FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE9431, 609 aa
  1>>>pF1KE9431 609 - 609 aa - 609 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.4288+/-0.0011; mu= 0.0734+/- 0.067
 mean_var=392.6637+/-81.967, 0's: 0 Z-trim(114.8): 6  B-trim: 149 in 1/52
 Lambda= 0.064724
 statistics sampled from 15387 (15390) to 15387 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.769), E-opt: 0.2 (0.473), width:  16
 Scan time:  4.160

The best scores are:                                      opt bits E(32554)
CCDS64.1 GPR153 gene_id:387509|Hs108|chr1          ( 609) 4138 400.6 3.2e-111
CCDS8563.1 GPR162 gene_id:27239|Hs108|chr12        ( 588)  965 104.3 4.8e-22


>>CCDS64.1 GPR153 gene_id:387509|Hs108|chr1               (609 aa)
 initn: 4138 init1: 4138 opt: 4138  Z-score: 2110.3  bits: 400.6 E(32554): 3.2e-111
Smith-Waterman score: 4138; 99.8% identity (100.0% similar) in 609 aa overlap (1-609:1-609)

               10        20        30        40        50        60
pF1KE9 MSDERRLPGSAVGWLVCGGLSLLANAWGILSVGAKQKKWKPLEFLLCTLAATHMLNVAVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 MSDERRLPGSAVGWLVCGGLSLLANAWGILSVGAKQKKWKPLEFLLCTLAATHMLNVAVP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 IATYSVVQLRRQRPDFEWNEGLCKVFVSTFYTLTLATCFSVTSLSYHRMWMVCWPVNYRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 IATYSVVQLRRQRPDFEWNEGLCKVFVSTFYTLTLATCFSVTSLSYHRMWMVCWPVNYRL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE9 SNAKKQAVHTVMGIWMVSFILSALPAVGWHDTSERFYTHGCRFIVAEIGLGFGVCFLLLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 SNAKKQAVHTVMGIWMVSFILSALPAVGWHDTSERFYTHGCRFIVAEIGLGFGVCFLLLV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE9 GGSVAMGVICTAIALFQTLAVQVGRQADHRAFTVPTIVVEDAQGKRRSSIDGSEPAKTSL
       ::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::::
CCDS64 GGSVAMGVICTAIALFQTLAVQVGRQADRRAFTVPTIVVEDAQGKRRSSIDGSEPAKTSL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE9 QTTGLVTTIVFIYDCLMGFPVLVVSFSSLRADASAPWMALCVLWCSVAQALLLPVFLWAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 QTTGLVTTIVFIYDCLMGFPVLVVSFSSLRADASAPWMALCVLWCSVAQALLLPVFLWAC
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE9 DRYRADLKAVREKCMALMANDEESDDETSLEGGISPDLVLERSLDYGYGGDFVALDRMAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 DRYRADLKAVREKCMALMANDEESDDETSLEGGISPDLVLERSLDYGYGGDFVALDRMAK
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE9 YEISALEGGLPQLYPLRPLQEDKMQYLQVPPTRRFSHDDADVWAAVPLPAFLPRWGSGED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 YEISALEGGLPQLYPLRPLQEDKMQYLQVPPTRRFSHDDADVWAAVPLPAFLPRWGSGED
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE9 LAALAHLVLPAGPERRRASLLAFAEDAPPSRARRRSAESLLSLRPSALDSGPRGARDSPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 LAALAHLVLPAGPERRRASLLAFAEDAPPSRARRRSAESLLSLRPSALDSGPRGARDSPP
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE9 GSPRRRPGPGPRSASASLLPDAFALTAFECEPQALRRPPGPFPAAPAAPDGADPGEAPTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 GSPRRRPGPGPRSASASLLPDAFALTAFECEPQALRRPPGPFPAAPAAPDGADPGEAPTP
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE9 PSSAQRSPGPRPSAHSHAGSLRPGLSASWGEPGGLRAAGGGGSTSSFLSSPSESSGYATL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 PSSAQRSPGPRPSAHSHAGSLRPGLSASWGEPGGLRAAGGGGSTSSFLSSPSESSGYATL
              550       560       570       580       590       600

                
pF1KE9 HSDSLGSAS
       :::::::::
CCDS64 HSDSLGSAS
                

>>CCDS8563.1 GPR162 gene_id:27239|Hs108|chr12             (588 aa)
 initn: 1341 init1: 692 opt: 965  Z-score: 509.2  bits: 104.3 E(32554): 4.8e-22
Smith-Waterman score: 1606; 46.9% identity (70.8% similar) in 593 aa overlap (2-564:8-579)

