FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE9611, 300 aa
  1>>>pF1KE9611 300 - 300 aa - 300 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1984+/-0.000905; mu= 11.0727+/- 0.054
 mean_var=79.4521+/-15.966, 0's: 0 Z-trim(106.5): 8  B-trim: 0 in 0/50
 Lambda= 0.143887
 statistics sampled from 9004 (9008) to 9004 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.657), E-opt: 0.2 (0.277), width:  16
 Scan time:  1.680

The best scores are:                                      opt bits E(32554)
CCDS1714.1 CENPO gene_id:79172|Hs108|chr2          ( 300) 1956 415.5 2.4e-116
CCDS56113.1 CENPO gene_id:79172|Hs108|chr2         ( 294) 1851 393.7 8.5e-110


>>CCDS1714.1 CENPO gene_id:79172|Hs108|chr2               (300 aa)
 initn: 1956 init1: 1956 opt: 1956  Z-score: 2202.3  bits: 415.5 E(32554): 2.4e-116
Smith-Waterman score: 1956; 99.7% identity (100.0% similar) in 300 aa overlap (1-300:1-300)

               10        20        30        40        50        60
pF1KE9 MEQANPLRPDGESKGGVLAHLERLETQVSRSRKRSEELQSVQAQEGALGTKIHKLRRLRD
       :::::::::::::::::::::::::::::::::.::::::::::::::::::::::::::
CCDS17 MEQANPLRPDGESKGGVLAHLERLETQVSRSRKQSEELQSVQAQEGALGTKIHKLRRLRD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 ELRAVVRHRRASVKACIANVEPNQTVEINEQEALEEKLENVKAILQAYHFTGLSGKLTSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 ELRAVVRHRRASVKACIANVEPNQTVEINEQEALEEKLENVKAILQAYHFTGLSGKLTSR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE9 GVCVCISTAFEGNLLDSYFVDLVIQKPLRIHHHSVPVFIPLEEIAAKYLQTNIQHFLFSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 GVCVCISTAFEGNLLDSYFVDLVIQKPLRIHHHSVPVFIPLEEIAAKYLQTNIQHFLFSL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE9 CEYLNAYSGRKYQADRLQSDFAALLTGPLQRNPLCNLLSFTYKLDPGGQSFPFCARLLYK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 CEYLNAYSGRKYQADRLQSDFAALLTGPLQRNPLCNLLSFTYKLDPGGQSFPFCARLLYK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE9 DLTATLPTDVTVTCQGVEVLSTSWEEQRASHETLFCTKPLHQVFASFTRKGEKLDMSLVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 DLTATLPTDVTVTCQGVEVLSTSWEEQRASHETLFCTKPLHQVFASFTRKGEKLDMSLVS
              250       260       270       280       290       300

>>CCDS56113.1 CENPO gene_id:79172|Hs108|chr2              (294 aa)
 initn: 1851 init1: 1851 opt: 1851  Z-score: 2084.7  bits: 393.7 E(32554): 8.5e-110
Smith-Waterman score: 1851; 99.6% identity (100.0% similar) in 285 aa overlap (16-300:10-294)

               10        20        30        40        50        60
pF1KE9 MEQANPLRPDGESKGGVLAHLERLETQVSRSRKRSEELQSVQAQEGALGTKIHKLRRLRD
                      ::::::::::::::::::.::::::::::::::::::::::::::
CCDS56       MAGILASGLGVLAHLERLETQVSRSRKQSEELQSVQAQEGALGTKIHKLRRLRD
                     10        20        30        40        50    

               70        80        90       100       110       120
pF1KE9 ELRAVVRHRRASVKACIANVEPNQTVEINEQEALEEKLENVKAILQAYHFTGLSGKLTSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 ELRAVVRHRRASVKACIANVEPNQTVEINEQEALEEKLENVKAILQAYHFTGLSGKLTSR
           60        70        80        90       100       110    

              130       140       150       160       170       180
pF1KE9 GVCVCISTAFEGNLLDSYFVDLVIQKPLRIHHHSVPVFIPLEEIAAKYLQTNIQHFLFSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 GVCVCISTAFEGNLLDSYFVDLVIQKPLRIHHHSVPVFIPLEEIAAKYLQTNIQHFLFSL
          120       130       140       150       160       170    

              190       200       210       220       230       240
pF1KE9 CEYLNAYSGRKYQADRLQSDFAALLTGPLQRNPLCNLLSFTYKLDPGGQSFPFCARLLYK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 CEYLNAYSGRKYQADRLQSDFAALLTGPLQRNPLCNLLSFTYKLDPGGQSFPFCARLLYK
          180       190       200       210       220       230    

              250       260       270       280       290       300
pF1KE9 DLTATLPTDVTVTCQGVEVLSTSWEEQRASHETLFCTKPLHQVFASFTRKGEKLDMSLVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 DLTATLPTDVTVTCQGVEVLSTSWEEQRASHETLFCTKPLHQVFASFTRKGEKLDMSLVS
          240       250       260       270       280       290    




300 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 06:26:35 2016 done: Sun Nov  6 06:26:35 2016
 Total Scan time:  1.680 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]