Result of FASTA (omim) for
pFN21AE9449
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE9449, 354 aa
1>>>pF1KE9449 354 - 354 aa - 354 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.1055+/-0.000481; mu= 23.1161+/- 0.030
mean_var=117.0306+/-32.889, 0's: 0 Z-trim(109.5): 539 B-trim: 1171 in 1/51
Lambda= 0.118556
statistics sampled from 16976 (17662) to 16976 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.557), E-opt: 0.2 (0.207), width: 16
Scan time: 6.930
The best scores are: opt bits E(85289)
NP_859528 (OMIM: 609042) opsin-5 [Homo sapiens] ( 354) 2420 425.9 6.7e-119
XP_016865905 (OMIM: 609042) PREDICTED: opsin-5 iso ( 408) 2399 422.4 8.6e-118
XP_016865900 (OMIM: 609042) PREDICTED: opsin-5 iso ( 298) 2042 361.1 1.8e-99
XP_016865902 (OMIM: 609042) PREDICTED: opsin-5 iso ( 285) 1522 272.1 1e-72
XP_016865901 (OMIM: 609042) PREDICTED: opsin-5 iso ( 285) 1522 272.1 1e-72
XP_016865898 (OMIM: 609042) PREDICTED: opsin-5 iso ( 303) 1412 253.4 4.9e-67
XP_016865904 (OMIM: 609042) PREDICTED: opsin-5 iso ( 243) 1228 221.7 1.3e-57
XP_016865899 (OMIM: 609042) PREDICTED: opsin-5 iso ( 299) 854 157.9 2.6e-38
XP_016865903 (OMIM: 609042) PREDICTED: opsin-5 iso ( 250) 844 156.1 7.9e-38
NP_006574 (OMIM: 605224) visual pigment-like recep ( 337) 595 113.7 6e-25
NP_150598 (OMIM: 606665) melanopsin isoform 1 [Hom ( 478) 547 105.7 2.1e-22
XP_016872445 (OMIM: 606665) PREDICTED: melanopsin ( 528) 547 105.8 2.2e-22
XP_016872446 (OMIM: 606665) PREDICTED: melanopsin ( 405) 515 100.1 8.7e-21
NP_001025186 (OMIM: 606665) melanopsin isoform 2 [ ( 489) 515 100.3 9.5e-21
XP_016872444 (OMIM: 606665) PREDICTED: melanopsin ( 539) 515 100.4 1e-20
NP_055137 (OMIM: 606695) opsin-3 [Homo sapiens] ( 402) 491 96.0 1.5e-19
NP_000530 (OMIM: 136880,180380,610445,613731) rhod ( 348) 449 88.7 2e-17
NP_000504 (OMIM: 300821,303700,303800) medium-wave ( 364) 446 88.3 2.9e-17
NP_064445 (OMIM: 300822,303700,303900) long-wave-s ( 364) 438 86.9 7.6e-17
NP_001699 (OMIM: 190900,613522) short-wave-sensiti ( 348) 402 80.7 5.3e-15
NP_001041 (OMIM: 182452) somatostatin receptor typ ( 369) 319 66.6 1e-10
NP_001040 (OMIM: 182451) somatostatin receptor typ ( 391) 314 65.7 1.9e-10
NP_005949 (OMIM: 600665) melatonin receptor type 1 ( 350) 313 65.5 2e-10
NP_001042 (OMIM: 182453) somatostatin receptor typ ( 418) 311 65.3 2.8e-10
NP_001265616 (OMIM: 182453) somatostatin receptor ( 418) 311 65.3 2.8e-10
XP_016884413 (OMIM: 182453) PREDICTED: somatostati ( 418) 311 65.3 2.8e-10
XP_006724374 (OMIM: 182453) PREDICTED: somatostati ( 418) 311 65.3 2.8e-10
XP_005261778 (OMIM: 182453) PREDICTED: somatostati ( 418) 311 65.3 2.8e-10
