FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE9537, 324 aa
  1>>>pF1KE9537 324 - 324 aa - 324 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.7356+/-0.000694; mu= 5.5606+/- 0.042
 mean_var=133.1516+/-26.739, 0's: 0 Z-trim(114.6): 4  B-trim: 7 in 1/52
 Lambda= 0.111148
 statistics sampled from 15192 (15194) to 15192 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.788), E-opt: 0.2 (0.467), width:  16
 Scan time:  3.200

The best scores are:                                      opt bits E(32554)
CCDS4017.1 TMEM171 gene_id:134285|Hs108|chr5       ( 324) 2208 364.6  6e-101
CCDS54869.1 TMEM171 gene_id:134285|Hs108|chr5      ( 323) 2189 361.6 4.9e-100


>>CCDS4017.1 TMEM171 gene_id:134285|Hs108|chr5            (324 aa)
 initn: 2208 init1: 2208 opt: 2208  Z-score: 1925.9  bits: 364.6 E(32554): 6e-101
Smith-Waterman score: 2208; 99.7% identity (100.0% similar) in 324 aa overlap (1-324:1-324)

               10        20        30        40        50        60
pF1KE9 MSPAAAAEPDGDQQDRHVSKLILCFFVFGAVLLCVGVLLSIFGFQACQYKPLPDCPMVLK
       ::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::
CCDS40 MSPAAAAEPDGDQQDRHVSKLIFCFFVFGAVLLCVGVLLSIFGFQACQYKPLPDCPMVLK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 VAGPACAVVGLGAVILARSRAQLQLRAGLQRGQQMDPDRAFICGESRQFAQCLIFGFLFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 VAGPACAVVGLGAVILARSRAQLQLRAGLQRGQQMDPDRAFICGESRQFAQCLIFGFLFL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE9 TSGMLISVLGIWVPGCGSNWAQEPLNETDTGDSEPRMCGFLSLQIMGPLIVLVGLCFFVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 TSGMLISVLGIWVPGCGSNWAQEPLNETDTGDSEPRMCGFLSLQIMGPLIVLVGLCFFVV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE9 AHVKKRNTLNAGQDASEREEGQIQIMEPVQVTVGDSVIIFPPPPPPYFPESSASAVAESP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 AHVKKRNTLNAGQDASEREEGQIQIMEPVQVTVGDSVIIFPPPPPPYFPESSASAVAESP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE9 GTNSLLPNENPPSYYSIFNYGRTPTSEGAASERDCESIYTISGTNSSSEASHTPHLPSEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 GTNSLLPNENPPSYYSIFNYGRTPTSEGAASERDCESIYTISGTNSSSEASHTPHLPSEL
              250       260       270       280       290       300

              310       320    
pF1KE9 PPRYEEKENAAATFLPLSSEPSPP
       ::::::::::::::::::::::::
CCDS40 PPRYEEKENAAATFLPLSSEPSPP
              310       320    

>>CCDS54869.1 TMEM171 gene_id:134285|Hs108|chr5           (323 aa)
 initn: 1793 init1: 1793 opt: 2189  Z-score: 1909.4  bits: 361.6 E(32554): 4.9e-100
Smith-Waterman score: 2189; 99.4% identity (99.7% similar) in 324 aa overlap (1-324:1-323)

               10        20        30        40        50        60
pF1KE9 MSPAAAAEPDGDQQDRHVSKLILCFFVFGAVLLCVGVLLSIFGFQACQYKPLPDCPMVLK
       ::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::
CCDS54 MSPAAAAEPDGDQQDRHVSKLIFCFFVFGAVLLCVGVLLSIFGFQACQYKPLPDCPMVLK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 VAGPACAVVGLGAVILARSRAQLQLRAGLQRGQQMDPDRAFICGESRQFAQCLIFGFLFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 VAGPACAVVGLGAVILARSRAQLQLRAGLQRGQQMDPDRAFICGESRQFAQCLIFGFLFL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE9 TSGMLISVLGIWVPGCGSNWAQEPLNETDTGDSEPRMCGFLSLQIMGPLIVLVGLCFFVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 TSGMLISVLGIWVPGCGSNWAQEPLNETDTGDSEPRMCGFLSLQIMGPLIVLVGLCFFVV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE9 AHVKKRNTLNAGQDASEREEGQIQIMEPVQVTVGDSVIIFPPPPPPYFPESSASAVAESP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 AHVKKRNTLNAGQDASEREEGQIQIMEPVQVTVGDSVIIFPPPPPPYFPESSASAVAESP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE9 GTNSLLPNENPPSYYSIFNYGRTPTSEGAASERDCESIYTISGTNSSSEASHTPHLPSEL
       ::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::
CCDS54 GTNSLLPNENPPSYYSIFNYG-TPTSEGAASERDCESIYTISGTNSSSEASHTPHLPSEL
              250       260        270       280       290         

              310       320    
pF1KE9 PPRYEEKENAAATFLPLSSEPSPP
       ::::::::::::::::::::::::
CCDS54 PPRYEEKENAAATFLPLSSEPSPP
     300       310       320   




324 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 17:13:43 2016 done: Sun Nov  6 17:13:43 2016
 Total Scan time:  3.200 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]