FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE9602, 197 aa
  1>>>pF1KE9602 197 - 197 aa - 197 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.1834+/-0.000982; mu= 0.6964+/- 0.059
 mean_var=157.3542+/-31.097, 0's: 0 Z-trim(110.1): 18  B-trim: 95 in 1/52
 Lambda= 0.102243
 statistics sampled from 11329 (11338) to 11329 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.711), E-opt: 0.2 (0.348), width:  16
 Scan time:  2.280

The best scores are:                                      opt bits E(32554)
CCDS45974.1 SPC24 gene_id:147841|Hs108|chr19       ( 197) 1260 197.0 6.4e-51


>>CCDS45974.1 SPC24 gene_id:147841|Hs108|chr19            (197 aa)
 initn: 1260 init1: 1260 opt: 1260  Z-score: 1027.7  bits: 197.0 E(32554): 6.4e-51
Smith-Waterman score: 1260; 100.0% identity (100.0% similar) in 197 aa overlap (1-197:1-197)

               10        20        30        40        50        60
pF1KE9 MAAFRDIEEVSQGLLSLLGANRAEAQQRRLLGRHEQVVERLLETQDGAEKQLREILTMEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MAAFRDIEEVSQGLLSLLGANRAEAQQRRLLGRHEQVVERLLETQDGAEKQLREILTMEK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 EVAQSLLNAKEQVHQGGVELQQLEAGLQEAGEEDTRLKASLLQLTRELEELKEIEADLER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 EVAQSLLNAKEQVHQGGVELQQLEAGLQEAGEEDTRLKASLLQLTRELEELKEIEADLER
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE9 QEKEVDEDTTVTIPSAVYVAQLYHQVSKIEWDYECEPGMVKGIHHGPSVAQPIHLDSTQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 QEKEVDEDTTVTIPSAVYVAQLYHQVSKIEWDYECEPGMVKGIHHGPSVAQPIHLDSTQL
              130       140       150       160       170       180

              190       
pF1KE9 SRKFISDYLWSLVDTEW
       :::::::::::::::::
CCDS45 SRKFISDYLWSLVDTEW
              190       




197 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 06:29:57 2016 done: Sun Nov  6 06:29:57 2016
 Total Scan time:  2.280 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]