XP_016884412 (OMIM: 182453) PREDICTED: somatostati ( 418) 311 65.3 2.8e-10
XP_011528651 (OMIM: 182453) PREDICTED: somatostati ( 418) 311 65.3 2.8e-10
NP_001186948 (OMIM: 602548) nociceptin receptor is ( 370) 304 64.0 6.1e-10
NP_000904 (OMIM: 602548) nociceptin receptor isofo ( 370) 304 64.0 6.1e-10
NP_872588 (OMIM: 602548) nociceptin receptor isofo ( 370) 304 64.0 6.1e-10
XP_016883343 (OMIM: 602548) PREDICTED: nociceptin ( 370) 304 64.0 6.1e-10
XP_016883341 (OMIM: 602548) PREDICTED: nociceptin ( 388) 304 64.0 6.2e-10
XP_016883342 (OMIM: 602548) PREDICTED: nociceptin ( 388) 304 64.0 6.2e-10
XP_011527130 (OMIM: 602548) PREDICTED: nociceptin ( 388) 304 64.0 6.2e-10
NP_001305782 (OMIM: 602548) nociceptin receptor is ( 399) 304 64.0 6.3e-10
NP_001012740 (OMIM: 600342,613769) RPE-retinal G p ( 253) 297 62.5 1.2e-09
NP_001012738 (OMIM: 600342,613769) RPE-retinal G p ( 291) 296 62.4 1.4e-09
NP_002912 (OMIM: 600342,613769) RPE-retinal G prot ( 295) 295 62.3 1.6e-09
NP_001043 (OMIM: 182454) somatostatin receptor typ ( 388) 296 62.7 1.6e-09
NP_001471 (OMIM: 600377) galanin receptor type 1 [ ( 349) 291 61.7 2.8e-09
NP_001044 (OMIM: 182455) somatostatin receptor typ ( 364) 289 61.4 3.6e-09
NP_001166031 (OMIM: 182455) somatostatin receptor ( 364) 289 61.4 3.6e-09
XP_005263091 (OMIM: 162642) PREDICTED: neuropeptid ( 381) 281 60.1 9.4e-09
XP_005263090 (OMIM: 162642) PREDICTED: neuropeptid ( 381) 281 60.1 9.4e-09
NP_000901 (OMIM: 162642) neuropeptide Y receptor t ( 381) 281 60.1 9.4e-09
NP_005950 (OMIM: 125853,600804) melatonin receptor ( 362) 280 59.9 1e-08
XP_011541141 (OMIM: 125853,600804) PREDICTED: mela ( 362) 280 59.9 1e-08
>>NP_859528 (OMIM: 609042) opsin-5 [Homo sapiens] (354 aa)
initn: 2420 init1: 2420 opt: 2420 Z-score: 2255.6 bits: 425.9 E(85289): 6.7e-119
Smith-Waterman score: 2420; 100.0% identity (100.0% similar) in 354 aa overlap (1-354:1-354)
10 20 30 40 50 60
pF1KE9 MALNHTALPQDERLPHYLRDGDPFASKLSWEADLVAGFYLTIIGILSTFGNGYVLYMSSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_859 MALNHTALPQDERLPHYLRDGDPFASKLSWEADLVAGFYLTIIGILSTFGNGYVLYMSSR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE9 RKKKLRPAEIMTINLAVCDLGISVVGKPFTIISCFCHRWVFGWIGCRWYGWAGFFFGCGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_859 RKKKLRPAEIMTINLAVCDLGISVVGKPFTIISCFCHRWVFGWIGCRWYGWAGFFFGCGS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE9 LITMTAVSLDRYLKICYLSYGVWLKRKHAYICLAAIWAYASFWTTMPLVGLGDYVPEPFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_859 LITMTAVSLDRYLKICYLSYGVWLKRKHAYICLAAIWAYASFWTTMPLVGLGDYVPEPFG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE9 