Result of FASTA (ccds) for
pFN21AE9412
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE9412, 309 aa
1>>>pF1KE9412 309 - 309 aa - 309 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2534+/-0.000886; mu= 15.6789+/- 0.052
mean_var=139.0309+/-46.309, 0's: 0 Z-trim(106.5): 201 B-trim: 1191 in 2/47
Lambda= 0.108772
statistics sampled from 8627 (8999) to 8627 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.623), E-opt: 0.2 (0.276), width: 16
Scan time: 2.560
The best scores are: opt bits E(32554)
CCDS2541.1 GPR35 gene_id:2859|Hs108|chr2 ( 309) 2063 335.8 2.6e-92
CCDS56174.1 GPR35 gene_id:2859|Hs108|chr2 ( 340) 2063 335.8 2.7e-92
CCDS2480.1 GPR55 gene_id:9290|Hs108|chr2 ( 319) 510 92.1 6.1e-19
CCDS2148.1 GPR17 gene_id:2840|Hs108|chr2 ( 367) 411 76.6 3.1e-14
CCDS9235.1 HCAR2 gene_id:338442|Hs108|chr12 ( 363) 368 69.9 3.3e-12
CCDS10429.1 SSTR5 gene_id:6755|Hs108|chr16 ( 364) 367 69.7 3.7e-12
CCDS14441.1 LPAR4 gene_id:2846|Hs108|chrX ( 370) 361 68.8 7.2e-12
CCDS1405.1 GPR25 gene_id:2848|Hs108|chr1 ( 361) 359 68.5 8.8e-12
CCDS53842.1 HCAR3 gene_id:8843|Hs108|chr12 ( 387) 351 67.3 2.2e-11
CCDS9236.1 HCAR1 gene_id:27198|Hs108|chr12 ( 346) 346 66.4 3.6e-11
>>CCDS2541.1 GPR35 gene_id:2859|Hs108|chr2 (309 aa)
initn: 2063 init1: 2063 opt: 2063 Z-score: 1770.8 bits: 335.8 E(32554): 2.6e-92
Smith-Waterman score: 2063; 99.7% identity (99.7% similar) in 309 aa overlap (1-309:1-309)
10 20 30 40 50 60
pF1KE9 MNGTYNTCGSSDLTWPPAIKLGFYAYLGVLLVLGLLLNSLALWVFCCRMQQWTETRIYMT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 MNGTYNTCGSSDLTWPPAIKLGFYAYLGVLLVLGLLLNSLALWVFCCRMQQWTETRIYMT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE9 NLAVADLCLLCTLPFVLHSLRDTSDTPLCQLSQGIYLTNRYMSISLVTAIAVDRYVAVRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 NLAVADLCLLCTLPFVLHSLRDTSDTPLCQLSQGIYLTNRYMSISLVTAIAVDRYVAVRH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE9 PLRARGLRSPRQAAAVCAVLWVLVIGSLVARWLLGIQEGGFCFRSTRHNFNSMAFPLLGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 PLRARGLRSPRQAAAVCAVLWVLVIGSLVARWLLGIQEGGFCFRSTRHNFNSMAFPLLGF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE9 YLPLAVVVFCSLKVVTALAQRPPTDVGQAEATRKAARMVWANLLVFVVCFLPLHVGLTVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 YLPLAVVVFCSLKVVTALAQRPPTDVGQAEATRKAARMVWANLLVFVVCFLPLHVGLTVR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE9 LAVGWNACALLETIRRALYITSKLSDANCCLDAICYYYMAKEFQEASALAVAPRAKAHKS
::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::
CCDS25 LAVGWNACALLETIRRALYITSKLSDANCCLDAICYYYMAKEFQEASALAVAPSAKAHKS
250 260 270 280 290 300
pF1KE9 QDSLCVTLA
:::::::::
CCDS25 QDSLCVTLA
>>CCDS56174.1 GPR35 gene_id:2859|Hs108|chr2 (340 aa)
