Result of FASTA (omim) for
pFN21AE9601
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE9601, 187 aa
1>>>pF1KE9601 187 - 187 aa - 187 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.6778+/-0.000353; mu= 11.1637+/- 0.022
mean_var=73.4352+/-14.515, 0's: 0 Z-trim(114.5): 19 B-trim: 177 in 2/54
Lambda= 0.149666
statistics sampled from 24323 (24337) to 24323 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.674), E-opt: 0.2 (0.285), width: 16
Scan time: 4.360
The best scores are: opt bits E(85289)
NP_663748 (OMIM: 612972) tigger transposable eleme ( 591) 345 83.7 6.2e-16
NP_001248762 (OMIM: 603211) jerky protein homolog- ( 524) 211 54.7 2.9e-07
NP_003763 (OMIM: 603211) jerky protein homolog-lik ( 524) 211 54.7 2.9e-07
NP_663761 (OMIM: 612973) tigger transposable eleme ( 525) 209 54.3 3.9e-07
XP_011515657 (OMIM: 603210) PREDICTED: jerky prote ( 535) 163 44.3 0.00038
NP_001266281 (OMIM: 603210) jerky protein homolog ( 556) 163 44.3 0.0004
XP_011515656 (OMIM: 603210) PREDICTED: jerky prote ( 556) 163 44.3 0.0004
NP_001070995 (OMIM: 603210) jerky protein homolog ( 556) 163 44.3 0.0004
XP_006716740 (OMIM: 603210) PREDICTED: jerky prote ( 568) 163 44.3 0.0004
XP_006716741 (OMIM: 603210) PREDICTED: jerky prote ( 568) 163 44.3 0.0004
NP_003715 (OMIM: 603210) jerky protein homolog iso ( 568) 163 44.3 0.0004
NP_149985 (OMIM: 612969) tigger transposable eleme ( 549) 142 39.8 0.0091
>>NP_663748 (OMIM: 612972) tigger transposable element-d (591 aa)
initn: 233 init1: 125 opt: 345 Z-score: 407.1 bits: 83.7 E(85289): 6.2e-16
Smith-Waterman score: 345; 35.2% identity (67.6% similar) in 182 aa overlap (9-183:2-181)
10 20 30 40 50 60
pF1KE9 MPGERPTDATVIPSAKRERKAITLDLKLEVLRRFEAGEKLSQIAKALDLAISTVATIRDS
:. : .. : ..::. :::... : : . ..:.. : : .::. . ..
NP_663 MASKCSSERKSRTSLTLNQKLEMIKLSEEGMSKAEIGRRLGLLRQTVSQVVNA
10 20 30 40 50
70 80 90 100 110
pF1KE9 KEKIKASSQIATPLRASRLTRHRSAVMESMEQLLSLWLEDQSQPNATLSAAIVQEKAE--
:::. . :::. .:. :.:.... .::..: .:.:::.. : :: ...:.::
NP_663 KEKFLKEVKSATPMN-TRMIRKRNSLIADMEKVLVVWIEDQTSRNIPLSQSLIQNKALTL
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE9 FDDLQREHGEGSQTERFHASQGWLVRFKECHCLPHFKMNSAAPSNKDM-----YIEMLKS
:.... :.: . :.:.::.::..:::: . ..: .. : : :. : : : .
NP_663 FNSMKAERGVEAAEEKFEASRGWFMRFKERSHFHNIKAQGEAASA-DVEAAASYPEALAK
120 130 140 150 160 170
180
pF1KE9 IIEEGEYTPQVSLT
::.:: :: :
NP_663 IIDEGGYTKQQIFNVDETAFYWKKMPSRTFIAREEKSVPGFKASKDRLTLLLGANAAGDF
180 190 200 210 220 230
>>NP_001248762 (OMIM: 603211) jerky protein homolog-like (524 aa)
initn: 153 init1: 109 opt: 211 Z-score: 251.5 bits: 54.7 E(85289): 2.9e-07
Smith-Waterman score: 211; 27.3% identity (62.5% similar) in 176 aa overlap (14-183:2-171)
10 20 30 40 50 60
pF1KE9 MPGERPTDATVIPSAKRERKAITLDLKLEVLRRFEAGEKLSQIAKALDLAISTVATIRDS
:.::.: ..:. ::......: : . .:.: .. .:: :: .
