Result of FASTA (ccds) for
pFN21AE9531
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE9531, 295 aa
1>>>pF1KE9531 295 - 295 aa - 295 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2316+/-0.000916; mu= 15.2046+/- 0.054
mean_var=80.6557+/-22.688, 0's: 0 Z-trim(104.7): 155 B-trim: 1008 in 2/45
Lambda= 0.142809
statistics sampled from 7843 (8050) to 7843 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.612), E-opt: 0.2 (0.247), width: 16
Scan time: 2.070
The best scores are: opt bits E(32554)
CCDS7374.1 RGR gene_id:5995|Hs108|chr10 ( 295) 1973 416.5 1.2e-116
CCDS41543.1 RGR gene_id:5995|Hs108|chr10 ( 253) 1397 297.8 5.6e-81
CCDS3687.1 RRH gene_id:10692|Hs108|chr4 ( 337) 358 83.8 1.9e-16
CCDS7376.1 OPN4 gene_id:94233|Hs108|chr10 ( 478) 325 77.1 2.8e-14
CCDS31072.1 OPN3 gene_id:23596|Hs108|chr1 ( 402) 301 72.1 7.5e-13
CCDS4923.1 OPN5 gene_id:221391|Hs108|chr6 ( 354) 295 70.8 1.6e-12
CCDS3063.1 RHO gene_id:6010|Hs108|chr3 ( 348) 269 65.5 6.5e-11
>>CCDS7374.1 RGR gene_id:5995|Hs108|chr10 (295 aa)
initn: 1973 init1: 1973 opt: 1973 Z-score: 2207.7 bits: 416.5 E(32554): 1.2e-116
Smith-Waterman score: 1973; 100.0% identity (100.0% similar) in 295 aa overlap (1-295:1-295)
10 20 30 40 50 60
pF1KE9 MAETSALPTGFGELEVLAVGMVLLVEALSGLSLNTLTIFSFCKTPELRTPCHLLVLSLAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MAETSALPTGFGELEVLAVGMVLLVEALSGLSLNTLTIFSFCKTPELRTPCHLLVLSLAL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE9 ADSGISLNALVAATSSLLRVSHRRWPYGSDGCQAHGFQGFVTALASICSSAAIAWGRYHH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 ADSGISLNALVAATSSLLRVSHRRWPYGSDGCQAHGFQGFVTALASICSSAAIAWGRYHH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE9 YCTRSQLAWNSAVSLVLFVWLSSAFWAALPLLGWGHYDYEPLGTCCTLDYSKGDRNFTSF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 YCTRSQLAWNSAVSLVLFVWLSSAFWAALPLLGWGHYDYEPLGTCCTLDYSKGDRNFTSF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE9 LFTMSFFNFAMPLFITITSYSLMEQKLGKSGHLQVNTTLPARTLLLGWGPYAILYLYAVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LFTMSFFNFAMPLFITITSYSLMEQKLGKSGHLQVNTTLPARTLLLGWGPYAILYLYAVI
190 200 210 220 230 240
250 260 270 280 290
pF1KE9 ADVTSISPKLQMVPALIAKMVPTINAINYALGNEMVCRGIWQCLSPQKREKDRTK
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 ADVTSISPKLQMVPALIAKMVPTINAINYALGNEMVCRGIWQCLSPQKREKDRTK
250 260 270 280 290
>>CCDS41543.1 RGR gene_id:5995|Hs108|chr10 (253 aa)
initn: 946 init1: 946 opt: 1397 Z-score: 1567.3 bits: 297.8 E(32554): 5.6e-81
Smith-Waterman score: 1600; 85.8% identity (85.8% similar) in 295 aa overlap (1-295:1-253)
10 20 30 40 50 60
pF1KE9 MAETSALPTGFGELEVLAVGMVLLVEALSGLSLNTLTIFSFCKTPELRTPCHLLVLSLAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MAETSALPTGFGELEVLAVGMVLLVEALSGLSLNTLTIFSFCKTPELRTPCHLLVLSLAL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE9 ADSGISLNALVAATSSLLRVSHRRWPYGSDGCQAHGFQGFVTALASICSSAAIAWGRYHH