                     10        20        30        40        50    
pF1KE9       MSDERRLPGSAVGWLVCGGLSLLANAWGILSVGAKQKKWKPLEFLLCTLAATHM
              ..:  : ..:..::.:: :.:::::: :::..:::.: ::::.::: ::.::.
CCDS85 MARGGAGAEEASLRSNALSWLACGLLALLANAWIILSISAKQQKHKPLELLLCFLAGTHI
               10        20        30        40        50        60

           60        70         80        90       100       110   
pF1KE9 LNVAVPIATYSVVQLRRQ-RPDFEWNEGLCKVFVSTFYTLTLATCFSVTSLSYHRMWMVC
       : .:::..:..:::::::   :..:::..:::::::.:::.:::::.:.:::::::::: 
CCDS85 LMAAVPLTTFAVVQLRRQASSDYDWNESICKVFVSTYYTLALATCFTVASLSYHRMWMVR
               70        80        90       100       110       120

           120       130       140       150       160       170   
pF1KE9 WPVNYRLSNAKKQAVHTVMGIWMVSFILSALPAVGWHDTSERFYTHGCRFIVAEIGLGFG
       ::::::::::::::.:.::::::::::::.::..:::...::.:..::.:::..::::::
CCDS85 WPVNYRLSNAKKQALHAVMGIWMVSFILSTLPSIGWHNNGERYYARGCQFIVSKIGLGFG
              130       140       150       160       170       180

           180       190                200       210              
pF1KE9 VCFLLLVGGSVAMGVICTAIALFQTL---------AVQVGRQADHRA-----------FT
       ::: ::. :...::..:.::...:::         : .::  .  .:           : 
CCDS85 VCFSLLLLGGIVMGLVCVAITFYQTLWARPRRARQARRVGGGGGTKAGGPGALGTRPAFE
              190       200       210       220       230       240

           220       230       240       250       260       270   
pF1KE9 VPTIVVEDAQGKRRSSIDGSEPAKTSLQTTGLVTTIVFIYDCLMGFPVLVVSFSSLRADA
       ::.::::::.::::::.:::: ::::::.:.::..:::.:: : : :.::::: ::..:.
CCDS85 VPAIVVEDARGKRRSSLDGSESAKTSLQVTNLVSAIVFLYDSLTGVPILVVSFFSLKSDS
              250       260       270       280       290       300

           280       290       300       310       320       330   
pF1KE9 SAPWMALCVLWCSVAQALLLPVFLWACDRYRADLKAVREKCMALMANDEESDDETSLEGG
       . :::.: :::::.::.:::: :.:.:.:::::...: :.:.:.:. .:..::.    ::
CCDS85 APPWMVLAVLWCSMAQTLLLPSFIWSCERYRADVRTVWEQCVAIMS-EEDGDDD----GG
              310       320       330       340        350         

           340       350       360       370       380       390   
pF1KE9 ISPDLVLERSLDYGYGGDFVALDRMAKYEISALEGGLPQLYPLRPLQEDKMQYLQVPPTR
          : .  :     . .. ..           :  :  .:.:  ::.  ...::::: .:
CCDS85 -CDDYAEGRVCKVRFDANGATGPGSRDPAQVKLLPGRHMLFP--PLE--RVHYLQVPLSR
          360       370       380       390           400       410

           400        410       420        430       440       450 
pF1KE9 RFSHDDADVWAAVPLP-AFLPRWGSGEDLAAL-AHLVLPAGPERRRASLLAFAEDAPPSR
       :.:::.......   : .:: .:.:..:. .: :.    .:: .  ..   . ..    .
CCDS85 RLSHDETNIFSTPREPGSFLHKWSSSDDIRVLPAQSRALGGPPEYLGQRHRLEDEEDEEE
              420       430       440       450       460       470

             460       470       480       490       500       510 
pF1KE9 ARRRSAESLLSLRPSALDSGPRGARDSPPGSPRRRPGPGPRSASASLLPDAFALTAFECE
       :.   . .: ::: . :.::  :   :  : ::   :::      . . :   : .    
CCDS85 AE---GGGLASLR-QFLESGVLG---SGGGPPR---GPGFFREEITTFIDETPLPSPTAS
                 480           490          500       510       520

             520            530       540         550       560    
pF1KE9 PQALRRPPGPFPAAP-----AAPDGADPGEAPTPPSSAQRSP--GPRPSAHSHAGSLRPG
       :    : : :.  .:     ..:..   :  :   :...:    : . ::.. .::  ::
CCDS85 PGHSPRRPRPLGLSPRRLSLGSPESRAVG-LPLGLSAGRRCSLTGGEESARAWGGSWGPG
              530       540        550       560       570         

          570       580       590       600         
pF1KE9 LSASWGEPGGLRAAGGGGSTSSFLSSPSESSGYATLHSDSLGSAS
                                                    
CCDS85 NPIFPQLTL                                    
     580                                            




609 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 17:57:41 2016 done: Mon Nov  7 17:57:42 2016
 Total Scan time:  4.160 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]