FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE9568, 398 aa
  1>>>pF1KE9568 398 - 398 aa - 398 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0537+/-0.00133; mu= 12.5991+/- 0.079
 mean_var=169.9780+/-79.602, 0's: 0 Z-trim(101.5): 320  B-trim: 847 in 2/46
 Lambda= 0.098373
 statistics sampled from 5988 (6559) to 5988 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.537), E-opt: 0.2 (0.201), width:  16
 Scan time:  2.640

The best scores are:                                      opt bits E(32554)
CCDS6311.1 TRHR gene_id:7201|Hs108|chr8            ( 398) 2615 384.6 8.5e-107
CCDS2486.1 NMUR1 gene_id:10316|Hs108|chr2          ( 426)  448 77.1 3.4e-14
CCDS13502.1 NTSR1 gene_id:4923|Hs108|chr20         ( 418)  393 69.3 7.5e-12


>>CCDS6311.1 TRHR gene_id:7201|Hs108|chr8                 (398 aa)
 initn: 2615 init1: 2615 opt: 2615  Z-score: 2030.8  bits: 384.6 E(32554): 8.5e-107
Smith-Waterman score: 2615; 100.0% identity (100.0% similar) in 398 aa overlap (1-398:1-398)

               10        20        30        40        50        60
pF1KE9 MENETVSELNQTQLQPRAVVALEYQVVTILLVLIICGLGIVGNIMVVLVVMRTKHMRTPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 MENETVSELNQTQLQPRAVVALEYQVVTILLVLIICGLGIVGNIMVVLVVMRTKHMRTPT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 NCYLVSLAVADLMVLVAAGLPNITDSIYGSWVYGYVGCLCITYLQYLGINASSCSITAFT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 NCYLVSLAVADLMVLVAAGLPNITDSIYGSWVYGYVGCLCITYLQYLGINASSCSITAFT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE9 IERYIAICHPIKAQFLCTFSRAKKIIIFVWAFTSLYCMLWFFLLDLNISTYKDAIVISCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 IERYIAICHPIKAQFLCTFSRAKKIIIFVWAFTSLYCMLWFFLLDLNISTYKDAIVISCG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE9 YKISRNYYSPIYLMDFGVFYVVPMILATVLYGFIARILFLNPIPSDPKENSKTWKNDSTH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 YKISRNYYSPIYLMDFGVFYVVPMILATVLYGFIARILFLNPIPSDPKENSKTWKNDSTH
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE9 QNTNLNVNTSNRCFNSTVSSRKQVTKMLAVVVILFALLWMPYRTLVVVNSFLSSPFQENW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 QNTNLNVNTSNRCFNSTVSSRKQVTKMLAVVVILFALLWMPYRTLVVVNSFLSSPFQENW
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE9 FLLFCRICIYLNSAINPVIYNLMSQKFRAAFRKLCNCKQKPTEKPANYSVALNYSVIKES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 FLLFCRICIYLNSAINPVIYNLMSQKFRAAFRKLCNCKQKPTEKPANYSVALNYSVIKES
              310       320       330       340       350       360

              370       380       390        
pF1KE9 DHFSTELDDITVTDTYLSATKVSFDDTCLASEVSFSQS
       ::::::::::::::::::::::::::::::::::::::
CCDS63 DHFSTELDDITVTDTYLSATKVSFDDTCLASEVSFSQS
              370       380       390        

>>CCDS2486.1 NMUR1 gene_id:10316|Hs108|chr2               (426 aa)
 initn: 367 init1: 150 opt: 448  Z-score: 368.3  bits: 77.1 E(32554): 3.4e-14
Smith-Waterman score: 449; 29.5% identity (57.4% similar) in 376 aa overlap (3-351:41-390)

                                           10        20        30  
pF1KE9                             MENETVSELNQTQLQPRAVVALEYQVVTILLV
                                     : :   :    : :. .  .    .: ::.
CCDS24 LPGDLYPGGARNPMACNGSAARGHFDPEDLNLTDEALRLKYLGPQQTELFMPICATYLLI
               20        30        40        50        60        70

             40        50        60        70        80        90  
pF1KE9 LIICGLGIVGNIMVVLVVMRTKHMRTPTNCYLVSLAVADLMVLVAAGLPNITDSIYGSW-
       ...   : ::: .. ::..: : :::::: :: ::::.::.::.. :::     .:  : 
CCDS24 FVV---GAVGNGLTCLVILRHKAMRTPTNYYLFSLAVSDLLVLLV-GLPL---ELYEMWH
                  80        90       100       110           120   

                 100       110       120       130       140       
pF1KE9 ----VYGYVGCLCITYLQYLGINASSCSITAFTIERYIAICHPIKAQFLCTFSRAKKIII
           . :  ::   : :  .   ::  ..::...:::.:. ::..:. . : ....... 
CCDS24 NYPFLLGVGGCYFRTLLFEMVCLASVLNVTALSVERYVAVVHPLQARSMVTRAHVRRVLG
           130       140       150       160       170       180   

       150       160              170       180       190       200
pF1KE9 FVWAFTSLYCMLWFFLL----DLNI---STYKDAIVISCGYKISRNYYSPIYLMDFGVFY
        ::.. .. : :    :    .:..   .   :. :  :     :  :. .      .:.
CCDS24 AVWGL-AMLCSLPNTSLHGIRQLHVPCRGPVPDSAV--CMLVRPRALYNMVVQTTALLFF
            190       200       210         220       230       240