:::::::::::::::::: ::::::::::::::::::::::::::::::::::::::
CCDS41 ADSGISLNALVAATSSLL----RRWPYGSDGCQAHGFQGFVTALASICSSAAIAWGRYHH
70 80 90 100 110
130 140 150 160 170 180
pF1KE9 YCTRSQLAWNSAVSLVLFVWLSSAFWAALPLLGWGHYDYEPLGTCCTLDYSKGDRNFTSF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 YCTRSQLAWNSAVSLVLFVWLSSAFWAALPLLGWGHYDYEPLGTCCTLDYSKGDRNFTSF
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE9 LFTMSFFNFAMPLFITITSYSLMEQKLGKSGHLQVNTTLPARTLLLGWGPYAILYLYAVI
:::::::::::::::::::::::::::::::::::
CCDS41 LFTMSFFNFAMPLFITITSYSLMEQKLGKSGHLQV-------------------------
180 190 200 210
250 260 270 280 290
pF1KE9 ADVTSISPKLQMVPALIAKMVPTINAINYALGNEMVCRGIWQCLSPQKREKDRTK
::::::::::::::::::::::::::::::::::::::::::
CCDS41 -------------PALIAKMVPTINAINYALGNEMVCRGIWQCLSPQKREKDRTK
220 230 240 250
>>CCDS3687.1 RRH gene_id:10692|Hs108|chr4 (337 aa)
initn: 307 init1: 183 opt: 358 Z-score: 408.7 bits: 83.8 E(32554): 1.9e-16
Smith-Waterman score: 427; 27.1% identity (59.9% similar) in 299 aa overlap (11-287:20-315)
10 20 30 40 50
pF1KE9 MAETSALPTGFGELEVLAVGMVLLVEALSGLSLNTLTIFSFCKTPELRTPC
:.. : :. :.. .. .. : ... : : :::::
CCDS36 MLRNNLGNSSDSKNEDGSVFSQTEHNIVATYLIMAGMISIISNIIVLGIFIKYKELRTPT
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE9 HLLVLSLALADSGISLNALVAATSSLLRVSHRRWPYGSDGCQAHGFQGFVTALASICSSA
. ....::..: :.: . ...: : : : .: :::... .. ..::: .
CCDS36 NAIIINLAVTDIGVSSIGYPMSAASDLYGS---WKFGYAGCQVYAGLNIFFGMASIGLLT
70 80 90 100 110
120 130 140 150 160
pF1KE9 AIAWGRYHHYCTRS---QLAWNSAVSLVLFVWLSSAFWAALPLLGWGHYDYEPLGTCCTL
..: :: : . ... :. ..:.: .:... ::: .:..::. : .: :. ::.
CCDS36 VVAVDRYLTICLPDVGRRMTTNTYIGLILGAWINGLFWALMPIIGWASYAPDPTGATCTI
120 130 140 150 160 170
170 180 190 200 210
pF1KE9 DYSKGDRNFTSFLFTMSFFNFAMPLFITITSY------------SLMEQKLGKSGHLQVN
.. :.::.:.:. .:. .:: .:: . . : : ..:... :..
CCDS36 NWRKNDRSFVSYTMTVIAINFIVPLTVMFYCYYHVTLSIKHHTTSDCTESLNRDWSDQID
180 190 200 210 220 230
220 230 240 250 260 270
pF1KE9 TTLPARTL----LLGWGPYAILYLYAVIADVTSISPKLQMVPALIAKMVPTINAINYALG
.: . . :..:.::.:. :.: ..: .: : . .. :.:: : :...
CCDS36 VTKMSVIMICMFLVAWSPYSIVCLWASFGDPKKIPPPMAIIAPLFAKSSTFYNPCIYVVA
240 250 260 270 280 290
280 290
pF1KE9 NEMVCRGI---WQCLSPQKREKDRTK
:. :.. ..: . :
CCDS36 NKKFRRAMLAMFKCQTHQTMPVTSILPMDVSQNPLASGRI
300 310 320 330
>>CCDS7376.1 OPN4 gene_id:94233|Hs108|chr10 (478 aa)
initn: 369 init1: 141 opt: 325 Z-score: 369.9 bits: 77.1 E(32554): 2.8e-14
Smith-Waterman score: 368; 29.1% identity (56.1% similar) in 285 aa overlap (19-271:73-352)
10 20 30 40
pF1KE9 MAETSALPTGFGELEVLAVGMVLLVEALSGLSLNTLTIFSFCKTPELR
.: :.:. .:.:. : .:..::.. ::
CCDS73 PSISPTAPGTWAAAWVPLPTVDVPDHAHYTLGTVILLVGLTGMLGNLTVIYTFCRSRSLR
50 60 70 80 90 100
50 60 70 80 90 100
pF1KE9 TPCHLLVLSLALADSGISLN-ALVAATSSLLRVSHRRWPYGSDGCQAHGFQGFVTALASI
:: ......::..: .:.. : : :::: ...: .: ::. ..: : . ...:.
