FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE9616, 356 aa
  1>>>pF1KE9616 356 - 356 aa - 356 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.8523+/-0.000964; mu= 9.6192+/- 0.058
 mean_var=107.1285+/-21.203, 0's: 0 Z-trim(107.4): 17  B-trim: 46 in 1/51
 Lambda= 0.123914
 statistics sampled from 9519 (9527) to 9519 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.673), E-opt: 0.2 (0.293), width:  16
 Scan time:  2.890

The best scores are:                                      opt bits E(32554)
CCDS13286.1 DSN1 gene_id:79980|Hs108|chr20         ( 356) 2305 422.7 2.3e-118
CCDS46597.1 DSN1 gene_id:79980|Hs108|chr20         ( 340) 2207 405.2 4.2e-113
CCDS46596.1 DSN1 gene_id:79980|Hs108|chr20         ( 249) 1537 285.3 3.7e-77


>>CCDS13286.1 DSN1 gene_id:79980|Hs108|chr20              (356 aa)
 initn: 2305 init1: 2305 opt: 2305  Z-score: 2238.4  bits: 422.7 E(32554): 2.3e-118
Smith-Waterman score: 2305; 100.0% identity (100.0% similar) in 356 aa overlap (1-356:1-356)

               10        20        30        40        50        60
pF1KE9 MTSVTRSEIIDEKGPVMSKTHDHQLESSLSPVEVFAKTSASLEMNQGVSEERIHLGSSPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MTSVTRSEIIDEKGPVMSKTHDHQLESSLSPVEVFAKTSASLEMNQGVSEERIHLGSSPK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 KGGNCDLSHQERLQSKSLHLSPQEQSASYQDRRQSWRRASMKETNRRKSLHPIHQGITEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KGGNCDLSHQERLQSKSLHLSPQEQSASYQDRRQSWRRASMKETNRRKSLHPIHQGITEL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE9 SRSISVDLAESKRLGCLLLSSFQFSIQKLEPFLRDTKGFSLESFRAKASSLSEELKHFAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SRSISVDLAESKRLGCLLLSSFQFSIQKLEPFLRDTKGFSLESFRAKASSLSEELKHFAD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE9 GLETDGTLQKCFEDSNGKASDFSLEASVAEMKEYITKFSLERQTWDQLLLHYQQEAKEIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GLETDGTLQKCFEDSNGKASDFSLEASVAEMKEYITKFSLERQTWDQLLLHYQQEAKEIL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE9 SRGSTEAKITEVKVEPMTYLGSSQNEVLNTKPDYQKILQNQSKVFDCMELVMDELQGSVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SRGSTEAKITEVKVEPMTYLGSSQNEVLNTKPDYQKILQNQSKVFDCMELVMDELQGSVK
              250       260       270       280       290       300

              310       320       330       340       350      
pF1KE9 QLQAFMDESTQCFQKVSVQLGKRSMQQLDPSPARKLLKLQLQNPPAIHGSGSGSCQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 QLQAFMDESTQCFQKVSVQLGKRSMQQLDPSPARKLLKLQLQNPPAIHGSGSGSCQ
              310       320       330       340       350      

>>CCDS46597.1 DSN1 gene_id:79980|Hs108|chr20              (340 aa)
 initn: 2207 init1: 2207 opt: 2207  Z-score: 2144.0  bits: 405.2 E(32554): 4.2e-113
Smith-Waterman score: 2207; 100.0% identity (100.0% similar) in 340 aa overlap (17-356:1-340)

               10        20        30        40        50        60
pF1KE9 MTSVTRSEIIDEKGPVMSKTHDHQLESSLSPVEVFAKTSASLEMNQGVSEERIHLGSSPK
                       ::::::::::::::::::::::::::::::::::::::::::::
CCDS46                 MSKTHDHQLESSLSPVEVFAKTSASLEMNQGVSEERIHLGSSPK
                               10        20        30        40    