TSCTLDWWLAQASVGGQVFILNILFFCLLLPTAVIVFSYVKIIAKVKSSSKEVAHFDSRI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_859 TSCTLDWWLAQASVGGQVFILNILFFCLLLPTAVIVFSYVKIIAKVKSSSKEVAHFDSRI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE9 HSSHVLEMKLTKVAMLICAGFLIAWIPYAVVSVWSAFGRPDSIPIQLSVVPTLLAKSAAM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_859 HSSHVLEMKLTKVAMLICAGFLIAWIPYAVVSVWSAFGRPDSIPIQLSVVPTLLAKSAAM
250 260 270 280 290 300
310 320 330 340 350
pF1KE9 YNPIIYQVIDYKFACCQTGGLKATKKKSLEGFRLHTVTTVRKSSAVLEIHEEWE
::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_859 YNPIIYQVIDYKFACCQTGGLKATKKKSLEGFRLHTVTTVRKSSAVLEIHEEWE
310 320 330 340 350
>>XP_016865905 (OMIM: 609042) PREDICTED: opsin-5 isoform (408 aa)
initn: 2399 init1: 2399 opt: 2399 Z-score: 2235.7 bits: 422.4 E(85289): 8.6e-118
Smith-Waterman score: 2399; 100.0% identity (100.0% similar) in 352 aa overlap (1-352:1-352)
10 20 30 40 50 60
pF1KE9 MALNHTALPQDERLPHYLRDGDPFASKLSWEADLVAGFYLTIIGILSTFGNGYVLYMSSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MALNHTALPQDERLPHYLRDGDPFASKLSWEADLVAGFYLTIIGILSTFGNGYVLYMSSR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE9 RKKKLRPAEIMTINLAVCDLGISVVGKPFTIISCFCHRWVFGWIGCRWYGWAGFFFGCGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RKKKLRPAEIMTINLAVCDLGISVVGKPFTIISCFCHRWVFGWIGCRWYGWAGFFFGCGS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE9 LITMTAVSLDRYLKICYLSYGVWLKRKHAYICLAAIWAYASFWTTMPLVGLGDYVPEPFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LITMTAVSLDRYLKICYLSYGVWLKRKHAYICLAAIWAYASFWTTMPLVGLGDYVPEPFG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE9 TSCTLDWWLAQASVGGQVFILNILFFCLLLPTAVIVFSYVKIIAKVKSSSKEVAHFDSRI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TSCTLDWWLAQASVGGQVFILNILFFCLLLPTAVIVFSYVKIIAKVKSSSKEVAHFDSRI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE9 HSSHVLEMKLTKVAMLICAGFLIAWIPYAVVSVWSAFGRPDSIPIQLSVVPTLLAKSAAM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HSSHVLEMKLTKVAMLICAGFLIAWIPYAVVSVWSAFGRPDSIPIQLSVVPTLLAKSAAM
250 260 270 280 290 300
310 320 330 340 350
pF1KE9 YNPIIYQVIDYKFACCQTGGLKATKKKSLEGFRLHTVTTVRKSSAVLEIHEEWE
::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YNPIIYQVIDYKFACCQTGGLKATKKKSLEGFRLHTVTTVRKSSAVLEIHEEDKGRLWHQ
310 320 330 340 350 360
XP_016 LSCGENSEMTASSETLGTKAHSPLQETREGENEAVGGNNKCSGCEECI
370 380 390 400
>>XP_016865900 (OMIM: 609042) PREDICTED: opsin-5 isoform (298 aa)
initn: 2042 init1: 2042 opt: 2042 Z-score: 1906.9 bits: 361.1 E(85289): 1.8e-99
Smith-Waterman score: 2042; 100.0% identity (100.0% similar) in 298 aa overlap (57-354:1-298)