initn: 2063 init1: 2063 opt: 2063 Z-score: 1770.4 bits: 335.8 E(32554): 2.7e-92
Smith-Waterman score: 2063; 99.7% identity (99.7% similar) in 309 aa overlap (1-309:32-340)
10 20 30
pF1KE9 MNGTYNTCGSSDLTWPPAIKLGFYAYLGVL
::::::::::::::::::::::::::::::
CCDS56 LSGSRAVPTPHRGSEELLKYMLHSPCVSLTMNGTYNTCGSSDLTWPPAIKLGFYAYLGVL
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE9 LVLGLLLNSLALWVFCCRMQQWTETRIYMTNLAVADLCLLCTLPFVLHSLRDTSDTPLCQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 LVLGLLLNSLALWVFCCRMQQWTETRIYMTNLAVADLCLLCTLPFVLHSLRDTSDTPLCQ
70 80 90 100 110 120
100 110 120 130 140 150
pF1KE9 LSQGIYLTNRYMSISLVTAIAVDRYVAVRHPLRARGLRSPRQAAAVCAVLWVLVIGSLVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 LSQGIYLTNRYMSISLVTAIAVDRYVAVRHPLRARGLRSPRQAAAVCAVLWVLVIGSLVA
130 140 150 160 170 180
160 170 180 190 200 210
pF1KE9 RWLLGIQEGGFCFRSTRHNFNSMAFPLLGFYLPLAVVVFCSLKVVTALAQRPPTDVGQAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 RWLLGIQEGGFCFRSTRHNFNSMAFPLLGFYLPLAVVVFCSLKVVTALAQRPPTDVGQAE
190 200 210 220 230 240
220 230 240 250 260 270
pF1KE9 ATRKAARMVWANLLVFVVCFLPLHVGLTVRLAVGWNACALLETIRRALYITSKLSDANCC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 ATRKAARMVWANLLVFVVCFLPLHVGLTVRLAVGWNACALLETIRRALYITSKLSDANCC
250 260 270 280 290 300
280 290 300
pF1KE9 LDAICYYYMAKEFQEASALAVAPRAKAHKSQDSLCVTLA
::::::::::::::::::::::: :::::::::::::::
CCDS56 LDAICYYYMAKEFQEASALAVAPSAKAHKSQDSLCVTLA
310 320 330 340
>>CCDS2480.1 GPR55 gene_id:9290|Hs108|chr2 (319 aa)
initn: 471 init1: 173 opt: 510 Z-score: 453.6 bits: 92.1 E(32554): 6.1e-19
Smith-Waterman score: 510; 36.9% identity (61.2% similar) in 268 aa overlap (31-284:31-296)
10 20 30 40 50
pF1KE9 MNGTYNTCGSSDLTWPPAIKLGFYAYLGVLLVLGLLLNSLALWVFCCRMQ-QWTE---TR
.::::::: ::. : .. .: . :
CCDS24 MSQQNTSGDCLFDGVNELMKTLQFAVHIPTFVLGLLLNLLAIHGFSTFLKNRWPDYAATS
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE9 IYMTNLAVADLCLLCTLPFVLHSLRDTSDTP-LCQLSQGIYLTNRYMSISLVTAIAVDRY
::: :::: :: :. .::: . . : : :: : . .:... : :. . :..::.
CCDS24 IYMINLAVFDLLLVLSLPFKMVLSQVQSPFPSLCTLVECLYFVSMYGSVFTICFISMDRF
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE9 VAVRHPLRARGLRSPRQAAAVCAVLWVLV-IGSLVARWLLGIQEGGFCFRSTRHNFNSMA
.:.:.:: . :::::. ..: ..:::: ::. . : : .::.. . :
CCDS24 LAIRYPLLVSHLRSPRKIFGICCTIWVLVWTGSIPIYSFHGKVEKYMCFHNMSDDTWSAK
130 140 150 160 170 180
180 190 200 210 220
pF1KE9 --FPL--LGFYLPLAVVVFCSLKVVTALAQRPPTDVGQAEATRKAA-RMVWANLLVFVVC
::: .:: ::.... :: . . : : : : . .:: . :.: ::::
CCDS24 VFFPLEVFGFLLPMGIMGFCCSRSIHILLGR--RDHTQDWVQQKACIYSIAASLAVFVVS
190 200 210 220 230
230 240 250 260 270 280
pF1KE9 FLPLHVGLTVRLAVGWN---ACALLETIRRALYITSKLSDANCCLDAICYYYMAKEFQEA
:::.:.:. ... : . : ..: : .. .:..:::::..:::.. :::.
