa)
initn: 1689 init1: 1018 opt: 1616 Z-score: 1583.5 bits: 301.2 E(85289): 1.8e-81
Smith-Waterman score: 1616; 98.9% identity (99.6% similar) in 262 aa overlap (1-262:1-261)
10 20 30 40 50 60
pF1KE9 MSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE9 LELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE9 KGKLEAIITPPPAKKAKSPSQKKPVSKKAGGKKGARKSKKKQGEVSKAASADSTTEGTPA
:::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::
XP_011 KGKLEAIITPPPAKKAKSPSQKKPVSKKAGGKKGARKSKK-QGEVSKAASADSTTEGTPA
130 140 150 160 170
190 200 210 220 230 240
pF1KE9 DGFTVLSTKSLFLGQKLNLIHSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DGFTVLSTKSLFLGQKLNLIHSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKE
180 190 200 210 220 230
250 260 270 280 290 300
pF1KE9 FVEAVLELRKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGADKCEELLGKTVKNCLAL
:::::::::::::::::::..:
XP_011 FVEAVLELRKKNGPLEVAGGTVFQSRQQLS
240 250 260
372 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 19:58:55 2016 done: Sun Nov 6 19:58:57 2016
Total Scan time: 9.250 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]