30 40 50 60 70 80
pF1KE9 KLSWEADLVAGFYLTIIGILSTFGNGYVLYMSSRRKKKLRPAEIMTINLAVCDLGISVVG
::::::::::::::::::::::::::::::
XP_016 MSSRRKKKLRPAEIMTINLAVCDLGISVVG
10 20 30
90 100 110 120 130 140
pF1KE9 KPFTIISCFCHRWVFGWIGCRWYGWAGFFFGCGSLITMTAVSLDRYLKICYLSYGVWLKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KPFTIISCFCHRWVFGWIGCRWYGWAGFFFGCGSLITMTAVSLDRYLKICYLSYGVWLKR
40 50 60 70 80 90
150 160 170 180 190 200
pF1KE9 KHAYICLAAIWAYASFWTTMPLVGLGDYVPEPFGTSCTLDWWLAQASVGGQVFILNILFF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KHAYICLAAIWAYASFWTTMPLVGLGDYVPEPFGTSCTLDWWLAQASVGGQVFILNILFF
100 110 120 130 140 150
210 220 230 240 250 260
pF1KE9 CLLLPTAVIVFSYVKIIAKVKSSSKEVAHFDSRIHSSHVLEMKLTKVAMLICAGFLIAWI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CLLLPTAVIVFSYVKIIAKVKSSSKEVAHFDSRIHSSHVLEMKLTKVAMLICAGFLIAWI
160 170 180 190 200 210
270 280 290 300 310 320
pF1KE9 PYAVVSVWSAFGRPDSIPIQLSVVPTLLAKSAAMYNPIIYQVIDYKFACCQTGGLKATKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PYAVVSVWSAFGRPDSIPIQLSVVPTLLAKSAAMYNPIIYQVIDYKFACCQTGGLKATKK
220 230 240 250 260 270
330 340 350
pF1KE9 KSLEGFRLHTVTTVRKSSAVLEIHEEWE
::::::::::::::::::::::::::::
XP_016 KSLEGFRLHTVTTVRKSSAVLEIHEEWE
280 290
>>XP_016865902 (OMIM: 609042) PREDICTED: opsin-5 isoform (285 aa)
initn: 1522 init1: 1522 opt: 1522 Z-score: 1426.4 bits: 272.1 E(85289): 1e-72
Smith-Waterman score: 1522; 100.0% identity (100.0% similar) in 229 aa overlap (124-352:1-229)
100 110 120 130 140 150
pF1KE9 CFCHRWVFGWIGCRWYGWAGFFFGCGSLITMTAVSLDRYLKICYLSYGVWLKRKHAYICL
::::::::::::::::::::::::::::::
XP_016 MTAVSLDRYLKICYLSYGVWLKRKHAYICL
10 20 30
160 170 180 190 200 210
pF1KE9 AAIWAYASFWTTMPLVGLGDYVPEPFGTSCTLDWWLAQASVGGQVFILNILFFCLLLPTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AAIWAYASFWTTMPLVGLGDYVPEPFGTSCTLDWWLAQASVGGQVFILNILFFCLLLPTA
40 50 60 70 80 90
220 230 240 250 260 270
pF1KE9 VIVFSYVKIIAKVKSSSKEVAHFDSRIHSSHVLEMKLTKVAMLICAGFLIAWIPYAVVSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VIVFSYVKIIAKVKSSSKEVAHFDSRIHSSHVLEMKLTKVAMLICAGFLIAWIPYAVVSV
100 110 120 130 140 150
280 290 300 310 320 330
pF1KE9 WSAFGRPDSIPIQLSVVPTLLAKSAAMYNPIIYQVIDYKFACCQTGGLKATKKKSLEGFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 WSAFGRPDSIPIQLSVVPTLLAKSAAMYNPIIYQVIDYKFACCQTGGLKATKKKSLEGFR
160 170 180 190 200 210
340 350
pF1KE9 LHTVTTVRKSSAVLEIHEEWE
:::::::::::::::::::
XP_016 LHTVTTVRKSSAVLEIHEEDKGRLWHQLSCGENSEMTASSETLGTKAHSPLQETREGENE
220 230 240 250 260 270
>>XP_016865901 (OMIM: 609042) PREDICTED: opsin-5 isoform (285 aa)
initn: 1522 init1: 1522 opt: 1522 Z-score: 1426.4 bits: 272.1 E(85289): 1e-72
