FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE9429, 353 aa
  1>>>pF1KE9429 353 - 353 aa - 353 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6687+/-0.00119; mu= 14.5314+/- 0.071
 mean_var=157.6089+/-58.318, 0's: 0 Z-trim(103.0): 149  B-trim: 992 in 2/49
 Lambda= 0.102161
 statistics sampled from 6976 (7226) to 6976 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.567), E-opt: 0.2 (0.222), width:  16
 Scan time:  2.520

The best scores are:                                      opt bits E(32554)
CCDS32398.1 GPR139 gene_id:124274|Hs108|chr16      ( 353) 2376 363.1  2e-100
CCDS11698.1 GPR142 gene_id:350383|Hs108|chr17      ( 462)  968 155.7   7e-38


>>CCDS32398.1 GPR139 gene_id:124274|Hs108|chr16           (353 aa)
 initn: 2376 init1: 2376 opt: 2376  Z-score: 1916.3  bits: 363.1 E(32554): 2e-100
Smith-Waterman score: 2376; 100.0% identity (100.0% similar) in 353 aa overlap (1-353:1-353)

               10        20        30        40        50        60
pF1KE9 MEHTHAHLAANSSLSWWSPGSACGLGFVPVVYYSLLLCLGLPANILTVIILSQLVARRQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MEHTHAHLAANSSLSWWSPGSACGLGFVPVVYYSLLLCLGLPANILTVIILSQLVARRQK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 SSYNYLLALAAADILVLFFIVFVDFLLEDFILNMQMPQVPDKIIEVLEFSSIHTSIWITV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SSYNYLLALAAADILVLFFIVFVDFLLEDFILNMQMPQVPDKIIEVLEFSSIHTSIWITV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE9 PLTIDRYIAVCHPLKYHTVSYPARTRKVIVSVYITCFLTSIPYYWWPNIWTEDYISTSVH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 PLTIDRYIAVCHPLKYHTVSYPARTRKVIVSVYITCFLTSIPYYWWPNIWTEDYISTSVH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE9 HVLIWIHCFTVYLVPCSIFFILNSIIVYKLRRKSNFRLRGYSTGKTTAILFTITSIFATL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 HVLIWIHCFTVYLVPCSIFFILNSIIVYKLRRKSNFRLRGYSTGKTTAILFTITSIFATL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE9 WAPRIIMILYHLYGAPIQNRWLVHIMSDIANMLALLNTAINFFLYCFISKRFRTMAAATL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 WAPRIIMILYHLYGAPIQNRWLVHIMSDIANMLALLNTAINFFLYCFISKRFRTMAAATL
              250       260       270       280       290       300

              310       320       330       340       350   
pF1KE9 KAFFKCQKQPVQFYTNHNFSITSSPWISPANSHCIKMLVYQYDKNGKPIKVSP
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 KAFFKCQKQPVQFYTNHNFSITSSPWISPANSHCIKMLVYQYDKNGKPIKVSP
              310       320       330       340       350   

>>CCDS11698.1 GPR142 gene_id:350383|Hs108|chr17           (462 aa)
 initn: 938 init1: 646 opt: 968  Z-score: 793.5  bits: 155.7 E(32554): 7e-38
Smith-Waterman score: 968; 45.7% identity (77.8% similar) in 293 aa overlap (21-310:151-442)

                         10        20        30        40        50
pF1KE9           MEHTHAHLAANSSLSWWSPGSACGLGFVPVVYYSLLLCLGLPANILTVII
                                     : :  : .::.:::.:: ::::...::.. 
CCDS11 GQPRVTLLPTPHVSGLSQEFESHWPEIAERSPCVAGVIPVIYYSVLLGLGLPVSLLTAVA
              130       140       150       160       170       180

               60        70        80        90       100       110
pF1KE9 LSQLVARRQKSSYNYLLALAAADILVLFFIVFVDFLLEDFILNMQMPQVPDKIIEVLEFS
       :..:..: .. :: :::::.:.::..   :::. :::.  .:  :.::.  .  ..:::.
CCDS11 LARLATRTRRPSYYYLLALTASDIIIQVVIVFAGFLLQGAVLARQVPQAVVRTANILEFA
              190       200       210       220       230       240

              120       130       140       150       160       170
pF1KE9 SIHTSIWITVPLTIDRYIAVCHPLKYHTVSYPARTRKVIVSVYITCFLTSIPYYWWPNIW
       . :.:.::.. ::.::: :.::::.....: :.:::..:..:  . .::.::.::: ..:
CCDS11 ANHASVWIAILLTVDRYTALCHPLHHRAASSPGRTRRAIAAVLSAALLTGIPFYWWLDMW
              250       260       270       280       290       300

              180       190       200       210       220       230
pF1KE9 TEDYISTSVHHVLIWIHCFTVYLVPCSIFFILNSIIVYKLRRKSNFRLRGYSTGKTTAIL
        .     .. .:: : ::.:::..::..:.. :: :...:::..   :.   .::.::::
CCDS11 RDTDSPRTLDEVLKWAHCLTVYFIPCGVFLVTNSAIIHRLRRRGRSGLQPR-VGKSTAIL
              310       320       330       340       350          

              240       250       260       270       280       290
pF1KE9 FTITSIFATLWAPRIIMILYHLYGAPIQNRWLVHIMSDIANMLALLNTAINFFLYCFISK
       . ::..:. :::::....:::.: ::..  : ::.  :.:::.:.:.:: :: ::::.::
CCDS11 LGITTLFTLLWAPRVFVMLYHMYVAPVHRDWRVHLALDVANMVAMLHTAANFGLYCFVSK
     360       370       380       390       400       410         

              300          310       320       330       340       
pF1KE9 RFRTMAAATLK-AFFKCQ--KQPVQFYTNHNFSITSSPWISPANSHCIKMLVYQYDKNGK
        ::. .  ... :.. :   .::                                     
CCDS11 TFRATVRQVIHDAYLPCTLASQPEGMAAKPVMEPPGLPTGAEV                 
     420       430       440       450       460                   




353 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 12:19:42 2016 done: Sun Nov  6 12:19:42 2016
 Total Scan time:  2.520 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]