CCDS73 TPANMFIINLAVSDFLMSFTQAPVFFTSSL----YKQWLFGETGCEFYAFCGALFGISSM
110 120 130 140 150
110 120 130 140 150 160
pF1KE9 CSSAAIAWGRYHHYCTRSQLAWNSA----VSLVLF-VWLSSAFWAALPLLGWGHYDYEPL
. .::: :: :: ... : ...::. ::: . :. :..::. : : :
CCDS73 ITLTAIALDRYL-VITRPLATFGVASKRRAAFVLLGVWLYALAWSLPPFFGWSAYVPEGL
160 170 180 190 200 210
170 180 190 200 210
pF1KE9 GTCCTLDYSKGDRNFTSFLFTMSFFNFAMPLFITITSYSLMEQKLGKSGH----------
: :. :: . .. . . : : .::.: : : .. . . ..:.
CCDS73 LTSCSWDYMSFTPAVRAYTMLLCCFVFFLPLLIIIYCYIFIFRAIRETGRALQTFGACKG
220 230 240 250 260 270
220 230 240 250
pF1KE9 ----------LQVNTTLPARTLL------LGWGPYAILYLYAVIADVTSISPKLQMVPAL
:: . . :: :.:.::. . : : . . ..: .. :::.
CCDS73 NGESLWQRQRLQSECKMAKIMLLVILLFVLSWAPYSAVALVAFAGYAHVLTPYMSSVPAV
280 290 300 310 320 330
260 270 280 290
pF1KE9 IAKMVPTINAINYALGNEMVCRGIWQCLSPQKREKDRTK
::: : : ::.
CCDS73 IAKASAIHNPIIYAITHPKYRVAIAQHLPCLGVLLGVSRRHSRPYPSYRSTHRSTLTSHT
340 350 360 370 380 390
>>CCDS31072.1 OPN3 gene_id:23596|Hs108|chr1 (402 aa)
initn: 320 init1: 215 opt: 301 Z-score: 344.2 bits: 72.1 E(32554): 7.5e-13
Smith-Waterman score: 333; 26.1% identity (54.8% similar) in 303 aa overlap (12-288:39-336)
10 20 30 40
pF1KE9 MAETSALPTGFGELEVLAVGMVLLVEALSGLSLNTLTIFSF
: : :: ..: .: :.. : :.. .
CCDS31 GHGYWDGGGAAGAEGPAPAGTLSPAPLFSPGTYERLA--LLLGSIGLLGVGNNLLVLVLY
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE9 CKTPELRTPCHLLVLSLALADSGISLNALVAATSSLLRVSHRRWPYGSDGCQAHGFQGFV
: .:::: :::.....:.: .:: ... . : :: . : . . :: ::.: .
CCDS31 YKFQRLRTPTHLLLVNISLSDLLVSLFGVTFTFVSCLRNG---WVWDTVGCVWDGFSGSL
70 80 90 100 110 120
110 120 130 140 150 160
pF1KE9 TALASICSSAAIAWGRYHHYCTRSQLAWNSAVSLVLFVWLSSAFWAALPLLGWGHYDYEP
...:: . ...:. :: . . .. : . ..:: : ::. :::::..: .
CCDS31 FGIVSIATLTVLAYERYIRVVHARVINFSWAWRAITYIWLYSLAWAGAPLLGWNRYILDV
130 140 150 160 170 180
170 180 190 200 210
pF1KE9 LGTCCTLDYSKGDRNFTSFLFTMSFFNFAMPLFITITSYS--LMEQKLGKSGH----LQV
: ::.:... : : .::.. . . ...:: . :. :. .. . . .::
CCDS31 HGLGCTVDWKSKDANDSSFVLFLFLGCLVVPLGVIAHCYGHILYSIRMLRCVEDLQTIQV
190 200 210 220 230 240
220 230 240 250 260
pF1KE9 NTTLPAR------------TLLLGWGPYAILYLYAVIADVTSISPKLQMVPALIAKMVPT
: . :.:. : :: .. . .: . ..: ...: :.:: .
CCDS31 IKILKYEKKLAKMCFLMIFTFLVCWMPYIVICFLVVNGHGHLVTPTISIVSYLFAKSNTV
250 260 270 280 290 300
270 280 290
pF1KE9 INAINYALGN--------EMVCRGIWQCLSPQKREKDRTK
: . :.. ...: . .: : :
CCDS31 YNPVIYVFMIRKFRRSLLQLLCLRLLRCQRPAKDLPAAGSEMQIRPIVMSQKDGDRPKKK
310 320 330 340 350 360
CCDS31 VTFNSSSIIFIITSDESLSVDDSDKTNGSKVDVIQVRPL
370 380 390 400
>>CCDS4923.1 OPN5 gene_id:221391|Hs108|chr6 (354 aa)
initn: 296 init1: 135 opt: 295 Z-score: 338.3 bits: 70.8 E(32554): 1.6e-12
Smith-Waterman score: 350; 26.6% identity (58.7% similar) in 286 aa overlap (17-277:34-315)
10 20 30 40
pF1KE9 MAETSALPTGFGELEVLAVGMVL-LVEALSGLSLNTLTIFSFCKTP
:..:. : .. :: .. . . .: .