NP_001 MSGKRKRVVLTIKDKLDIIKKLEDGGSSKQLAVIYGIGETTVRDIRKN
10 20 30 40
70 80 90 100 110
pF1KE9 KEKI--KASSQIATPLRASRLTRHRSAVMESMEQLLSLWLEDQSQPNATLSAAIVQEKAE
:::: :::. .: : :.: . . ...: ... . :...: . .:. : ..::
NP_001 KEKIITYASSSDSTSLLAKRKS-MKPSMYEELDRAMLEWFNQQRAKGNPISGPICAKRAE
50 60 70 80 90 100
120 130 140 150 160 170
pF1KE9 FDDLQREHGEGSQTERFHASQGWLVRFKECHCLPHFKMNSAAPSNKDMYIE----MLKSI
: .. : . . :. : :::.:::. : . .... . .. . .: ....
NP_001 F----FFYALGMDGD-FNPSAGWLTRFKQRHSIREINIRNERLNGDETAVEDFCNNFRDF
110 120 130 140 150 160
180
pF1KE9 IEEGEYTPQVSLT
::. . :.
NP_001 IERENLQPEQIYNADETGLFWKCLPSRISVIKGKCTVPGHKSIEERVTIMCCANATGLHK
170 180 190 200 210 220
>>NP_003763 (OMIM: 603211) jerky protein homolog-like [H (524 aa)
initn: 153 init1: 109 opt: 211 Z-score: 251.5 bits: 54.7 E(85289): 2.9e-07
Smith-Waterman score: 211; 27.3% identity (62.5% similar) in 176 aa overlap (14-183:2-171)
10 20 30 40 50 60
pF1KE9 MPGERPTDATVIPSAKRERKAITLDLKLEVLRRFEAGEKLSQIAKALDLAISTVATIRDS
:.::.: ..:. ::......: : . .:.: .. .:: :: .
NP_003 MSGKRKRVVLTIKDKLDIIKKLEDGGSSKQLAVIYGIGETTVRDIRKN
10 20 30 40
70 80 90 100 110
pF1KE9 KEKI--KASSQIATPLRASRLTRHRSAVMESMEQLLSLWLEDQSQPNATLSAAIVQEKAE
:::: :::. .: : :.: . . ...: ... . :...: . .:. : ..::
NP_003 KEKIITYASSSDSTSLLAKRKS-MKPSMYEELDRAMLEWFNQQRAKGNPISGPICAKRAE
50 60 70 80 90 100
120 130 140 150 160 170
pF1KE9 FDDLQREHGEGSQTERFHASQGWLVRFKECHCLPHFKMNSAAPSNKDMYIE----MLKSI
: .. : . . :. : :::.:::. : . .... . .. . .: ....
NP_003 F----FFYALGMDGD-FNPSAGWLTRFKQRHSIREINIRNERLNGDETAVEDFCNNFRDF
110 120 130 140 150 160
180
pF1KE9 IEEGEYTPQVSLT
::. . :.
NP_003 IERENLQPEQIYNADETGLFWKCLPSRISVIKGKCTVPGHKSIEERVTIMCCANATGLHK
170 180 190 200 210 220
>>NP_663761 (OMIM: 612973) tigger transposable element-d (525 aa)
initn: 158 init1: 96 opt: 209 Z-score: 249.1 bits: 54.3 E(85289): 3.9e-07
Smith-Waterman score: 209; 28.6% identity (66.4% similar) in 140 aa overlap (16-152:4-136)
10 20 30 40 50 60
pF1KE9 MPGERPTDATVIPSAKRERKAITLDLKLEVLRRFEAGEKLSQIAKALDLAISTVATIRDS
::.: ..:. ::......: : ...... . .. ::: :. .
