FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE9660, 247 aa
  1>>>pF1KE9660 247 - 247 aa - 247 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.7092+/-0.000437; mu= -0.2548+/- 0.027
 mean_var=241.9722+/-48.089, 0's: 0 Z-trim(118.1): 2  B-trim: 19 in 1/55
 Lambda= 0.082450
 statistics sampled from 30691 (30692) to 30691 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.704), E-opt: 0.2 (0.36), width:  16
 Scan time:  7.460

The best scores are:                                      opt bits E(85289)
NP_075060 (OMIM: 605607) centromere protein H [Hom ( 247) 1547 196.5 3.6e-50


>>NP_075060 (OMIM: 605607) centromere protein H [Homo sa  (247 aa)
 initn: 1547 init1: 1547 opt: 1547  Z-score: 1021.8  bits: 196.5 E(85289): 3.6e-50
Smith-Waterman score: 1547; 100.0% identity (100.0% similar) in 247 aa overlap (1-247:1-247)

               10        20        30        40        50        60
pF1KE9 MEEQPQMQDADEPADSGGEGRAGGPPQVAGAQAACSEDRMTLLLRLRAQTKQQLLEYKSM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_075 MEEQPQMQDADEPADSGGEGRAGGPPQVAGAQAACSEDRMTLLLRLRAQTKQQLLEYKSM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 VDASEEKTPEQIMQEKQIEAKIEDLENEIEEVKVAFEIKKLALDRMRLSTALKKNLEKIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_075 VDASEEKTPEQIMQEKQIEAKIEDLENEIEEVKVAFEIKKLALDRMRLSTALKKNLEKIS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE9 RQSSVLMDNMKHLLELNKLIMKSQQESWDLEEKLLDIRKKRLQLKQASESKLLEIQTEKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_075 RQSSVLMDNMKHLLELNKLIMKSQQESWDLEEKLLDIRKKRLQLKQASESKLLEIQTEKN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE9 KQKIDLDSMENSERIKIIRQNLQMEIKITTVIQHVFQNLILGSKVNWAEDPALKEIVLQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_075 KQKIDLDSMENSERIKIIRQNLQMEIKITTVIQHVFQNLILGSKVNWAEDPALKEIVLQL
              190       200       210       220       230       240

              
pF1KE9 EKNVDMM
       :::::::
NP_075 EKNVDMM
              




247 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 01:21:52 2016 done: Mon Nov  7 01:21:53 2016
 Total Scan time:  7.460 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]