               70        80        90       100       110       120
pF1KE9 KGGNCDLSHQERLQSKSLHLSPQEQSASYQDRRQSWRRASMKETNRRKSLHPIHQGITEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 KGGNCDLSHQERLQSKSLHLSPQEQSASYQDRRQSWRRASMKETNRRKSLHPIHQGITEL
           50        60        70        80        90       100    

              130       140       150       160       170       180
pF1KE9 SRSISVDLAESKRLGCLLLSSFQFSIQKLEPFLRDTKGFSLESFRAKASSLSEELKHFAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 SRSISVDLAESKRLGCLLLSSFQFSIQKLEPFLRDTKGFSLESFRAKASSLSEELKHFAD
          110       120       130       140       150       160    

              190       200       210       220       230       240
pF1KE9 GLETDGTLQKCFEDSNGKASDFSLEASVAEMKEYITKFSLERQTWDQLLLHYQQEAKEIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 GLETDGTLQKCFEDSNGKASDFSLEASVAEMKEYITKFSLERQTWDQLLLHYQQEAKEIL
          170       180       190       200       210       220    

              250       260       270       280       290       300
pF1KE9 SRGSTEAKITEVKVEPMTYLGSSQNEVLNTKPDYQKILQNQSKVFDCMELVMDELQGSVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 SRGSTEAKITEVKVEPMTYLGSSQNEVLNTKPDYQKILQNQSKVFDCMELVMDELQGSVK
          230       240       250       260       270       280    

              310       320       330       340       350      
pF1KE9 QLQAFMDESTQCFQKVSVQLGKRSMQQLDPSPARKLLKLQLQNPPAIHGSGSGSCQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 QLQAFMDESTQCFQKVSVQLGKRSMQQLDPSPARKLLKLQLQNPPAIHGSGSGSCQ
          290       300       310       320       330       340

>>CCDS46596.1 DSN1 gene_id:79980|Hs108|chr20              (249 aa)
 initn: 1537 init1: 1537 opt: 1537  Z-score: 1498.7  bits: 285.3 E(32554): 3.7e-77
Smith-Waterman score: 1537; 99.6% identity (99.6% similar) in 240 aa overlap (117-356:10-249)

         90       100       110       120       130       140      
pF1KE9 ASYQDRRQSWRRASMKETNRRKSLHPIHQGITELSRSISVDLAESKRLGCLLLSSFQFSI
                                     : ::::::::::::::::::::::::::::
CCDS46                      MTSVTRSEIIDELSRSISVDLAESKRLGCLLLSSFQFSI
                                    10        20        30         

        150       160       170       180       190       200      
pF1KE9 QKLEPFLRDTKGFSLESFRAKASSLSEELKHFADGLETDGTLQKCFEDSNGKASDFSLEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 QKLEPFLRDTKGFSLESFRAKASSLSEELKHFADGLETDGTLQKCFEDSNGKASDFSLEA
      40        50        60        70        80        90         

        210       220       230       240       250       260      
pF1KE9 SVAEMKEYITKFSLERQTWDQLLLHYQQEAKEILSRGSTEAKITEVKVEPMTYLGSSQNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 SVAEMKEYITKFSLERQTWDQLLLHYQQEAKEILSRGSTEAKITEVKVEPMTYLGSSQNE
     100       110       120       130       140       150         

        270       280       290       300       310       320      
pF1KE9 VLNTKPDYQKILQNQSKVFDCMELVMDELQGSVKQLQAFMDESTQCFQKVSVQLGKRSMQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 VLNTKPDYQKILQNQSKVFDCMELVMDELQGSVKQLQAFMDESTQCFQKVSVQLGKRSMQ
     160       170       180       190       200       210         

        330       340       350      
pF1KE9 QLDPSPARKLLKLQLQNPPAIHGSGSGSCQ
       ::::::::::::::::::::::::::::::
CCDS46 QLDPSPARKLLKLQLQNPPAIHGSGSGSCQ
     220       230       240         




356 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 06:24:38 2016 done: Sun Nov  6 06:24:38 2016
 Total Scan time:  2.890 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]