NP_663 MLGKRKRVVLTIKDKLDIIKKLEEGISFKKLSVVYGIGESTVRDIKKN
10 20 30 40
70 80 90 100 110
pF1KE9 KEKIKASSQIATPLRA-SRLTRHRSAVMESMEQLLSLWLEDQSQPNATLSAAIVQEKAEF
::.: .. . : . :. .:...: ..... :...:. . .:..: ..:.:
NP_663 KERIINYANSSDPTSGVSKRKSMKSSTYEELDRVMIEWFNQQKTDGIPVSGTICAKQAKF
50 60 70 80 90 100
120 130 140 150 160 170
pF1KE9 --DDLQREHGEGSQTERFHASQGWLVRFKECHCLPHFKMNSAAPSNKDMYIEMLKSIIEE
: : : :. :.::.:::.:::. : .:
NP_663 FFDALGME-GD------FNASSGWLTRFKQRHGIPKAAGKGTKLKGDETAAREFCGSFQE
110 120 130 140 150 160
180
pF1KE9 GEYTPQVSLT
NP_663 FVEKENLQPEQIYGADQTGLFWKCLPSRTLTLETDQSTSGCRSSRERIIIMCCANATGLH
170 180 190 200 210 220
>>XP_011515657 (OMIM: 603210) PREDICTED: jerky protein h (535 aa)
initn: 127 init1: 92 opt: 163 Z-score: 195.3 bits: 44.3 E(85289): 0.00038
Smith-Waterman score: 163; 27.0% identity (56.6% similar) in 159 aa overlap (16-171:14-165)
10 20 30 40 50 60
pF1KE9 MPGERPTDATVIPSAKRERKAITLDLKLEVLRRFEAGEKLSQIAKALDLAISTVATIRDS
::.: ..:: :... :.: ::. . . . ....::. ::
XP_011 MASKPAAGKSRGEKRKRVVLTLKEKIDICTRLEKGESRKALMQEYNVGMSTLYDIRAH
10 20 30 40 50
70 80 90 100 110
pF1KE9 KEKIK---ASSQIATPLRASRLTRHRSAVMESMEQLLSLWLEDQSQPNATLSAAIVQEKA
: .. :::. :. : : : . .: ....: :. . . .. .:. .. :::
XP_011 KAQLLRFFASSDSNKALEQRR-TLH-TPKLEHLDRVLYEWFLGKRSEGVPVSGPMLIEKA
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE9 EFDDLQREHGEGSQTERFHASQGWLVRFKECHCLPHFKMNSAAPSNKDMYIEMLKSIIEE
. :. .. . :: : ::: ::: : . .. .: : . :..
XP_011 K--DFYEQM---QLTEPCVFSGGWLWRFKARHGIKKLDASSEKQSADHQAAEQFCAFFRS
120 130 140 150 160 170
180
pF1KE9 GEYTPQVSLT
XP_011 LAAEHGLSAEQVYNADETGLFWRCLPNPTPEGGAVPGPKQGKDRLTVLMCANATGSHRLK
180 190 200 210 220 230
>>NP_001266281 (OMIM: 603210) jerky protein homolog isof (556 aa)
initn: 127 init1: 92 opt: 163 Z-score: 195.1 bits: 44.3 E(85289): 0.0004
Smith-Waterman score: 163; 27.0% identity (56.6% similar) in 159 aa overlap (16-171:14-165)
10 20 30 40 50 60
pF1KE9 MPGERPTDATVIPSAKRERKAITLDLKLEVLRRFEAGEKLSQIAKALDLAISTVATIRDS
::.: ..:: :... :.: ::. . . . ....::. ::
NP_001 MASKPAAGKSRGEKRKRVVLTLKEKIDICTRLEKGESRKALMQEYNVGMSTLYDIRAH
10 20 30 40 50
70 80 90 100 110
pF1KE9 KEKIK---ASSQIATPLRASRLTRHRSAVMESMEQLLSLWLEDQSQPNATLSAAIVQEKA
: .. :::. :. : : : . .: ....: :. . . .. .:. .. :::
NP_001 KAQLLRFFASSDSNKALEQRR-TLH-TPKLEHLDRVLYEWFLGKRSEGVPVSGPMLIEKA
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE9 EFDDLQREHGEGSQTERFHASQGWLVRFKECHCLPHFKMNSAAPSNKDMYIEMLKSIIEE
. :. .. . :: : ::: ::: : . .. .: : . :..
