FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE9641, 396 aa
  1>>>pF1KE9641 396 - 396 aa - 396 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.3322+/-0.00112; mu= -5.2466+/- 0.067
 mean_var=259.7132+/-53.451, 0's: 0 Z-trim(110.9): 22  B-trim: 93 in 1/49
 Lambda= 0.079584
 statistics sampled from 11970 (11979) to 11970 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.703), E-opt: 0.2 (0.368), width:  16
 Scan time:  3.170

The best scores are:                                      opt bits E(32554)
CCDS5266.1 WTAP gene_id:9589|Hs108|chr6            ( 396) 2533 303.9 1.7e-82
CCDS5267.1 WTAP gene_id:9589|Hs108|chr6            ( 151)  963 123.4 1.4e-28
CCDS75542.1 WTAP gene_id:9589|Hs108|chr6           ( 170)  963 123.4 1.6e-28


>>CCDS5266.1 WTAP gene_id:9589|Hs108|chr6                 (396 aa)
 initn: 2533 init1: 2533 opt: 2533  Z-score: 1594.5  bits: 303.9 E(32554): 1.7e-82
Smith-Waterman score: 2533; 100.0% identity (100.0% similar) in 396 aa overlap (1-396:1-396)

               10        20        30        40        50        60
pF1KE9 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRESEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRESEE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 KLKQQQQESARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 KLKQQQQESARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE9 FLKMKGELEQTKDKLEQAQNELSAWKFTPDSQTGKKLMAKCRMLIQENQELGRQLSQGRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 FLKMKGELEQTKDKLEQAQNELSAWKFTPDSQTGKKLMAKCRMLIQENQELGRQLSQGRI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE9 AQLEAELALQKKYSEELKSSQDELNDFIIQLDEEVEGMQSTILVLQQQLKETRQQLAQYQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 AQLEAELALQKKYSEELKSSQDELNDFIIQLDEEVEGMQSTILVLQQQLKETRQQLAQYQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE9 QQQSQASAPSTSRTTASEPVEQSEATSKDCSRLTNGPSNGSSSRQRTSGSGFHREGNTTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 QQQSQASAPSTSRTTASEPVEQSEATSKDCSRLTNGPSNGSSSRQRTSGSGFHREGNTTE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE9 DDFPSSPGNGNKSSNSSEERTGRGGSGYVNQLSAGYESVDSPTGSENSLTHQSNDTDSSH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 DDFPSSPGNGNKSSNSSEERTGRGGSGYVNQLSAGYESVDSPTGSENSLTHQSNDTDSSH
              310       320       330       340       350       360

              370       380       390      
pF1KE9 DPQEEKAVSGKGNRTVGSRHVQNGLDSSVNVQGSVL
       ::::::::::::::::::::::::::::::::::::
CCDS52 DPQEEKAVSGKGNRTVGSRHVQNGLDSSVNVQGSVL
              370       380       390      

>>CCDS5267.1 WTAP gene_id:9589|Hs108|chr6                 (151 aa)
 initn: 963 init1: 963 opt: 963  Z-score: 626.4  bits: 123.4 E(32554): 1.4e-28
Smith-Waterman score: 963; 100.0% identity (100.0% similar) in 150 aa overlap (1-150:1-150)

               10        20        30        40        50        60
pF1KE9 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRESEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRESEE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 KLKQQQQESARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 KLKQQQQESARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE9 FLKMKGELEQTKDKLEQAQNELSAWKFTPDSQTGKKLMAKCRMLIQENQELGRQLSQGRI
       ::::::::::::::::::::::::::::::                              
CCDS52 FLKMKGELEQTKDKLEQAQNELSAWKFTPDR                             
              130       140       150                              

>>CCDS75542.1 WTAP gene_id:9589|Hs108|chr6                (170 aa)
 initn: 983 init1: 963 opt: 963  Z-score: 625.7  bits: 123.4 E(32554): 1.6e-28
Smith-Waterman score: 963; 100.0% identity (100.0% similar) in 150 aa overlap (1-150:1-150)

               10        20        30        40        50        60
pF1KE9 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRESEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRESEE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 KLKQQQQESARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 KLKQQQQESARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE9 FLKMKGELEQTKDKLEQAQNELSAWKFTPDSQTGKKLMAKCRMLIQENQELGRQLSQGRI
       ::::::::::::::::::::::::::::::                              
CCDS75 FLKMKGELEQTKDKLEQAQNELSAWKFTPDRGLMASDYSEEVATSEKFPF          
              130       140       150       160       170          




396 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 06:23:23 2016 done: Sun Nov  6 06:23:23 2016
 Total Scan time:  3.170 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]