CCDS24 FLPVHLGFFLQFLVRNSFIVECRAKQSISFFLQLSMCFSNVNCCLDVFCYYFVIKEFRMN
240 250 260 270 280 290
290 300
pF1KE9 SALAVAPRAKAHKSQDSLCVTLA
CCDS24 IRAHRPSRVQLVLQDTTISRG
300 310
>>CCDS2148.1 GPR17 gene_id:2840|Hs108|chr2 (367 aa)
initn: 375 init1: 132 opt: 411 Z-score: 369.0 bits: 76.6 E(32554): 3.1e-14
Smith-Waterman score: 412; 30.1% identity (57.9% similar) in 299 aa overlap (4-286:47-335)
10 20 30
pF1KE9 MNGTYNTCGSSDLTWPPAIKLGFYAYLGVLLVL
: . ::. : .. : .. . ..:
CCDS21 MLKLSGSDSSQSMNGLEVAPPGLITNFSLATAEQCGQE----TPLENMLFASFYLLDFIL
20 30 40 50 60 70
40 50 60 70 80
pF1KE9 GLLLNSLALWVFCCRMQQWTETRIYMTNLAVADLCLLCTLPFVLHSLRDTSDTPL----C
.:. :.::::.: .. : . ... .:::::: . .:: : . . :. :
CCDS21 ALVGNTLALWLFIRDHKSGTPANVFLMHLAVADLSCVLVLPTRLVYHFSGNHWPFGEIAC
80 90 100 110 120 130
90 100 110 120 130 140
pF1KE9 QLSQGIYLTNRYMSISLVTAIAVDRYVAVRHPLRARGLRSPRQAAAVCAVLWVLVIGS--
.:. .. : : :: ..: :..::..:. ::... :: : : .:: :::.: .
CCDS21 RLTGFLFYLNMYASIYFLTCISADRFLAIVHPVKSLKLRRPLYAHLACAFLWVVVAVAMA
140 150 160 170 180 190
150 160 170 180 190 200
pF1KE9 --LVARWLLGIQEGGFCF-----RSTRHNFNSMAFPLLGFYLPLAVVVFCSLKVVTALAQ
::. . .. :. ....: . :.: ..: .:. ..: : : .. .:
CCDS21 PLLVSPQTVQTNHTVVCLQLYREKASHHALVSLA---VAFTFPFITTVTCYLLIIRSL--
200 210 220 230 240
210 220 230 240 250
pF1KE9 RPPTDVGQAEATRKAARMVWANLLVFVVCFLPLHVGLTVRLA---VGWNACALLETIRRA
: : . : ::.::. : .:.:::.: ::. .: . .:: . . :
CCDS21 RQGLRVEKRLKT-KAVRMIAIVLAIFLVCFVPYHVNRSVYVLHYRSHGASCATQRILALA
250 260 270 280 290 300
260 270 280 290 300
pF1KE9 LYITSKLSDANCCLDAICYYYMAKEFQEASALAVAPRAKAHKSQDSLCVTLA
::: :.. : :: : :...:..:..:
CCDS21 NRITSCLTSLNGALDPIMYFFVAEKFRHALCNLLCGKRLKGPPPSFEGKTNESSLSAKSE
310 320 330 340 350 360
>>CCDS9235.1 HCAR2 gene_id:338442|Hs108|chr12 (363 aa)
initn: 480 init1: 193 opt: 368 Z-score: 332.6 bits: 69.9 E(32554): 3.3e-12
Smith-Waterman score: 510; 34.5% identity (62.2% similar) in 275 aa overlap (27-283:34-301)
10 20 30 40 50
pF1KE9 MNGTYNTCGSSDLTWPPAIKLGFYAYLGVLLVLGLLLNSLALWVFCCRMQQWTETR
