FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE9617, 344 aa
  1>>>pF1KE9617 344 - 344 aa - 344 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6136+/-0.000367; mu= 14.4552+/- 0.023
 mean_var=67.2637+/-13.621, 0's: 0 Z-trim(113.5): 7  B-trim: 0 in 0/53
 Lambda= 0.156381
 statistics sampled from 22804 (22811) to 22804 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.655), E-opt: 0.2 (0.267), width:  16
 Scan time:  7.960

The best scores are:                                      opt bits E(85289)
NP_201576 (OMIM: 611503) centromere protein L isof ( 344) 2315 531.2 1.2e-150
NP_001164653 (OMIM: 611503) centromere protein L i ( 344) 2315 531.2 1.2e-150
NP_001120653 (OMIM: 611503) centromere protein L i ( 390) 1404 325.7   1e-88


>>NP_201576 (OMIM: 611503) centromere protein L isoform   (344 aa)
 initn: 2315 init1: 2315 opt: 2315  Z-score: 2825.4  bits: 531.2 E(85289): 1.2e-150
Smith-Waterman score: 2315; 100.0% identity (100.0% similar) in 344 aa overlap (1-344:1-344)

               10        20        30        40        50        60
pF1KE9 MDSYSAPESTPSASSRPEDYFIGATPLQKRLESVRKQSSFILTPPRRKIPQCSQLQEDVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_201 MDSYSAPESTPSASSRPEDYFIGATPLQKRLESVRKQSSFILTPPRRKIPQCSQLQEDVD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 PQKVAFLLHKQWTLYSLTPLYKFSYSNLKEYSRLLNAFIVAEKQKGLAVEVGEDFNIKVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_201 PQKVAFLLHKQWTLYSLTPLYKFSYSNLKEYSRLLNAFIVAEKQKGLAVEVGEDFNIKVI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE9 FSTLLGMKGTQRDPEAFLVQIVSKSQLPSENREGKVLWTGWFCCVFGDSLLETVSEDFTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_201 FSTLLGMKGTQRDPEAFLVQIVSKSQLPSENREGKVLWTGWFCCVFGDSLLETVSEDFTC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE9 LPLFLANGAESNTAIIGTWFQKTFDCYFSPLAINAFNLSWMAAMWTACKMDHYVATTEFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_201 LPLFLANGAESNTAIIGTWFQKTFDCYFSPLAINAFNLSWMAAMWTACKMDHYVATTEFL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE9 WSVPCSPQSLDISFAIHPEDAKALWDSVHKTPGEVTQEEVDLFMDCLYSHFHRHFKIHLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_201 WSVPCSPQSLDISFAIHPEDAKALWDSVHKTPGEVTQEEVDLFMDCLYSHFHRHFKIHLS
              250       260       270       280       290       300

              310       320       330       340    
pF1KE9 ATRLVRVSTSVASAHTDGKIKILCHKYLIGVLAYLTELAIFQIE
       ::::::::::::::::::::::::::::::::::::::::::::
NP_201 ATRLVRVSTSVASAHTDGKIKILCHKYLIGVLAYLTELAIFQIE
              310       320       330       340    

>>NP_001164653 (OMIM: 611503) centromere protein L isofo  (344 aa)
 initn: 2315 init1: 2315 opt: 2315  Z-score: 2825.4  bits: 531.2 E(85289): 1.2e-150
Smith-Waterman score: 2315; 100.0% identity (100.0% similar) in 344 aa overlap (1-344:1-344)

