FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE9619, 418 aa
  1>>>pF1KE9619 418 - 418 aa - 418 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.0893+/-0.00105; mu= -0.1312+/- 0.063
 mean_var=185.9624+/-37.530, 0's: 0 Z-trim(109.7): 9  B-trim: 0 in 0/53
 Lambda= 0.094051
 statistics sampled from 11056 (11058) to 11056 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.699), E-opt: 0.2 (0.34), width:  16
 Scan time:  2.760

The best scores are:                                      opt bits E(32554)
CCDS3838.1 CENPU gene_id:79682|Hs108|chr4          ( 418) 2677 375.6 4.8e-104


>>CCDS3838.1 CENPU gene_id:79682|Hs108|chr4               (418 aa)
 initn: 2677 init1: 2677 opt: 2677  Z-score: 1981.4  bits: 375.6 E(32554): 4.8e-104
Smith-Waterman score: 2677; 100.0% identity (100.0% similar) in 418 aa overlap (1-418:1-418)

               10        20        30        40        50        60
pF1KE9 MAPRGRRRPRPHRSEGARRSKNTLERTHSMKDKAGQKCKPIDVFDFPDNSDVSSIGRLGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 MAPRGRRRPRPHRSEGARRSKNTLERTHSMKDKAGQKCKPIDVFDFPDNSDVSSIGRLGE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 NEKDEETYETFDPPLHSTAIYADEEEFSKHCGLSLSSTPPGKEAKRSSDTSGNEASEIES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 NEKDEETYETFDPPLHSTAIYADEEEFSKHCGLSLSSTPPGKEAKRSSDTSGNEASEIES
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE9 VKISAKKPGRKLRPISDDSESIEESDTRRKVKSAEKISTQRHEVIRTTASSELSEKPAES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 VKISAKKPGRKLRPISDDSESIEESDTRRKVKSAEKISTQRHEVIRTTASSELSEKPAES
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE9 VTSKKTGPLSAQPSVEKENLAIESQSKTQKKGKISHDKRKKSRSKAIGSDTSDIVHIWCP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 VTSKKTGPLSAQPSVEKENLAIESQSKTQKKGKISHDKRKKSRSKAIGSDTSDIVHIWCP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE9 EGMKTSDIKELNIVLPEFEKTHLEHQQRIESKVCKAAIATFYVNVKEQFIKMLKESQMLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 EGMKTSDIKELNIVLPEFEKTHLEHQQRIESKVCKAAIATFYVNVKEQFIKMLKESQMLT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE9 NLKRKNAKMISDIEKKRQRMIEVQDELLRLEPQLKQLQTKYDELKERKSSLRNAAYFLSN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 NLKRKNAKMISDIEKKRQRMIEVQDELLRLEPQLKQLQTKYDELKERKSSLRNAAYFLSN
              310       320       330       340       350       360

              370       380       390       400       410        
pF1KE9 LKQLYQDYSDVQAQEPNVKETYDSSSLPALLFKARTLLGAESHLRNINHQLEKLLDQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 LKQLYQDYSDVQAQEPNVKETYDSSSLPALLFKARTLLGAESHLRNINHQLEKLLDQG
              370       380       390       400       410        




418 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 18:43:35 2016 done: Mon Nov  7 18:43:36 2016
 Total Scan time:  2.760 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]