::. ...::: :.::::.:: ....: .:
CCDS92 HHLQDHFLEIDKKNCCVFRDDFIVKVLPPVLGLEFIFGLLGNGLALWIFCFHLKSWKSSR
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE9 IYMTNLAVADLCLLCTLPFVLHS-LR----DTSDTPLCQLSQGIYLTNRYMSISLVTAIA
:.. ::::::. :. :::.. . .: .: : :.: . :: :: ..:..:
CCDS92 IFLFNLAVADFLLIICLPFLMDNYVRRWDWKFGDIP-CRLMLFMLAMNRQGSIIFLTVVA
70 80 90 100 110 120
120 130 140 150 160
pF1KE9 VDRYVAVRHPLRARGLRSPRQAAAVCAVLWVLVIGSLVA--RWLLGIQEGG--FCFR-ST
:::: : :: .: . : : :: . .:: ..:: : . . ::.:: .: :
CCDS92 VDRYFRVVHPHHALNKISNRTAAIISCLLWGITIGLTVHLLKKKMPIQNGGANLCSSFSI
130 140 150 160 170 180
170 180 190 200 210 220
pF1KE9 RHNFN-SMAFPLLGFYLPLAVVVFCSLKVVTALAQRPPTDVGQAEATRKAARMVWANLLV
:.:. :. :: :.:::....::: ... .: :: .. . ..: .. . .:
CCDS92 CHTFQWHEAMFLLEFFLPLGIILFCSARIIWSLRQR---QMDRHAKIKRAITFIMVVAIV
190 200 210 220 230
230 240 250 260 270
pF1KE9 FVVCFLPLHVGLTVRLAVGW-------NACALLETIRRALYITSKLSDANCCLDAICYYY
::.:::: ...::. . : . : . ... :..:: ... : :: . ::.
CCDS92 FVICFLP---SVVVRIRIFWLLHTSGTQNCEVYRSVDLAFFITLSFTYMNSMLDPVVYYF
240 250 260 270 280 290
280 290 300
pF1KE9 MAKEFQEASALAVAPRAKAHKSQDSLCVTLA
. :
CCDS92 SSPSFPNFFSTLINRCLQRKMTGEPDNNRSTSVELTGDPNKTRGAPEALMANSGEPWSPS
300 310 320 330 340 350
>>CCDS10429.1 SSTR5 gene_id:6755|Hs108|chr16 (364 aa)
initn: 370 init1: 142 opt: 367 Z-score: 331.7 bits: 69.7 E(32554): 3.7e-12
Smith-Waterman score: 367; 32.3% identity (56.1% similar) in 303 aa overlap (3-286:18-314)
10 20 30 40
pF1KE9 MNGTYNTCGSSDLTWPPAIKLGFYAYLGVLLVL-----GLLLNSL
:. . :.. :: . : : : .: : :: :.:
CCDS10 MEPLFPASTPSWNASSPGAASGGGDNRTLVGPAPSAGARAVLVPVLYLLVCAAGLGGNTL
10 20 30 40 50 60
50 60 70 80 90
pF1KE9 ALWVFCCRMQQWTETRIYMTNLAVADLCLLCTLPFVLHSLRDTSDTP----LCQLSQGIY
...: .. : : ::. ::::::. . ::: : . .: : ::.: . .
CCDS10 VIYVVLRFAKMKTVTNIYILNLAVADVLYMLGLPF-LATQNAASFWPFGPVLCRLVMTLD
70 80 90 100 110
100 110 120 130 140 150
pF1KE9 LTNRYMSISLVTAIAVDRYVAVRHPLRARGLRSPRQAAAVCAVLWVLVIG-SLVARWLLG
.:.. :. .:...::::.:: ::: . : :: : . :. ::: . :: .
