FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE9607, 268 aa
  1>>>pF1KE9607 268 - 268 aa - 268 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.1957+/-0.000467; mu= 2.1134+/- 0.029
 mean_var=180.5088+/-35.595, 0's: 0 Z-trim(115.0): 22  B-trim: 0 in 0/52
 Lambda= 0.095461
 statistics sampled from 25169 (25185) to 25169 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.65), E-opt: 0.2 (0.295), width:  16
 Scan time:  6.810

The best scores are:                                      opt bits E(85289)
NP_060602 (OMIM: 611506) centromere protein Q [Hom ( 268) 1663 241.2 1.6e-63
XP_005249262 (OMIM: 611506) PREDICTED: centromere  ( 268) 1663 241.2 1.6e-63
XP_011513025 (OMIM: 611506) PREDICTED: centromere  ( 271) 1457 212.8 5.5e-55


>>NP_060602 (OMIM: 611506) centromere protein Q [Homo sa  (268 aa)
 initn: 1663 init1: 1663 opt: 1663  Z-score: 1261.6  bits: 241.2 E(85289): 1.6e-63
Smith-Waterman score: 1663; 100.0% identity (100.0% similar) in 268 aa overlap (1-268:1-268)

               10        20        30        40        50        60
pF1KE9 MSGKANASKKNAQQLKRNPKRKKDNEEVVLSENKVRNTVKKNKNHLKDLSSEGQTKHTNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MSGKANASKKNAQQLKRNPKRKKDNEEVVLSENKVRNTVKKNKNHLKDLSSEGQTKHTNL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 KHGKTAASKRKTWQPLSKSTRDHLQTMMESVIMTILSNSIKEKEEIQYHLNFLKKRLLQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 KHGKTAASKRKTWQPLSKSTRDHLQTMMESVIMTILSNSIKEKEEIQYHLNFLKKRLLQQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE9 CETLKVPPKKMEDLTNVSSLLNMERARDKANEEGLALLQEEIDKMVETTELMTGNIQSLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 CETLKVPPKKMEDLTNVSSLLNMERARDKANEEGLALLQEEIDKMVETTELMTGNIQSLK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE9 NKIQILASEVEEEEERVKQMHQINSSGVLSLPELSQKTLKAPTLQKEILALIPNQNALLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 NKIQILASEVEEEEERVKQMHQINSSGVLSLPELSQKTLKAPTLQKEILALIPNQNALLK
              190       200       210       220       230       240

              250       260        
pF1KE9 DLDILHNSSQMKSMSTFIEEAYKKLDAS
       ::::::::::::::::::::::::::::
NP_060 DLDILHNSSQMKSMSTFIEEAYKKLDAS
              250       260        

>>XP_005249262 (OMIM: 611506) PREDICTED: centromere prot  (268 aa)
 initn: 1663 init1: 1663 opt: 1663  Z-score: 1261.6  bits: 241.2 E(85289): 1.6e-63
Smith-Waterman score: 1663; 100.0% identity (100.0% similar) in 268 aa overlap (1-268:1-268)

               10        20        30        40        50        60
pF1KE9 MSGKANASKKNAQQLKRNPKRKKDNEEVVLSENKVRNTVKKNKNHLKDLSSEGQTKHTNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MSGKANASKKNAQQLKRNPKRKKDNEEVVLSENKVRNTVKKNKNHLKDLSSEGQTKHTNL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 KHGKTAASKRKTWQPLSKSTRDHLQTMMESVIMTILSNSIKEKEEIQYHLNFLKKRLLQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KHGKTAASKRKTWQPLSKSTRDHLQTMMESVIMTILSNSIKEKEEIQYHLNFLKKRLLQQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE9 CETLKVPPKKMEDLTNVSSLLNMERARDKANEEGLALLQEEIDKMVETTELMTGNIQSLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 CETLKVPPKKMEDLTNVSSLLNMERARDKANEEGLALLQEEIDKMVETTELMTGNIQSLK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE9 NKIQILASEVEEEEERVKQMHQINSSGVLSLPELSQKTLKAPTLQKEILALIPNQNALLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NKIQILASEVEEEEERVKQMHQINSSGVLSLPELSQKTLKAPTLQKEILALIPNQNALLK
              190       200       210       220       230       240

              250       260        
pF1KE9 DLDILHNSSQMKSMSTFIEEAYKKLDAS
       ::::::::::::::::::::::::::::
XP_005 DLDILHNSSQMKSMSTFIEEAYKKLDAS
              250       260        

>>XP_011513025 (OMIM: 611506) PREDICTED: centromere prot  (271 aa)
 initn: 1457 init1: 1457 opt: 1457  Z-score: 1108.2  bits: 212.8 E(85289): 5.5e-55
Smith-Waterman score: 1457; 98.3% identity (98.8% similar) in 240 aa overlap (29-268:32-271)

                 10        20        30        40        50        
pF1KE9   MSGKANASKKNAQQLKRNPKRKKDNEEVVLSENKVRNTVKKNKNHLKDLSSEGQTKHT
                                     :  :. ::::::::::::::::::::::::
XP_011 PVSAFFPPTSGSPLFTNVWARITLSAALRRVQEESVVRNTVKKNKNHLKDLSSEGQTKHT
              10        20        30        40        50        60 

       60        70        80        90       100       110        
pF1KE9 NLKHGKTAASKRKTWQPLSKSTRDHLQTMMESVIMTILSNSIKEKEEIQYHLNFLKKRLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NLKHGKTAASKRKTWQPLSKSTRDHLQTMMESVIMTILSNSIKEKEEIQYHLNFLKKRLL
              70        80        90       100       110       120 

      120       130       140       150       160       170        
pF1KE9 QQCETLKVPPKKMEDLTNVSSLLNMERARDKANEEGLALLQEEIDKMVETTELMTGNIQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QQCETLKVPPKKMEDLTNVSSLLNMERARDKANEEGLALLQEEIDKMVETTELMTGNIQS
             130       140       150       160       170       180 

      180       190       200       210       220       230        
pF1KE9 LKNKIQILASEVEEEEERVKQMHQINSSGVLSLPELSQKTLKAPTLQKEILALIPNQNAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LKNKIQILASEVEEEEERVKQMHQINSSGVLSLPELSQKTLKAPTLQKEILALIPNQNAL
             190       200       210       220       230       240 

      240       250       260        
pF1KE9 LKDLDILHNSSQMKSMSTFIEEAYKKLDAS
       ::::::::::::::::::::::::::::::
XP_011 LKDLDILHNSSQMKSMSTFIEEAYKKLDAS
             250       260       270 




268 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 06:27:06 2016 done: Sun Nov  6 06:27:07 2016
 Total Scan time:  6.810 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]