Smith-Waterman score: 1522; 100.0% identity (100.0% similar) in 229 aa overlap (124-352:1-229)
100 110 120 130 140 150
pF1KE9 CFCHRWVFGWIGCRWYGWAGFFFGCGSLITMTAVSLDRYLKICYLSYGVWLKRKHAYICL
::::::::::::::::::::::::::::::
XP_016 MTAVSLDRYLKICYLSYGVWLKRKHAYICL
10 20 30
160 170 180 190 200 210
pF1KE9 AAIWAYASFWTTMPLVGLGDYVPEPFGTSCTLDWWLAQASVGGQVFILNILFFCLLLPTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AAIWAYASFWTTMPLVGLGDYVPEPFGTSCTLDWWLAQASVGGQVFILNILFFCLLLPTA
40 50 60 70 80 90
220 230 240 250 260 270
pF1KE9 VIVFSYVKIIAKVKSSSKEVAHFDSRIHSSHVLEMKLTKVAMLICAGFLIAWIPYAVVSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VIVFSYVKIIAKVKSSSKEVAHFDSRIHSSHVLEMKLTKVAMLICAGFLIAWIPYAVVSV
100 110 120 130 140 150
280 290 300 310 320 330
pF1KE9 WSAFGRPDSIPIQLSVVPTLLAKSAAMYNPIIYQVIDYKFACCQTGGLKATKKKSLEGFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 WSAFGRPDSIPIQLSVVPTLLAKSAAMYNPIIYQVIDYKFACCQTGGLKATKKKSLEGFR
160 170 180 190 200 210
340 350
pF1KE9 LHTVTTVRKSSAVLEIHEEWE
:::::::::::::::::::
XP_016 LHTVTTVRKSSAVLEIHEEDKGRLWHQLSCGENSEMTASSETLGTKAHSPLQETREGENE
220 230 240 250 260 270
>>XP_016865898 (OMIM: 609042) PREDICTED: opsin-5 isoform (303 aa)
initn: 1412 init1: 1412 opt: 1412 Z-score: 1324.4 bits: 253.4 E(85289): 4.9e-67
Smith-Waterman score: 1412; 100.0% identity (100.0% similar) in 212 aa overlap (141-352:36-247)
120 130 140 150 160 170
pF1KE9 WAGFFFGCGSLITMTAVSLDRYLKICYLSYGVWLKRKHAYICLAAIWAYASFWTTMPLVG
::::::::::::::::::::::::::::::
XP_016 LPIVFSWRKAQALELFSVYSTLPQASVICPGVWLKRKHAYICLAAIWAYASFWTTMPLVG
10 20 30 40 50 60
180 190 200 210 220 230
pF1KE9 LGDYVPEPFGTSCTLDWWLAQASVGGQVFILNILFFCLLLPTAVIVFSYVKIIAKVKSSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LGDYVPEPFGTSCTLDWWLAQASVGGQVFILNILFFCLLLPTAVIVFSYVKIIAKVKSSS
70 80 90 100 110 120
240 250 260 270 280 290
pF1KE9 KEVAHFDSRIHSSHVLEMKLTKVAMLICAGFLIAWIPYAVVSVWSAFGRPDSIPIQLSVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KEVAHFDSRIHSSHVLEMKLTKVAMLICAGFLIAWIPYAVVSVWSAFGRPDSIPIQLSVV
130 140 150 160 170 180
300 310 320 330 340 350
pF1KE9 PTLLAKSAAMYNPIIYQVIDYKFACCQTGGLKATKKKSLEGFRLHTVTTVRKSSAVLEIH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PTLLAKSAAMYNPIIYQVIDYKFACCQTGGLKATKKKSLEGFRLHTVTTVRKSSAVLEIH
190 200 210 220 230 240
pF1KE9 EEWE
::
XP_016 EEDKGRLWHQLSCGENSEMTASSETLGTKAHSPLQETREGENEAVGGNNKCSGCEECI
250 260 270 280 290 300
>>XP_016865904 (OMIM: 609042) PREDICTED: opsin-5 isoform (243 aa)
initn: 1228 init1: 1228 opt: 1228 Z-score: 1155.2 bits: 221.7 E(85289): 1.3e-57
Smith-Waterman score: 1228; 100.0% identity (100.0% similar) in 187 aa overlap (166-352:1-187)
140 150 160 170 180 190