CCDS49 NHTALPQDERLPHYLRDGDPFASKLSWEADLVAGFYLTIIGILSTFGNGYVLYMSSRRKK
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE9 ELRTPCHLLVLSLALADSGISLNALVAATSSLLRVSHRRWPYGSDGCQAHGFQGFVTALA
.:: : ......::. : :::. :. ... .:: .: ::. .:. :: . .
CCDS49 KLR-PAEIMTINLAVCDLGISV---VGKPFTIISCFCHRWVFGWIGCRWYGWAGFFFGCG
70 80 90 100 110
110 120 130 140 150 160
pF1KE9 SICSSAAIAWGRYHHYCTRSQLAW---NSAVSLVLFVWLSSAFWAALPLLGWGHYDYEPL
:. . .:.. :: . : : .: . : . .: ..::...::.: : : ::.
CCDS49 SLITMTAVSLDRYLKICYLSYGVWLKRKHAYICLAAIWAYASFWTTMPLVGLGDYVPEPF
120 130 140 150 160 170
170 180 190 200 210
pF1KE9 GTCCTLDY--SKGDRNFTSFLFTMSFFNFAMPLFITITSYSLMEQKLGKSGH--------
:: ::::. .... . :.... :: . .: . . :: . :. .:..
CCDS49 GTSCTLDWWLAQASVGGQVFILNILFFCLLLPTAVIVFSYVKIIAKVKSSSKEVAHFDSR
180 190 200 210 220 230
220 230 240 250 260
pF1KE9 ------LQVNTTLPARTL----LLGWGPYAILYLYAVIADVTSISPKLQMVPALIAKMVP
:... : : . :..: :::.. ...... :: .:..::.:.:: .
CCDS49 IHSSHVLEMKLTKVAMLICAGFLIAWIPYAVVSVWSAFGRPDSIPIQLSVVPTLLAKSAA
240 250 260 270 280 290
270 280 290
pF1KE9 TINAINY-ALGNEMVCRGIWQCLSPQKREKDRTK
: : : .. ...:
CCDS49 MYNPIIYQVIDYKFACCQTGGLKATKKKSLEGFRLHTVTTVRKSSAVLEIHEEWE
300 310 320 330 340 350
>>CCDS3063.1 RHO gene_id:6010|Hs108|chr3 (348 aa)
initn: 222 init1: 160 opt: 269 Z-score: 309.4 bits: 65.5 E(32554): 6.5e-11
Smith-Waterman score: 321; 27.4% identity (55.9% similar) in 281 aa overlap (13-274:36-311)
10 20 30 40
pF1KE9 MAETSALPTGFGELEVLAVGMVLLVEALSGLSLNTLTIFSFC
.. .::. : ::. . :. .: ::..
CCDS30 GPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLI--VLGFPINFLTLYVTV
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE9 KTPELRTPCHLLVLSLALADSGISLNALVAATSSLLRVSHRRWPYGSDGCQAHGFQGFVT
. .:::: . ..:.::.:: . :... ::.: : . .: ::. .:: . .
CCDS30 QHKKLRTPLNYILLNLAVADLFMVLGGF---TSTLYTSLHGYFVFGPTGCNLEGFFATLG
70 80 90 100 110 120
110 120 130 140 150
pF1KE9 ALASICSSAAIAWGRYHHYC---TRSQLAWNSAVSLVLFVWLSSAFWAALPLLGWGHYDY
. .. : ...: :: : . ... : :. : :.:. . :: :: ::..:
CCDS30 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIP
130 140 150 160 170 180
160 170 180 190 200 210
pF1KE9 EPLGTCCTLDYS--KGDRNFTSFLFTMSFFNFAMPLFITITSYSLM--EQKLGKSGHLQV
: : : .:: : . : ::.. : .:..:..: . :. . : . . . .
CCDS30 EGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQES
190 200 210 220 230 240
220 230 240 250 260
pF1KE9 NTTLPAR------------TLLLGWGPYAILYLYAVIADVTSISPKLQMVPALIAKMVPT
:: :. ..:. : ::: . .: . ....: .. .::..:: .
CCDS30 ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAI
250 260 270 280 290 300
270 280 290
pF1KE9 INAINYALGNEMVCRGIWQCLSPQKREKDRTK
: . : . :.
CCDS30 YNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA
310 320 330 340
295 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 01:51:47 2016 done: Mon Nov 7 01:51:47 2016
Total Scan time: 2.070 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]