FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE9464, 373 aa
  1>>>pF1KE9464 373 - 373 aa - 373 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7969+/-0.000764; mu= 19.5349+/- 0.046
 mean_var=61.1408+/-12.521, 0's: 0 Z-trim(107.4): 15  B-trim: 0 in 0/51
 Lambda= 0.164024
 statistics sampled from 9576 (9582) to 9576 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.66), E-opt: 0.2 (0.294), width:  16
 Scan time:  2.900

The best scores are:                                      opt bits E(32554)
CCDS3042.1 TPRA1 gene_id:131601|Hs108|chr3         ( 373) 2416 580.1 1.1e-165
CCDS46899.1 TPRA1 gene_id:131601|Hs108|chr3        ( 293) 1298 315.4   4e-86


>>CCDS3042.1 TPRA1 gene_id:131601|Hs108|chr3              (373 aa)
 initn: 2416 init1: 2416 opt: 2416  Z-score: 3088.0  bits: 580.1 E(32554): 1.1e-165
Smith-Waterman score: 2416; 100.0% identity (100.0% similar) in 373 aa overlap (1-373:1-373)

               10        20        30        40        50        60
pF1KE9 MDTLEEVTWANGSTALPPPLAPNISVPHRCLLLLYEDIGTSRVRYWDLLLLIPNVLFLIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MDTLEEVTWANGSTALPPPLAPNISVPHRCLLLLYEDIGTSRVRYWDLLLLIPNVLFLIF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 LLWKLPSARAKIRITSSPIFITFYILVFVVALVGIARAVVSMTVSTSNAATVADKILWEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 LLWKLPSARAKIRITSSPIFITFYILVFVVALVGIARAVVSMTVSTSNAATVADKILWEI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE9 TRFFLLAIELSVIILGLAFGHLESKSSIKRVLAITTVLSLAYSVTQGTLEILYPDAHLSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 TRFFLLAIELSVIILGLAFGHLESKSSIKRVLAITTVLSLAYSVTQGTLEILYPDAHLSA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE9 EDFNIYGHGGRQFWLVSSCFFFLVYSLVVILPKTPLKERISLPSRRSFYVYAGILALLNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 EDFNIYGHGGRQFWLVSSCFFFLVYSLVVILPKTPLKERISLPSRRSFYVYAGILALLNL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE9 LQGLGSVLLCFDIIEGLCCVDATTFLYFSFFAPLIYVAFLRGFFGSEPKILFSYKCQVDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 LQGLGSVLLCFDIIEGLCCVDATTFLYFSFFAPLIYVAFLRGFFGSEPKILFSYKCQVDE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE9 TEEPDVHLPQPYAVARREGLEAAGAAGASAASYSSTQFDSAGGVAYLDDIASMPCHTGSI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 TEEPDVHLPQPYAVARREGLEAAGAAGASAASYSSTQFDSAGGVAYLDDIASMPCHTGSI
              310       320       330       340       350       360

              370   
pF1KE9 NSTDSERWKAINA
       :::::::::::::
CCDS30 NSTDSERWKAINA
              370   

>>CCDS46899.1 TPRA1 gene_id:131601|Hs108|chr3             (293 aa)
 initn: 1320 init1: 1298 opt: 1298  Z-score: 1659.7  bits: 315.4 E(32554): 4e-86
Smith-Waterman score: 1298; 99.5% identity (100.0% similar) in 204 aa overlap (1-204:1-204)

               10        20        30        40        50        60
pF1KE9 MDTLEEVTWANGSTALPPPLAPNISVPHRCLLLLYEDIGTSRVRYWDLLLLIPNVLFLIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MDTLEEVTWANGSTALPPPLAPNISVPHRCLLLLYEDIGTSRVRYWDLLLLIPNVLFLIF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 LLWKLPSARAKIRITSSPIFITFYILVFVVALVGIARAVVSMTVSTSNAATVADKILWEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LLWKLPSARAKIRITSSPIFITFYILVFVVALVGIARAVVSMTVSTSNAATVADKILWEI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE9 TRFFLLAIELSVIILGLAFGHLESKSSIKRVLAITTVLSLAYSVTQGTLEILYPDAHLSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 TRFFLLAIELSVIILGLAFGHLESKSSIKRVLAITTVLSLAYSVTQGTLEILYPDAHLSA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE9 EDFNIYGHGGRQFWLVSSCFFFLVYSLVVILPKTPLKERISLPSRRSFYVYAGILALLNL
       :::::::::::::::::::::::.                                    
CCDS46 EDFNIYGHGGRQFWLVSSCFFFLLCRCHNLPVLQLLRSAHLRGFPPGLLRLGAQDPLLLQ
              190       200       210       220       230       240




373 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 17:41:51 2016 done: Sun Nov  6 17:41:52 2016
 Total Scan time:  2.900 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]