Result of FASTA (omim) for
pFN21AE9428
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE9428, 399 aa
1>>>pF1KE9428 399 - 399 aa - 399 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.6283+/-0.000343; mu= 12.1242+/- 0.021
mean_var=115.3579+/-23.442, 0's: 0 Z-trim(117.8): 15 B-trim: 0 in 0/51
Lambda= 0.119413
statistics sampled from 30117 (30131) to 30117 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.696), E-opt: 0.2 (0.353), width: 16
Scan time: 8.740
The best scores are: opt bits E(85289)
NP_003263 (OMIM: 604658) integral membrane protein ( 399) 2706 476.9 3.8e-134
XP_016857698 (OMIM: 604658) PREDICTED: integral me ( 379) 2459 434.3 2.4e-121
XP_016857699 (OMIM: 604658) PREDICTED: integral me ( 356) 1864 331.8 1.6e-90
>>NP_003263 (OMIM: 604658) integral membrane protein GPR (399 aa)
initn: 2706 init1: 2706 opt: 2706 Z-score: 2529.3 bits: 476.9 E(85289): 3.8e-134
Smith-Waterman score: 2706; 100.0% identity (100.0% similar) in 399 aa overlap (1-399:1-399)
10 20 30 40 50 60
pF1KE9 MRPERPRPRGSAPGPMETPPWDPARNDSLPPTLTPAVPPYVKLGLTVVYTVFYALLFVFI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MRPERPRPRGSAPGPMETPPWDPARNDSLPPTLTPAVPPYVKLGLTVVYTVFYALLFVFI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE9 YVQLWLVLRYRHKRLSYQSVFLFLCLFWASLRTVLFSFYFKDFVAANSLSPFVFWLLYCF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 YVQLWLVLRYRHKRLSYQSVFLFLCLFWASLRTVLFSFYFKDFVAANSLSPFVFWLLYCF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE9 PVCLQFFTLTLMNLYFTQVIFKAKSKYSPELLKYRLPLYLASLFISLVFLLVNLTCAVLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 PVCLQFFTLTLMNLYFTQVIFKAKSKYSPELLKYRLPLYLASLFISLVFLLVNLTCAVLV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE9 KTGNWERKVIVSVRVAINDTLFVLCAVSLSICLYKISKMSLANIYLESKGSSVCQVTAIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 KTGNWERKVIVSVRVAINDTLFVLCAVSLSICLYKISKMSLANIYLESKGSSVCQVTAIG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE9 VTVILLYTSRACYNLFILSFSQNKSVHSFDYDWYNVSDQADLKNQLGDAGYVLFGVVLFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 VTVILLYTSRACYNLFILSFSQNKSVHSFDYDWYNVSDQADLKNQLGDAGYVLFGVVLFV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE9 WELLPTTLVVYFFRVRNPTKDLTNPGMVPSHGFSPRSYFFDNPRRYDSDDDLAWNIAPQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 WELLPTTLVVYFFRVRNPTKDLTNPGMVPSHGFSPRSYFFDNPRRYDSDDDLAWNIAPQG
310 320 330 340 350 360
370 380 390
pF1KE9 LQGGFAPDYYDWGQQTNSFLAQAGTLQDSTLDPDKPSLG
:::::::::::::::::::::::::::::::::::::::
NP_003 LQGGFAPDYYDWGQQTNSFLAQAGTLQDSTLDPDKPSLG
370 380 390
>>XP_016857698 (OMIM: 604658) PREDICTED: integral membra (379 aa)
initn: 2459 init1: 2459 opt: 2459 Z-score: 2299.7 bits: 434.3 E(85289): 2.4e-121
Smith-Waterman score: 2459; 100.0% identity (100.0% similar) in 364 aa overlap (1-364:1-364)
10 20 30 40 50 60