NP_001 K--DFYEQM---QLTEPCVFSGGWLWRFKARHGIKKLDASSEKQSADHQAAEQFCAFFRS
120 130 140 150 160 170
180
pF1KE9 GEYTPQVSLT
NP_001 LAAEHGLSAEQVYNADETGLFWRCLPNPTPEGGAVPGPKQGKDRLTVLMCANATGSHRLK
180 190 200 210 220 230
>>XP_011515656 (OMIM: 603210) PREDICTED: jerky protein h (556 aa)
initn: 127 init1: 92 opt: 163 Z-score: 195.1 bits: 44.3 E(85289): 0.0004
Smith-Waterman score: 163; 27.0% identity (56.6% similar) in 159 aa overlap (16-171:14-165)
10 20 30 40 50 60
pF1KE9 MPGERPTDATVIPSAKRERKAITLDLKLEVLRRFEAGEKLSQIAKALDLAISTVATIRDS
::.: ..:: :... :.: ::. . . . ....::. ::
XP_011 MASKPAAGKSRGEKRKRVVLTLKEKIDICTRLEKGESRKALMQEYNVGMSTLYDIRAH
10 20 30 40 50
70 80 90 100 110
pF1KE9 KEKIK---ASSQIATPLRASRLTRHRSAVMESMEQLLSLWLEDQSQPNATLSAAIVQEKA
: .. :::. :. : : : . .: ....: :. . . .. .:. .. :::
XP_011 KAQLLRFFASSDSNKALEQRR-TLH-TPKLEHLDRVLYEWFLGKRSEGVPVSGPMLIEKA
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE9 EFDDLQREHGEGSQTERFHASQGWLVRFKECHCLPHFKMNSAAPSNKDMYIEMLKSIIEE
. :. .. . :: : ::: ::: : . .. .: : . :..
XP_011 K--DFYEQM---QLTEPCVFSGGWLWRFKARHGIKKLDASSEKQSADHQAAEQFCAFFRS
120 130 140 150 160 170
180
pF1KE9 GEYTPQVSLT
XP_011 LAAEHGLSAEQVYNADETGLFWRCLPNPTPEGGAVPGPKQGKDRLTVLMCANATGSHRLK
180 190 200 210 220 230
>>NP_001070995 (OMIM: 603210) jerky protein homolog isof (556 aa)
initn: 127 init1: 92 opt: 163 Z-score: 195.1 bits: 44.3 E(85289): 0.0004
Smith-Waterman score: 163; 27.0% identity (56.6% similar) in 159 aa overlap (16-171:14-165)
10 20 30 40 50 60
pF1KE9 MPGERPTDATVIPSAKRERKAITLDLKLEVLRRFEAGEKLSQIAKALDLAISTVATIRDS
::.: ..:: :... :.: ::. . . . ....::. ::
NP_001 MASKPAAGKSRGEKRKRVVLTLKEKIDICTRLEKGESRKALMQEYNVGMSTLYDIRAH
10 20 30 40 50
70 80 90 100 110
pF1KE9 KEKIK---ASSQIATPLRASRLTRHRSAVMESMEQLLSLWLEDQSQPNATLSAAIVQEKA
: .. :::. :. : : : . .: ....: :. . . .. .:. .. :::
NP_001 KAQLLRFFASSDSNKALEQRR-TLH-TPKLEHLDRVLYEWFLGKRSEGVPVSGPMLIEKA
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE9 EFDDLQREHGEGSQTERFHASQGWLVRFKECHCLPHFKMNSAAPSNKDMYIEMLKSIIEE
. :. .. . :: : ::: ::: : . .. .: : . :..
