FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE9434, 337 aa
  1>>>pF1KE9434 337 - 337 aa - 337 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3566+/-0.00092; mu= 15.5958+/- 0.055
 mean_var=161.4380+/-66.487, 0's: 0 Z-trim(105.7): 186  B-trim: 1138 in 2/45
 Lambda= 0.100942
 statistics sampled from 8150 (8565) to 8150 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.625), E-opt: 0.2 (0.263), width:  16
 Scan time:  2.710

The best scores are:                                      opt bits E(32554)
CCDS7636.1 GPR26 gene_id:2849|Hs108|chr10          ( 337) 2221 336.2 2.3e-92
CCDS3403.1 GPR78 gene_id:27201|Hs108|chr4          ( 363) 1105 173.7   2e-43


>>CCDS7636.1 GPR26 gene_id:2849|Hs108|chr10               (337 aa)
 initn: 2221 init1: 2221 opt: 2221  Z-score: 1771.6  bits: 336.2 E(32554): 2.3e-92
Smith-Waterman score: 2221; 100.0% identity (100.0% similar) in 337 aa overlap (1-337:1-337)

               10        20        30        40        50        60
pF1KE9 MNSWDAGLAGLLVGTMGVSLLSNALVLLCLLHSADIRRQAPALFTLNLTCGNLLCTVVNM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 MNSWDAGLAGLLVGTMGVSLLSNALVLLCLLHSADIRRQAPALFTLNLTCGNLLCTVVNM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 PLTLAGVVAQRQPAGDRLCRLAAFLDTFLAANSMLSMAALSIDRWVAVVFPLSYRAKMRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 PLTLAGVVAQRQPAGDRLCRLAAFLDTFLAANSMLSMAALSIDRWVAVVFPLSYRAKMRL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE9 RDAALMVAYTWLHALTFPAAALALSWLGFHQLYASCTLCSRRPDERLRFAVFTGAFHALS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 RDAALMVAYTWLHALTFPAAALALSWLGFHQLYASCTLCSRRPDERLRFAVFTGAFHALS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE9 FLLSFVVLCCTYLKVLKVARFHCKRIDVITMQTLVLLVDLHPSVRERCLEEQKRRRQRAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 FLLSFVVLCCTYLKVLKVARFHCKRIDVITMQTLVLLVDLHPSVRERCLEEQKRRRQRAT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE9 KKISTFIGTFLVCFAPYVITRLVELFSTVPIGSHWGVLSKCLAYSKAASDPFVYSLLRHQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 KKISTFIGTFLVCFAPYVITRLVELFSTVPIGSHWGVLSKCLAYSKAASDPFVYSLLRHQ
              250       260       270       280       290       300

              310       320       330       
pF1KE9 YRKSCKEILNRLLHRRSIHSSGLTGDSHSQNILPVSE
       :::::::::::::::::::::::::::::::::::::
CCDS76 YRKSCKEILNRLLHRRSIHSSGLTGDSHSQNILPVSE
              310       320       330       

>>CCDS3403.1 GPR78 gene_id:27201|Hs108|chr4               (363 aa)
 initn: 1140 init1: 1094 opt: 1105  Z-score: 893.0  bits: 173.7 E(32554): 2e-43
Smith-Waterman score: 1105; 52.3% identity (81.2% similar) in 329 aa overlap (1-323:1-327)

               10        20        30        40        50        60
pF1KE9 MNSWDAGLAGLLVGTMGVSLLSNALVLLCLLHSADIRRQAPALFTLNLTCGNLLCTVVNM
       :.  .: :::::: ...:.::::::::::  .::..: .: ... .::. :.:: ....:
CCDS34 MGPGEALLAGLLVMVLAVALLSNALVLLCCAYSAELRTRASGVLLVNLSLGHLLLAALDM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 PLTLAGVVAQRQPAGDRLCRLAAFLDTFLAANSMLSMAALSIDRWVAVVFPLSYRAKMRL
       :.:: ::.  : :..   :.. .:::::::.:. ::.:::: :.:.:: ::: : ...: 
CCDS34 PFTLLGVMRGRTPSAPGACQVIGFLDTFLASNAALSVAALSADQWLAVGFPLRYAGRLRP
               70        80        90       100       110       120

              130       140       150       160         170        
pF1KE9 RDAALMVAYTWLHALTFPAAALALSWLGFHQLYASCTLCSRRPDE--RLRFAVFTGAFHA
       : :.:... .: ..:.: .:::. ::::. . .:::.:  : : :  : :::.::...::
CCDS34 RYAGLLLGCAWGQSLAFSGAALGCSWLGYSSAFASCSL--RLPPEPERPRFAAFTATLHA
              130       140       150         160       170        

      180       190       200       210       220       230        
pF1KE9 LSFLLSFVVLCCTYLKVLKVARFHCKRIDVITMQTLVLLVDLHPSVRERCLEEQKRRRQR
       ..:.: ..::: : :.: .::: ::.:.:..::..:.::.:::::::.::: .:::::.:
CCDS34 VGFVLPLAVLCLTSLQVHRVARRHCQRMDTVTMKALALLADLHPSVRQRCLIQQKRRRHR
      180       190       200       210       220       230        

      240       250       260       270       280       290        
pF1KE9 ATKKISTFIGTFLVCFAPYVITRLVELFSTVPIGSHWGVLSKCLAYSKAASDPFVYSLLR
       ::.::.  :.:::.::::::.:::.::   : ....::.:::::.::::..:::.:::::
CCDS34 ATRKIGIAIATFLICFAPYVMTRLAELVPFVTVNAQWGILSKCLTYSKAVADPFTYSLLR
      240       250       260       270       280       290        

      300       310           320       330                        
pF1KE9 HQYRKSCKEILNRLLHRR----SIHSSGLTGDSHSQNILPVSE                 
       . .:.    ...:::.:     : :.:.:                               
CCDS34 RPFRQVLAGMVHRLLKRTPRPASTHDSSLDVAGMVHQLLKRTPRPASTHNGSVDTENDSC
      300       310       320       330       340       350        




337 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 15:19:15 2016 done: Sun Nov  6 15:19:15 2016
 Total Scan time:  2.710 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]