Result of FASTA (ccds) for
pFN21AE9604
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE9604, 219 aa
1>>>pF1KE9604 219 - 219 aa - 219 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.2227+/-0.00102; mu= -1.3833+/- 0.062
mean_var=247.2016+/-49.481, 0's: 0 Z-trim(112.7): 32 B-trim: 200 in 1/54
Lambda= 0.081573
statistics sampled from 13413 (13438) to 13413 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.708), E-opt: 0.2 (0.413), width: 16
Scan time: 2.230
The best scores are: opt bits E(32554)
CCDS4586.1 HIST1H1E gene_id:3008|Hs108|chr6 ( 219) 1337 169.3 1.7e-42
CCDS4597.1 HIST1H1D gene_id:3007|Hs108|chr6 ( 221) 1142 146.4 1.4e-35
CCDS4577.1 HIST1H1C gene_id:3006|Hs108|chr6 ( 213) 1106 142.1 2.5e-34
CCDS4635.1 HIST1H1B gene_id:3009|Hs108|chr6 ( 226) 1098 141.2 5e-34
CCDS4569.1 HIST1H1A gene_id:3024|Hs108|chr6 ( 215) 877 115.2 3.3e-26
CCDS34349.1 HIST1H1T gene_id:3010|Hs108|chr6 ( 207) 563 78.2 4.2e-15
>>CCDS4586.1 HIST1H1E gene_id:3008|Hs108|chr6 (219 aa)
initn: 1337 init1: 1337 opt: 1337 Z-score: 876.5 bits: 169.3 E(32554): 1.7e-42
Smith-Waterman score: 1337; 100.0% identity (100.0% similar) in 219 aa overlap (1-219:1-219)
10 20 30 40 50 60
pF1KE9 MSETAPAAPAAPAPAEKTPVKKKARKSAGAAKRKASGPPVSELITKAVAASKERSGVSLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MSETAPAAPAAPAPAEKTPVKKKARKSAGAAKRKASGPPVSELITKAVAASKERSGVSLA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE9 ALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 ALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE9 KKAGAAKAKKPAGAAKKPKKATGAATPKKSAKKTPKKAKKPAAAAGAKKAKSPKKAKAAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 KKAGAAKAKKPAGAAKKPKKATGAATPKKSAKKTPKKAKKPAAAAGAKKAKSPKKAKAAK
130 140 150 160 170 180
190 200 210
pF1KE9 PKKAPKSPAKAKAVKPKAAKPKTAKPKAAKPKKAAAKKK
:::::::::::::::::::::::::::::::::::::::
CCDS45 PKKAPKSPAKAKAVKPKAAKPKTAKPKAAKPKKAAAKKK
190 200 210
>>CCDS4597.1 HIST1H1D gene_id:3007|Hs108|chr6 (221 aa)
initn: 814 init1: 814 opt: 1142 Z-score: 752.5 bits: 146.4 E(32554): 1.4e-35
Smith-Waterman score: 1142; 86.0% identity (94.1% similar) in 221 aa overlap (1-219:1-221)
10 20 30 40 50
pF1KE9 MSETAPAAPAAPAPAEKTPVKKKARKS-AGAAKRKASGPPVSELITKAVAASKERSGVSL
:::::: ::. :::::::::::::.:. : :.::::::::::::::::::::::::::::
CCDS45 MSETAPLAPTIPAPAEKTPVKKKAKKAGATAGKRKASGPPVSELITKAVAASKERSGVSL
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE9 AALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::
CCDS45 AALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEGKPK
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE9 AKKAGAAKAKKPAGAAKKPKKATGAATPKKSAKKTPKKAKKPAAAAGAKK-AKSPKKAKA
:::::::: .:::::::::::..:::::::: ::::::.::::.:::.:: ::: ::.:.
CCDS45 AKKAGAAKPRKPAGAAKKPKKVAGAATPKKSIKKTPKKVKKPATAAGTKKVAKSAKKVKT
130 140 150 160 170 180
180 190 200 210
pF1KE9 AKPKKAPKSPAKAKAVKPKAAKPKTAKPKAAKPKKAAAKKK
.:::: :::::::: ::::::::..:::..: :::: :::
CCDS45 PQPKKAAKSPAKAKAPKPKAAKPKSGKPKVTKAKKAAPKKK
190 200 210 220
>>CCDS4577.1 HIST1H1C gene_id:3006|Hs108|chr6 (213 aa)
initn: 931 init1: 931 opt: 1106 Z-score: 729.8 bits: 142.1 E(32554): 2.5e-34
Smith-Waterman score: 1106; 86.9% identity (93.9% similar) in 214 aa overlap (1-213:1-212)
10 20 30 40 50 60
pF1KE9 MSETAPAAPAAPAPAEKTPVKKKARKSAGAAKRKASGPPVSELITKAVAASKERSGVSLA
::::::::::: ::::.:::::: :.::.. ::::::::::::::::::::::::::::
CCDS45 MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE9 ALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKA
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.