pF1KE9 MRPERPRPRGSAPGPMETPPWDPARNDSLPPTLTPAVPPYVKLGLTVVYTVFYALLFVFI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MRPERPRPRGSAPGPMETPPWDPARNDSLPPTLTPAVPPYVKLGLTVVYTVFYALLFVFI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE9 YVQLWLVLRYRHKRLSYQSVFLFLCLFWASLRTVLFSFYFKDFVAANSLSPFVFWLLYCF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YVQLWLVLRYRHKRLSYQSVFLFLCLFWASLRTVLFSFYFKDFVAANSLSPFVFWLLYCF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE9 PVCLQFFTLTLMNLYFTQVIFKAKSKYSPELLKYRLPLYLASLFISLVFLLVNLTCAVLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PVCLQFFTLTLMNLYFTQVIFKAKSKYSPELLKYRLPLYLASLFISLVFLLVNLTCAVLV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE9 KTGNWERKVIVSVRVAINDTLFVLCAVSLSICLYKISKMSLANIYLESKGSSVCQVTAIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KTGNWERKVIVSVRVAINDTLFVLCAVSLSICLYKISKMSLANIYLESKGSSVCQVTAIG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE9 VTVILLYTSRACYNLFILSFSQNKSVHSFDYDWYNVSDQADLKNQLGDAGYVLFGVVLFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VTVILLYTSRACYNLFILSFSQNKSVHSFDYDWYNVSDQADLKNQLGDAGYVLFGVVLFV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE9 WELLPTTLVVYFFRVRNPTKDLTNPGMVPSHGFSPRSYFFDNPRRYDSDDDLAWNIAPQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 WELLPTTLVVYFFRVRNPTKDLTNPGMVPSHGFSPRSYFFDNPRRYDSDDDLAWNIAPQG
310 320 330 340 350 360
370 380 390
pF1KE9 LQGGFAPDYYDWGQQTNSFLAQAGTLQDSTLDPDKPSLG
::::
XP_016 LQGGDRSTEEKLGEYMLSQ
370
>>XP_016857699 (OMIM: 604658) PREDICTED: integral membra (356 aa)
initn: 1864 init1: 1864 opt: 1864 Z-score: 1746.1 bits: 331.8 E(85289): 1.6e-90
Smith-Waterman score: 2326; 89.2% identity (89.2% similar) in 399 aa overlap (1-399:1-356)
10 20 30 40 50 60
pF1KE9 MRPERPRPRGSAPGPMETPPWDPARNDSLPPTLTPAVPPYVKLGLTVVYTVFYALLFVFI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MRPERPRPRGSAPGPMETPPWDPARNDSLPPTLTPAVPPYVKLGLTVVYTVFYALLFVFI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE9 YVQLWLVLRYRHKRLSYQSVFLFLCLFWASLRTVLFSFYFKDFVAANSLSPFVFWLLYCF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YVQLWLVLRYRHKRLSYQSVFLFLCLFWASLRTVLFSFYFKDFVAANSLSPFVFWLLYCF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE9 PVCLQFFTLTLMNLYFTQVIFKAKSKYSPELLKYRLPLYLASLFISLVFLLVNLTCAVLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PVCLQFFTLTLMNLYFTQVIFKAKSKYSPELLKYRLPLYLASLFISLVFLLVNLTCAVLV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE9 KTGNWERKVIVSVRVAINDTLFVLCAVSLSICLYKISKMSLANIYLESKGSSVCQVTAIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KTGNWERKVIVSVRVAINDTLFVLCAVSLSICLYKISKMSLANIYLESKGSSVCQVTAIG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE9 VTVILLYTSRACYNLFILSFSQNKSVHSFDYDWYNVSDQADLKNQLGDAGYVLFGVVLFV
:::::::::::::::::::::::::::::::::::::::
XP_016 VTVILLYTSRACYNLFILSFSQNKSVHSFDYDWYNVSDQ---------------------
250 260 270
310 320 330 340 350 360
pF1KE9 WELLPTTLVVYFFRVRNPTKDLTNPGMVPSHGFSPRSYFFDNPRRYDSDDDLAWNIAPQG
::::::::::::::::::::::::::::::::::::::
XP_016 ----------------------TNPGMVPSHGFSPRSYFFDNPRRYDSDDDLAWNIAPQG
280 290 300 310
370 380 390
pF1KE9 LQGGFAPDYYDWGQQTNSFLAQAGTLQDSTLDPDKPSLG
:::::::::::::::::::::::::::::::::::::::
XP_016 LQGGFAPDYYDWGQQTNSFLAQAGTLQDSTLDPDKPSLG
320 330 340 350
399 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 18:37:44 2016 done: Sun Nov 6 18:37:46 2016
Total Scan time: 8.740 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]