FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE9601, 187 aa
  1>>>pF1KE9601 187 - 187 aa - 187 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8558+/-0.000824; mu= 9.9523+/- 0.050
 mean_var=71.2822+/-13.979, 0's: 0 Z-trim(107.4): 23  B-trim: 10 in 1/50
 Lambda= 0.151909
 statistics sampled from 9521 (9533) to 9521 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.683), E-opt: 0.2 (0.293), width:  16
 Scan time:  1.350

The best scores are:                                      opt bits E(32554)
CCDS45556.1 CENPBD1 gene_id:92806|Hs108|chr16      ( 187) 1189 269.4 9.2e-73
CCDS2495.1 TIGD1 gene_id:200765|Hs108|chr2         ( 591)  345 84.6 1.2e-16


>>CCDS45556.1 CENPBD1 gene_id:92806|Hs108|chr16           (187 aa)
 initn: 1189 init1: 1189 opt: 1189  Z-score: 1419.8  bits: 269.4 E(32554): 9.2e-73
Smith-Waterman score: 1189; 99.5% identity (99.5% similar) in 187 aa overlap (1-187:1-187)

               10        20        30        40        50        60
pF1KE9 MPGERPTDATVIPSAKRERKAITLDLKLEVLRRFEAGEKLSQIAKALDLAISTVATIRDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MPGERPTDATVIPSAKRERKAITLDLKLEVLRRFEAGEKLSQIAKALDLAISTVATIRDS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 KEKIKASSQIATPLRASRLTRHRSAVMESMEQLLSLWLEDQSQPNATLSAAIVQEKAEFD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 KEKIKASSQIATPLRASRLTRHRSAVMESMEQLLSLWLEDQSQPNATLSAAIVQEKAEFD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE9 DLQREHGEGSQTERFHASQGWLVRFKECHCLPHFKMNSAAPSNKDMYIEMLKSIIEEGEY
       ::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::
CCDS45 DLQREHGEGSQTERFHASQGWLVRFKECHCLPHFKMNSAAPSNKDMYTEMLKSIIEEGEY
              130       140       150       160       170       180

              
pF1KE9 TPQVSLT
       :::::::
CCDS45 TPQVSLT
              

>>CCDS2495.1 TIGD1 gene_id:200765|Hs108|chr2              (591 aa)
 initn: 233 init1: 125 opt: 345  Z-score: 412.2  bits: 84.6 E(32554): 1.2e-16
Smith-Waterman score: 345; 35.2% identity (67.6% similar) in 182 aa overlap (9-183:2-181)

               10        20        30        40        50        60
pF1KE9 MPGERPTDATVIPSAKRERKAITLDLKLEVLRRFEAGEKLSQIAKALDLAISTVATIRDS
               :.   : .. : ..::. :::...  : : . ..:.. : :  .::. . ..
CCDS24        MASKCSSERKSRTSLTLNQKLEMIKLSEEGMSKAEIGRRLGLLRQTVSQVVNA
                      10        20        30        40        50   

               70        80        90       100       110          
pF1KE9 KEKIKASSQIATPLRASRLTRHRSAVMESMEQLLSLWLEDQSQPNATLSAAIVQEKAE--
       :::.    . :::.  .:. :.:.... .::..: .:.:::.. :  :: ...:.::   
CCDS24 KEKFLKEVKSATPMN-TRMIRKRNSLIADMEKVLVVWIEDQTSRNIPLSQSLIQNKALTL
            60         70        80        90       100       110  

      120       130       140       150       160            170   
pF1KE9 FDDLQREHGEGSQTERFHASQGWLVRFKECHCLPHFKMNSAAPSNKDM-----YIEMLKS
       :.... :.:  .  :.:.::.::..::::   . ..: .. : :  :.     : : : .
CCDS24 FNSMKAERGVEAAEEKFEASRGWFMRFKERSHFHNIKAQGEAASA-DVEAAASYPEALAK
            120       130       140       150        160       170 

           180                                                     
pF1KE9 IIEEGEYTPQVSLT                                              
       ::.:: :: :                                                  
CCDS24 IIDEGGYTKQQIFNVDETAFYWKKMPSRTFIAREEKSVPGFKASKDRLTLLLGANAAGDF
             180       190       200       210       220       230 




187 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 18:47:41 2016 done: Mon Nov  7 18:47:42 2016
 Total Scan time:  1.350 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]