               10        20        30        40        50        60
pF1KE9 MDSYSAPESTPSASSRPEDYFIGATPLQKRLESVRKQSSFILTPPRRKIPQCSQLQEDVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDSYSAPESTPSASSRPEDYFIGATPLQKRLESVRKQSSFILTPPRRKIPQCSQLQEDVD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 PQKVAFLLHKQWTLYSLTPLYKFSYSNLKEYSRLLNAFIVAEKQKGLAVEVGEDFNIKVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PQKVAFLLHKQWTLYSLTPLYKFSYSNLKEYSRLLNAFIVAEKQKGLAVEVGEDFNIKVI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE9 FSTLLGMKGTQRDPEAFLVQIVSKSQLPSENREGKVLWTGWFCCVFGDSLLETVSEDFTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FSTLLGMKGTQRDPEAFLVQIVSKSQLPSENREGKVLWTGWFCCVFGDSLLETVSEDFTC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE9 LPLFLANGAESNTAIIGTWFQKTFDCYFSPLAINAFNLSWMAAMWTACKMDHYVATTEFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LPLFLANGAESNTAIIGTWFQKTFDCYFSPLAINAFNLSWMAAMWTACKMDHYVATTEFL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE9 WSVPCSPQSLDISFAIHPEDAKALWDSVHKTPGEVTQEEVDLFMDCLYSHFHRHFKIHLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WSVPCSPQSLDISFAIHPEDAKALWDSVHKTPGEVTQEEVDLFMDCLYSHFHRHFKIHLS
              250       260       270       280       290       300

              310       320       330       340    
pF1KE9 ATRLVRVSTSVASAHTDGKIKILCHKYLIGVLAYLTELAIFQIE
       ::::::::::::::::::::::::::::::::::::::::::::
NP_001 ATRLVRVSTSVASAHTDGKIKILCHKYLIGVLAYLTELAIFQIE
              310       320       330       340    

>>NP_001120653 (OMIM: 611503) centromere protein L isofo  (390 aa)
 initn: 1404 init1: 1404 opt: 1404  Z-score: 1713.7  bits: 325.7 E(85289): 1e-88
Smith-Waterman score: 2124; 87.8% identity (87.8% similar) in 376 aa overlap (15-344:15-390)

               10        20        30        40        50        60
pF1KE9 MDSYSAPESTPSASSRPEDYFIGATPLQKRLESVRKQSSFILTPPRRKIPQCSQLQEDVD
                     ::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDSYSAPESTPSASSRPEDYFIGATPLQKRLESVRKQSSFILTPPRRKIPQCSQLQEDVD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 PQKVAFLLHKQWTLYSLTPLYKFSYSNLKEYSRLLNAFIVAEKQKGLAVEVGEDFNIKVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PQKVAFLLHKQWTLYSLTPLYKFSYSNLKEYSRLLNAFIVAEKQKGLAVEVGEDFNIKVI
               70        80        90       100       110       120

              130       140                                        
pF1KE9 FSTLLGMKGTQRDPEAFLVQ----------------------------------------
       ::::::::::::::::::::                                        
NP_001 FSTLLGMKGTQRDPEAFLVQGLILSPRLEYSGTILVDCNLCLLGSSDPSTLAFQVAGTAG
              130       140       150       160       170       180

                    150       160       170       180       190    
pF1KE9 ------IVSKSQLPSENREGKVLWTGWFCCVFGDSLLETVSEDFTCLPLFLANGAESNTA
             ::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ACHHTRIVSKSQLPSENREGKVLWTGWFCCVFGDSLLETVSEDFTCLPLFLANGAESNTA
              190       200       210       220       230       240

          200       210       220       230       240       250    
pF1KE9 IIGTWFQKTFDCYFSPLAINAFNLSWMAAMWTACKMDHYVATTEFLWSVPCSPQSLDISF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IIGTWFQKTFDCYFSPLAINAFNLSWMAAMWTACKMDHYVATTEFLWSVPCSPQSLDISF
              250       260       270       280       290       300

          260       270       280       290       300       310    
pF1KE9 AIHPEDAKALWDSVHKTPGEVTQEEVDLFMDCLYSHFHRHFKIHLSATRLVRVSTSVASA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AIHPEDAKALWDSVHKTPGEVTQEEVDLFMDCLYSHFHRHFKIHLSATRLVRVSTSVASA
              310       320       330       340       350       360

          320       330       340    
pF1KE9 HTDGKIKILCHKYLIGVLAYLTELAIFQIE
       ::::::::::::::::::::::::::::::
NP_001 HTDGKIKILCHKYLIGVLAYLTELAIFQIE
              370       380       390




344 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 06:24:01 2016 done: Sun Nov  6 06:24:02 2016
 Total Scan time:  7.960 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]