pF1KE9 CYLSYGVWLKRKHAYICLAAIWAYASFWTTMPLVGLGDYVPEPFGTSCTLDWWLAQASVG
::::::::::::::::::::::::::::::
XP_016 MPLVGLGDYVPEPFGTSCTLDWWLAQASVG
10 20 30
200 210 220 230 240 250
pF1KE9 GQVFILNILFFCLLLPTAVIVFSYVKIIAKVKSSSKEVAHFDSRIHSSHVLEMKLTKVAM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GQVFILNILFFCLLLPTAVIVFSYVKIIAKVKSSSKEVAHFDSRIHSSHVLEMKLTKVAM
40 50 60 70 80 90
260 270 280 290 300 310
pF1KE9 LICAGFLIAWIPYAVVSVWSAFGRPDSIPIQLSVVPTLLAKSAAMYNPIIYQVIDYKFAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LICAGFLIAWIPYAVVSVWSAFGRPDSIPIQLSVVPTLLAKSAAMYNPIIYQVIDYKFAC
100 110 120 130 140 150
320 330 340 350
pF1KE9 CQTGGLKATKKKSLEGFRLHTVTTVRKSSAVLEIHEEWE
:::::::::::::::::::::::::::::::::::::
XP_016 CQTGGLKATKKKSLEGFRLHTVTTVRKSSAVLEIHEEDKGRLWHQLSCGENSEMTASSET
160 170 180 190 200 210
XP_016 LGTKAHSPLQETREGENEAVGGNNKCSGCEECI
220 230 240
>>XP_016865899 (OMIM: 609042) PREDICTED: opsin-5 isoform (299 aa)
initn: 860 init1: 840 opt: 854 Z-score: 808.7 bits: 157.9 E(85289): 2.6e-38
Smith-Waterman score: 1539; 82.1% identity (82.1% similar) in 296 aa overlap (57-352:1-243)
30 40 50 60 70 80
pF1KE9 KLSWEADLVAGFYLTIIGILSTFGNGYVLYMSSRRKKKLRPAEIMTINLAVCDLGISVVG
::::::::::::::::::::::::::::::
XP_016 MSSRRKKKLRPAEIMTINLAVCDLGISVVG
10 20 30
90 100 110 120 130 140
pF1KE9 KPFTIISCFCHRWVFGWIGCRWYGWAGFFFGCGSLITMTAVSLDRYLKICYLSYGVWLKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KPFTIISCFCHRWVFGWIGCRWYGWAGFFFGCGSLITMTAVSLDRYLKICYLSYGVWLKR
40 50 60 70 80 90
150 160 170 180 190 200
pF1KE9 KHAYICLAAIWAYASFWTTMPLVGLGDYVPEPFGTSCTLDWWLAQASVGGQVFILNILFF
::::::::::::::::::::::
XP_016 KHAYICLAAIWAYASFWTTMPL--------------------------------------
100 110
210 220 230 240 250 260
pF1KE9 CLLLPTAVIVFSYVKIIAKVKSSSKEVAHFDSRIHSSHVLEMKLTKVAMLICAGFLIAWI
:::::::::::::::::::::::::::::::::::::::::::::
XP_016 ---------------IIAKVKSSSKEVAHFDSRIHSSHVLEMKLTKVAMLICAGFLIAWI
120 130 140 150
270 280 290 300 310 320
pF1KE9 PYAVVSVWSAFGRPDSIPIQLSVVPTLLAKSAAMYNPIIYQVIDYKFACCQTGGLKATKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PYAVVSVWSAFGRPDSIPIQLSVVPTLLAKSAAMYNPIIYQVIDYKFACCQTGGLKATKK
160 170 180 190 200 210
330 340 350
pF1KE9 KSLEGFRLHTVTTVRKSSAVLEIHEEWE
::::::::::::::::::::::::::
XP_016 KSLEGFRLHTVTTVRKSSAVLEIHEEDKGRLWHQLSCGENSEMTASSETLGTKAHSPLQE
220 230 240 250 260 270
>>XP_016865903 (OMIM: 609042) PREDICTED: opsin-5 isoform (250 aa)
initn: 840 init1: 840 opt: 844 Z-score: 800.1 bits: 156.1 E(85289): 7.9e-38
Smith-Waterman score: 930; 75.0% identity (75.0% similar) in 212 aa overlap (141-352:36-194)
120 130 140 150 160 170
pF1KE9 WAGFFFGCGSLITMTAVSLDRYLKICYLSYGVWLKRKHAYICLAAIWAYASFWTTMPLVG