              210             220       230       240       250    
pF1KE9 VVPMILATVLYGFIA------RILFLNPIPSDPKENSKTWKNDSTHQNTNLNVNTSNRCF
        .:: . .::: .:.      :.:..        ...:   . ....  .  ..  .:  
CCDS24 CLPMAIMSVLYLLIGLRLRRERLLLM--------QEAKGRGSAAARSRYTCRLQQHDR--
              250       260               270       280       290  

          260       270       280       290       300              
pF1KE9 NSTVSSRKQVTKMLAVVVILFALLWMPYRTLVVVNSFLSSPFQENWFLLFCRICI-----
            .:.:::::: :.:..:.. : :...  :. : .:. . ..  : : .. .     
CCDS24 -----GRRQVTKMLFVLVVVFGICWAPFHADRVMWSVVSQ-WTDGLHLAFQHVHVISGIF
                   300       310       320        330       340    

      310       320       330          340       350       360     
pF1KE9 -YLNSAINPVIYNLMSQKFRAAFRK-LC--NCKQKPTEKPANYSVALNYSVIKESDHFST
        ::.:: :::.:.:::..:: .:.. ::   : ..   . ...:..              
CCDS24 FYLGSAANPVLYSLMSSRFRETFQEALCLGACCHRLRPRHSSHSLSRMTTGSTLCDVGSL
          350       360       370       380       390       400    

         370       380       390        
pF1KE9 ELDDITVTDTYLSATKVSFDDTCLASEVSFSQS
                                        
CCDS24 GSWVHPLAGNDGPEAQQETDPS           
          410       420                 

>>CCDS13502.1 NTSR1 gene_id:4923|Hs108|chr20              (418 aa)
 initn: 323 init1: 186 opt: 393  Z-score: 326.2  bits: 69.3 E(32554): 7.5e-12
Smith-Waterman score: 393; 24.6% identity (59.4% similar) in 362 aa overlap (3-346:43-394)

                                           10        20        30  
pF1KE9                             MENETVSELNQTQLQPRAVVALEYQVVTILLV
                                     .: :    ...:.  . .  .  :... :.
CCDS13 TPAADPFQRAQAGLEEALLAPGFGNASGNASERVLAAPSSELDVNTDIYSKVLVTAVYLA
             20        30        40        50        60        70  

             40        50           60        70        80         
pF1KE9 LIICGLGIVGNIMVVLVVMRTKHMRT---PTNCYLVSLAVADLMVLVAAGLPNITDSIY-
       :..  .: ::: ...... : : ...    .. .: :::..::..:. :   .. . :. 
CCDS13 LFV--VGTVGNTVTAFTLARKKSLQSLQSTVHYHLGSLALSDLLTLLLAMPVELYNFIWV
               80        90       100       110       120       130

        90       100       110       120       130       140       
pF1KE9 -GSWVYGYVGCLCITYLQYLGINASSCSITAFTIERYIAICHPIKAQFLCTFSRAKKIII
          :..: .::    .:.     :.. .......:::.:::::.::. : . ::.::.: 
CCDS13 HHPWAFGDAGCRGYYFLRDACTYATALNVASLSVERYLAICHPFKAKTLMSRSRTKKFIS
              140       150       160       170       180       190

       150       160        170        180       190       200     
pF1KE9 FVWAFTSLYCMLWFFLL-DLNISTY-KDAIVISCGYKISRNYYSPIYLMDFGVFYVVPMI
        .:  ..:  .  .: . . : :.  . :  . :   :     . .  ..  . .. ::.
CCDS13 AIWLASALLAVPMLFTMGEQNRSADGQHAGGLVCTPTIHTATVKVVIQVNTFMSFIFPMV
              200       210       220       230       240       250

         210       220       230       240       250       260     
pF1KE9 LATVLYGFIARILFLNPIPSDPKENSKTWKNDSTHQNTNLNVNTSNRCFNSTVSSRKQVT
       . .::  .::  : .  .  .  :....    . :.. .. .. .       :.. .. .
CCDS13 VISVLNTIIANKLTV--MVRQAAEQGQVCTVGGEHSTFSMAIEPGR------VQALRHGV
              260         270       280       290             300  

         270       280       290           300          310        
pF1KE9 KMLAVVVILFALLWMPYRTLVVVNSFLS----SPFQENWFLLFCRIC---IYLNSAINPV
       ..: .::: :.. :.::..  ..  ..:    .::  ...  :  .    .:..:.:::.
CCDS13 RVLRAVVIAFVVCWLPYHVRRLMFCYISDEQWTPFLYDFYHYFYMVTNALFYVSSTINPI
            310       320       330       340       350       360  

      320       330           340       350       360       370    
pF1KE9 IYNLMSQKFRAAFRK----LCNCKQKPTEKPANYSVALNYSVIKESDHFSTELDDITVTD
       .:::.: .::  :      ::   ..  ..::                            
CCDS13 LYNLVSANFRHIFLATLACLCPVWRRRRKRPAFSRKADSVSSNHTLSSNATRETLY    
            370       380       390       400       410            

          380       390        
pF1KE9 TYLSATKVSFDDTCLASEVSFSQS




398 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 16:04:21 2016 done: Sun Nov  6 16:04:22 2016
 Total Scan time:  2.640 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]