FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE9617, 344 aa
  1>>>pF1KE9617 344 - 344 aa - 344 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7291+/-0.000802; mu= 13.5412+/- 0.048
 mean_var=63.4466+/-12.645, 0's: 0 Z-trim(106.6): 11  B-trim: 0 in 0/52
 Lambda= 0.161016
 statistics sampled from 9056 (9062) to 9056 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.667), E-opt: 0.2 (0.278), width:  16
 Scan time:  2.490

The best scores are:                                      opt bits E(32554)
CCDS30938.1 CENPL gene_id:91687|Hs108|chr1         ( 344) 2315 546.4 1.3e-155
CCDS44277.1 CENPL gene_id:91687|Hs108|chr1         ( 390) 1404 334.8 7.3e-92


>>CCDS30938.1 CENPL gene_id:91687|Hs108|chr1              (344 aa)
 initn: 2315 init1: 2315 opt: 2315  Z-score: 2907.3  bits: 546.4 E(32554): 1.3e-155
Smith-Waterman score: 2315; 100.0% identity (100.0% similar) in 344 aa overlap (1-344:1-344)

               10        20        30        40        50        60
pF1KE9 MDSYSAPESTPSASSRPEDYFIGATPLQKRLESVRKQSSFILTPPRRKIPQCSQLQEDVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MDSYSAPESTPSASSRPEDYFIGATPLQKRLESVRKQSSFILTPPRRKIPQCSQLQEDVD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 PQKVAFLLHKQWTLYSLTPLYKFSYSNLKEYSRLLNAFIVAEKQKGLAVEVGEDFNIKVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 PQKVAFLLHKQWTLYSLTPLYKFSYSNLKEYSRLLNAFIVAEKQKGLAVEVGEDFNIKVI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE9 FSTLLGMKGTQRDPEAFLVQIVSKSQLPSENREGKVLWTGWFCCVFGDSLLETVSEDFTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 FSTLLGMKGTQRDPEAFLVQIVSKSQLPSENREGKVLWTGWFCCVFGDSLLETVSEDFTC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE9 LPLFLANGAESNTAIIGTWFQKTFDCYFSPLAINAFNLSWMAAMWTACKMDHYVATTEFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 LPLFLANGAESNTAIIGTWFQKTFDCYFSPLAINAFNLSWMAAMWTACKMDHYVATTEFL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE9 WSVPCSPQSLDISFAIHPEDAKALWDSVHKTPGEVTQEEVDLFMDCLYSHFHRHFKIHLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 WSVPCSPQSLDISFAIHPEDAKALWDSVHKTPGEVTQEEVDLFMDCLYSHFHRHFKIHLS
              250       260       270       280       290       300

              310       320       330       340    
pF1KE9 ATRLVRVSTSVASAHTDGKIKILCHKYLIGVLAYLTELAIFQIE
       ::::::::::::::::::::::::::::::::::::::::::::
CCDS30 ATRLVRVSTSVASAHTDGKIKILCHKYLIGVLAYLTELAIFQIE
              310       320       330       340    

>>CCDS44277.1 CENPL gene_id:91687|Hs108|chr1              (390 aa)
 initn: 1404 init1: 1404 opt: 1404  Z-score: 1762.7  bits: 334.8 E(32554): 7.3e-92
Smith-Waterman score: 2124; 87.8% identity (87.8% similar) in 376 aa overlap (15-344:15-390)

               10        20        30        40        50        60
pF1KE9 MDSYSAPESTPSASSRPEDYFIGATPLQKRLESVRKQSSFILTPPRRKIPQCSQLQEDVD
                     ::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MDSYSAPESTPSASSRPEDYFIGATPLQKRLESVRKQSSFILTPPRRKIPQCSQLQEDVD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 PQKVAFLLHKQWTLYSLTPLYKFSYSNLKEYSRLLNAFIVAEKQKGLAVEVGEDFNIKVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 PQKVAFLLHKQWTLYSLTPLYKFSYSNLKEYSRLLNAFIVAEKQKGLAVEVGEDFNIKVI
               70        80        90       100       110       120

              130       140                                        
pF1KE9 FSTLLGMKGTQRDPEAFLVQ----------------------------------------
       ::::::::::::::::::::                                        
CCDS44 FSTLLGMKGTQRDPEAFLVQGLILSPRLEYSGTILVDCNLCLLGSSDPSTLAFQVAGTAG
              130       140       150       160       170       180

                    150       160       170       180       190    
pF1KE9 ------IVSKSQLPSENREGKVLWTGWFCCVFGDSLLETVSEDFTCLPLFLANGAESNTA
             ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 ACHHTRIVSKSQLPSENREGKVLWTGWFCCVFGDSLLETVSEDFTCLPLFLANGAESNTA
              190       200       210       220       230       240

          200       210       220       230       240       250    
pF1KE9 IIGTWFQKTFDCYFSPLAINAFNLSWMAAMWTACKMDHYVATTEFLWSVPCSPQSLDISF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 IIGTWFQKTFDCYFSPLAINAFNLSWMAAMWTACKMDHYVATTEFLWSVPCSPQSLDISF
              250       260       270       280       290       300

          260       270       280       290       300       310    
pF1KE9 AIHPEDAKALWDSVHKTPGEVTQEEVDLFMDCLYSHFHRHFKIHLSATRLVRVSTSVASA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 AIHPEDAKALWDSVHKTPGEVTQEEVDLFMDCLYSHFHRHFKIHLSATRLVRVSTSVASA
              310       320       330       340       350       360

          320       330       340    
pF1KE9 HTDGKIKILCHKYLIGVLAYLTELAIFQIE
       ::::::::::::::::::::::::::::::
CCDS44 HTDGKIKILCHKYLIGVLAYLTELAIFQIE
              370       380       390




344 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 06:24:01 2016 done: Sun Nov  6 06:24:01 2016
 Total Scan time:  2.490 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]