FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE9607, 268 aa
  1>>>pF1KE9607 268 - 268 aa - 268 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.7534+/-0.00111; mu= 4.7265+/- 0.067
 mean_var=151.2380+/-29.652, 0's: 0 Z-trim(107.2): 28  B-trim: 0 in 0/51
 Lambda= 0.104290
 statistics sampled from 9442 (9448) to 9442 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.645), E-opt: 0.2 (0.29), width:  16
 Scan time:  2.070

The best scores are:                                      opt bits E(32554)
CCDS4925.1 CENPQ gene_id:55166|Hs108|chr6          ( 268) 1663 261.7 3.8e-70


>>CCDS4925.1 CENPQ gene_id:55166|Hs108|chr6               (268 aa)
 initn: 1663 init1: 1663 opt: 1663  Z-score: 1372.8  bits: 261.7 E(32554): 3.8e-70
Smith-Waterman score: 1663; 100.0% identity (100.0% similar) in 268 aa overlap (1-268:1-268)

               10        20        30        40        50        60
pF1KE9 MSGKANASKKNAQQLKRNPKRKKDNEEVVLSENKVRNTVKKNKNHLKDLSSEGQTKHTNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS49 MSGKANASKKNAQQLKRNPKRKKDNEEVVLSENKVRNTVKKNKNHLKDLSSEGQTKHTNL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 KHGKTAASKRKTWQPLSKSTRDHLQTMMESVIMTILSNSIKEKEEIQYHLNFLKKRLLQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS49 KHGKTAASKRKTWQPLSKSTRDHLQTMMESVIMTILSNSIKEKEEIQYHLNFLKKRLLQQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE9 CETLKVPPKKMEDLTNVSSLLNMERARDKANEEGLALLQEEIDKMVETTELMTGNIQSLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS49 CETLKVPPKKMEDLTNVSSLLNMERARDKANEEGLALLQEEIDKMVETTELMTGNIQSLK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE9 NKIQILASEVEEEEERVKQMHQINSSGVLSLPELSQKTLKAPTLQKEILALIPNQNALLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS49 NKIQILASEVEEEEERVKQMHQINSSGVLSLPELSQKTLKAPTLQKEILALIPNQNALLK
              190       200       210       220       230       240

              250       260        
pF1KE9 DLDILHNSSQMKSMSTFIEEAYKKLDAS
       ::::::::::::::::::::::::::::
CCDS49 DLDILHNSSQMKSMSTFIEEAYKKLDAS
              250       260        




268 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 06:27:05 2016 done: Sun Nov  6 06:27:06 2016
 Total Scan time:  2.070 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]