NP_001 K--DFYEQM---QLTEPCVFSGGWLWRFKARHGIKKLDASSEKQSADHQAAEQFCAFFRS
120 130 140 150 160 170
180
pF1KE9 GEYTPQVSLT
NP_001 LAAEHGLSAEQVYNADETGLFWRCLPNPTPEGGAVPGPKQGKDRLTVLMCANATGSHRLK
180 190 200 210 220 230
>>XP_006716740 (OMIM: 603210) PREDICTED: jerky protein h (568 aa)
initn: 127 init1: 92 opt: 163 Z-score: 194.9 bits: 44.3 E(85289): 0.0004
Smith-Waterman score: 163; 27.0% identity (56.6% similar) in 159 aa overlap (16-171:14-165)
10 20 30 40 50 60
pF1KE9 MPGERPTDATVIPSAKRERKAITLDLKLEVLRRFEAGEKLSQIAKALDLAISTVATIRDS
::.: ..:: :... :.: ::. . . . ....::. ::
XP_006 MASKPAAGKSRGEKRKRVVLTLKEKIDICTRLEKGESRKALMQEYNVGMSTLYDIRAH
10 20 30 40 50
70 80 90 100 110
pF1KE9 KEKIK---ASSQIATPLRASRLTRHRSAVMESMEQLLSLWLEDQSQPNATLSAAIVQEKA
: .. :::. :. : : : . .: ....: :. . . .. .:. .. :::
XP_006 KAQLLRFFASSDSNKALEQRR-TLH-TPKLEHLDRVLYEWFLGKRSEGVPVSGPMLIEKA
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE9 EFDDLQREHGEGSQTERFHASQGWLVRFKECHCLPHFKMNSAAPSNKDMYIEMLKSIIEE
. :. .. . :: : ::: ::: : . .. .: : . :..
XP_006 K--DFYEQM---QLTEPCVFSGGWLWRFKARHGIKKLDASSEKQSADHQAAEQFCAFFRS
120 130 140 150 160 170
180
pF1KE9 GEYTPQVSLT
XP_006 LAAEHGLSAEQVYNADETGLFWRCLPNPTPEGGAVPGPKQGKDRLTVLMCANATGSHRLK
180 190 200 210 220 230
>>XP_006716741 (OMIM: 603210) PREDICTED: jerky protein h (568 aa)
initn: 127 init1: 92 opt: 163 Z-score: 194.9 bits: 44.3 E(85289): 0.0004
Smith-Waterman score: 163; 27.0% identity (56.6% similar) in 159 aa overlap (16-171:14-165)
10 20 30 40 50 60
pF1KE9 MPGERPTDATVIPSAKRERKAITLDLKLEVLRRFEAGEKLSQIAKALDLAISTVATIRDS
::.: ..:: :... :.: ::. . . . ....::. ::
XP_006 MASKPAAGKSRGEKRKRVVLTLKEKIDICTRLEKGESRKALMQEYNVGMSTLYDIRAH
10 20 30 40 50
70 80 90 100 110
pF1KE9 KEKIK---ASSQIATPLRASRLTRHRSAVMESMEQLLSLWLEDQSQPNATLSAAIVQEKA
: .. :::. :. : : : . .: ....: :. . . .. .:. .. :::
XP_006 KAQLLRFFASSDSNKALEQRR-TLH-TPKLEHLDRVLYEWFLGKRSEGVPVSGPMLIEKA
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE9 EFDDLQREHGEGSQTERFHASQGWLVRFKECHCLPHFKMNSAAPSNKDMYIEMLKSIIEE
. :. .. . :: : ::: ::: : . .. .: : . :..
XP_006 K--DFYEQM---QLTEPCVFSGGWLWRFKARHGIKKLDASSEKQSADHQAAEQFCAFFRS
120 130 140 150 160 170
180
pF1KE9 GEYTPQVSLT
XP_006 LAAEHGLSAEQVYNADETGLFWRCLPNPTPEGGAVPGPKQGKDRLTVLMCANATGSHRLK
180 190 200 210 220 230
187 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 18:47:42 2016 done: Mon Nov 7 18:47:43 2016
Total Scan time: 4.360 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]