::::::::::::::::::::::::::::
XP_016 LPIVFSWRKAQALELFSVYSTLPQASVICPGVWLKRKHAYICLAAIWAYASFWTTMPL--
10 20 30 40 50 60
180 190 200 210 220 230
pF1KE9 LGDYVPEPFGTSCTLDWWLAQASVGGQVFILNILFFCLLLPTAVIVFSYVKIIAKVKSSS
:::::::::
XP_016 ---------------------------------------------------IIAKVKSSS
70
240 250 260 270 280 290
pF1KE9 KEVAHFDSRIHSSHVLEMKLTKVAMLICAGFLIAWIPYAVVSVWSAFGRPDSIPIQLSVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KEVAHFDSRIHSSHVLEMKLTKVAMLICAGFLIAWIPYAVVSVWSAFGRPDSIPIQLSVV
80 90 100 110 120 130
300 310 320 330 340 350
pF1KE9 PTLLAKSAAMYNPIIYQVIDYKFACCQTGGLKATKKKSLEGFRLHTVTTVRKSSAVLEIH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PTLLAKSAAMYNPIIYQVIDYKFACCQTGGLKATKKKSLEGFRLHTVTTVRKSSAVLEIH
140 150 160 170 180 190
pF1KE9 EEWE
::
XP_016 EEDKGRLWHQLSCGENSEMTASSETLGTKAHSPLQETREGENEAVGGNNKCSGCEECI
200 210 220 230 240 250
>>NP_006574 (OMIM: 605224) visual pigment-like receptor (337 aa)
initn: 567 init1: 368 opt: 595 Z-score: 568.8 bits: 113.7 E(85289): 6e-25
Smith-Waterman score: 595; 32.4% identity (65.9% similar) in 296 aa overlap (20-313:16-301)
10 20 30 40 50 60
pF1KE9 MALNHTALPQDERLPHYLRDGDPFASKLSWEADLVAGFYLTIIGILSTFGNGYVLYMSSR
::. :.. : ..:: :: . :..: ..: :: . .
NP_006 MLRNNLGNSSDSKNEDGSVFSQT---EHNIVAT-YLIMAGMISIISNIIVLGIFIK
10 20 30 40 50
70 80 90 100 110 120
pF1KE9 RKKKLRPAEIMTINLAVCDLGISVVGKPFTIISCFCHRWVFGWIGCRWYGWAGFFFGCGS
:. :.. . ::::: :.:.: .: :.. : . : ::. ::. :. ..::: .:
NP_006 YKELRTPTNAIIINLAVTDIGVSSIGYPMSAASDLYGSWKFGYAGCQVYAGLNIFFGMAS
60 70 80 90 100 110
130 140 150 160 170
pF1KE9 LITMTAVSLDRYLKICYLSYGVWLKRKHAYICLA-AIWAYASFWTTMPLVGLGDYVPEPF
. .:.:..:::: :: . : . ..:: : . : . ::. ::..: ..:.:.:
NP_006 IGLLTVVAVDRYLTICLPDVGRRMTT-NTYIGLILGAWINGLFWALMPIIGWASYAPDPT
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE9 GTSCTLDWWLAQASVGGQVFILNILFFCLLLPTAVIVFSYVKIIAKVKS-SSKEVAHFDS
:..::..: . : . . .... . ...: .:. . : .. ..: .... .. .
NP_006 GATCTINWRKNDRSFVS--YTMTVIAINFIVPLTVMFYCYYHVTLSIKHHTTSDCTESLN
180 190 200 210 220
240 250 260 270 280 290
pF1KE9 RIHSSHVLEMKLTKVAMLICAGFLIAWIPYAVVSVWSAFGRPDSIPIQLSVVPTLLAKSA
: :... :.. ...:: ::.:: ::..: .:..:: : .:: .... :.:::.
NP_006 RDWSDQIDVTKMS--VIMICM-FLVAWSPYSIVCLWASFGDPKKIPPPMAIIAPLFAKSS
230 240 250 260 270 280
300 310 320 330 340 350
pF1KE9 AMYNPIIYQVIDYKFACCQTGGLKATKKKSLEGFRLHTVTTVRKSSAVLEIHEEWE
..::: :: : . ::
NP_006 TFYNPCIYVVANKKFRRAMLAMFKCQTHQTMPVTSILPMDVSQNPLASGRI
290 300 310 320 330
354 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 06:44:47 2016 done: Sun Nov 6 06:44:48 2016
Total Scan time: 6.930 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]