CCDS45 ALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKV
70 80 90 100 110 120
130 140 150 160 170
pF1KE9 KKAGAAKAKKPAGAAKKPKKATGAATPKKSAKKTPKKAKKPAAAAGAKK-AKSPKKAKAA
::::..: :::.:::::::::.:.::::::::::::::::::::. .:: ::::::::.:
CCDS45 KKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVA
130 140 150 160 170 180
180 190 200 210
pF1KE9 KPKKAPKSPAKAKAVKPKAAKPKTAKPKAAKPKKAAAKKK
::::: :: :: ::::::::::..::: : :::
CCDS45 KPKKAAKSAAK--AVKPKAAKPKVVKPKKAAPKKK
190 200 210
>>CCDS4635.1 HIST1H1B gene_id:3009|Hs108|chr6 (226 aa)
initn: 1125 init1: 652 opt: 1098 Z-score: 724.3 bits: 141.2 E(32554): 5e-34
Smith-Waterman score: 1098; 84.7% identity (91.0% similar) in 222 aa overlap (1-218:1-220)
10 20 30 40 50
pF1KE9 MSETAPAAPAAPAPAEKTPVKKKARKSA---GAAKRKASGPPVSELITKAVAASKERSGV
::::::: :.:::.::.:.:::: :.: :::::::.::::::::::::::::::.:.
CCDS46 MSETAPAETATPAPVEKSPAKKKATKKAAGAGAAKRKATGPPVSELITKAVAASKERNGL
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE9 SLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAK
:::::::::::.::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 SLAALKKALAAGGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAK
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE9 PKAKKAGAAKAKKPAGAAKKPKKATGAATPKKSAKKTPKKAKKPAAAAGAKKAKSPKKAK
:::::::::::::::::. :::: :: ::..:::::::::::::. : ::::::::
CCDS46 PKAKKAGAAKAKKPAGAT--PKKAKKAAGAKKAVKKTPKKAKKPAAAGVKKVAKSPKKAK
130 140 150 160 170
180 190 200 210
pF1KE9 AA-KPKKAPKSPAKAKAVKPKAAKPKTAKPKAAKPKKAAAKKK
:: ::::: ::::: :::::::::::.::::::::: : :::
CCDS46 AAAKPKKATKSPAKPKAVKPKAAKPKAAKPKAAKPKAAKAKKAAAKKK
180 190 200 210 220
>>CCDS4569.1 HIST1H1A gene_id:3024|Hs108|chr6 (215 aa)
initn: 732 init1: 540 opt: 877 Z-score: 584.1 bits: 115.2 E(32554): 3.3e-26
Smith-Waterman score: 877; 71.2% identity (85.1% similar) in 222 aa overlap (1-219:1-215)
10 20 30 40 50
pF1KE9 MSETAPAAPAAPAPAEKTPVKKKARKSAGAA---KRKASGPPVSELITKAVAASKERSGV
::::.: :::: : :: . :::.: : :: :.: .:: :::::..:...::::.::
CCDS45 MSETVPPAPAASAAPEKPLAGKKAKKPAKAAAASKKKPAGPSVSELIVQAASSSKERGGV
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE9 SLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAK
::::::::::::::::::::::::::.:::::::::::::::::::::::::::.: :.:
CCDS45 SLAALKKALAAAGYDVEKNNSRIKLGIKSLVSKGTLVQTKGTGASGSFKLNKKASSVETK
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE9 PKAKKAGAAKAKKPAGAAKKPKKATGAATPKKSAKKTPKKAKKPAAAAGAKKAKSPKKAK
: :.:. : : .::.:: ::::::. :::.: ::::::::::. :..:.::: :
CCDS45 PGASKV--ATKTKATGASKKLKKATGAS--KKSVK-TPKKAKKPAATR--KSSKNPKKPK
130 140 150 160 170
180 190 200 210
pF1KE9 AAKPKKAPKSPAKAKAVKPKAAKPKTAKPKAAKPKKAAAKKK
..::::. ::::::::::::::: ...:::.::::::: :::
CCDS45 TVKPKKVAKSPAKAKAVKPKAAKARVTKPKTAKPKKAAPKKK
180 190 200 210
>>CCDS34349.1 HIST1H1T gene_id:3010|Hs108|chr6 (207 aa)
initn: 623 init1: 396 opt: 563 Z-score: 384.6 bits: 78.2 E(32554): 4.2e-15
Smith-Waterman score: 594; 53.4% identity (74.9% similar) in 219 aa overlap (1-213:1-207)
10 20 30 40 50
pF1KE9 MSETAPAAPAAP--APAEKTPVKKKARKSAG--AAKRKASGPPVSELITKAVAASKERSG
::::.::: :. : :: :.::..:: :: .:.::. . ::.:::.:...:.:: :
CCDS34 MSETVPAASASAGVAAMEKLPTKKRGRKPAGLISASRKVPNLSVSKLITEALSVSQERVG
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE9 VSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEA
.::.::::::::::::::::::::::.:::::.:: ::::.::::::::::.::. .
CCDS34 MSLVALKKALAAAGYDVEKNNSRIKLSLKSLVNKGILVQTRGTGASGSFKLSKKVIPKST
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE9 KPKAKKAGAAKAKKPAGA--AKKPKKATGAATPKKSAKKTPKKAKKPAAAAGAKKAKSPK
. ::::. .::.:: . . .:.:: : :: :.:::: :.. : ..: .
CCDS34 RSKAKKSVSAKTKKLVLSRDSKSPKTA-----------KTNKRAKKPRATT-PKTVRSGR
130 140 150 160
180 190 200 210
pF1KE9 KAKAAKPKKAPKSPAKAKAVKPKAAKPKTAKPKAAKPKKAAAKKK
:::.:: :. :::.::.: : : .. . .. . : ::
CCDS34 KAKGAKGKQQQKSPVKARASKSKLTQHHEVNVRKATSKK
170 180 190 200
219 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 06:28:47 2016 done: Sun Nov 6 06:28:47 2016
Total Scan time: 2.230 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]