CCDS10 GVNQFTSVFCLTVMSVDRYLAVVHPLSSARWRRPRVAKLASAAAWVLSLCMSLPLLVFAD
120 130 140 150 160 170
160 170 180 190 200
pF1KE9 IQEGGFCFRSTRHNFN--SMAF----PLLGFYLPLAVVVFCSLKVVTALAQRPPTDVG--
.:::: : : . . . .: .:::. :: :. .: : .:. . . . ::
CCDS10 VQEGGTCNASWPEPVGLWGAVFIIYTAVLGFFAPLLVICLCYLLIVVKV-RAAGVRVGCV
180 190 200 210 220 230
210 220 230 240 250 260
pF1KE9 QAEATRKAARMVWANLLVFVVCFLPLHVGLTVRLAVGWNACALLETIRRALYI-TSKLSD
. .. ::..::: . .:::. :.::. . : :::. : .::. . ::
CCDS10 RRRSERKVTRMVLVVVLVFAGCWLPFFTVNIVNLAVALPQ----EPASAGLYFFVVILSY
240 250 260 270 280 290
270 280 290 300
pF1KE9 ANCCLDAICYYYMAKEFQEASALAVAPRAKAHKSQDSLCVTLA
:: : . . : ... .:...
CCDS10 ANSCANPVLYGFLSDNFRQSFQKVLCLRKGSGAKDADATEPRPDRIRQQQEATPPAHRAA
300 310 320 330 340 350
>>CCDS14441.1 LPAR4 gene_id:2846|Hs108|chrX (370 aa)
initn: 513 init1: 194 opt: 361 Z-score: 326.5 bits: 68.8 E(32554): 7.2e-12
Smith-Waterman score: 524; 35.1% identity (66.7% similar) in 282 aa overlap (25-286:44-321)
10 20 30 40 50
pF1KE9 MNGTYNTCGSSDLTWPPAIKLGFYAYLGVLLVLGLLLNSLALWVFCCRMQQWTE
: .:...:::. ::..:.::: ::.. .:
CCDS14 SNSSLRPRLGNATANNTCIVDDSFKYNLNGAVYSVVFILGLITNSVSLFVFCFRMKMRSE
20 30 40 50 60 70
60 70 80 90 100 110
pF1KE9 TRIYMTNLAVADLCLLCTLPF-VLHSLR---DTSDTPLCQLSQGIYLTNRYMSISLVTAI
: :..:::::.:: ..::::: ..... .:: ::..: .::: : :. ..: :
CCDS14 TAIFITNLAVSDLLFVCTLPFKIFYNFNRHWPFGDT-LCKISGTAFLTNIYGSMLFLTCI
80 90 100 110 120 130
120 130 140 150 160
pF1KE9 AVDRYVAVRHPLRARGLRSPRQAAAVCAVLWVLVIGSLVARWLLGIQE---------GGF
.:::..:. .:.:.: .:. :..: ::: .:.::... .. :.. . ::
CCDS14 SVDRFLAIVYPFRSRTIRTRRNSAIVCAGVWILVLSGGISASLFSTTNVNNATTTCFEGF
140 150 160 170 180 190
170 180 190 200 210
pF1KE9 CFRSTRHNFNSMAF--PLLGFYLPLAVVVFCSLKVVTALAQRPPTDVGQAEATRKAA-RM
: . ...... ..:: .:: . : :: :. .: : :. ..: ...: . .:
CCDS14 SKRVWKTYLSKITIFIEVVGFIIPLILNVSCSSVVLRTL--RKPATLSQIGTNKKKVLKM
200 210 220 230 240 250
220 230 240 250 260 270
pF1KE9 VWANLLVFVVCFLPLHVGLTVRLAVGWNA---CALLETIRRALY-ITSKLSDANCCLDAI
. ... ::::::.: . : . : .: : .:: . . .: :: :. :::.: .
CCDS14 ITVHMAVFVVCFVPYNSVLFLYALVRSQAITNC-FLERFAKIMYPITLCLATLNCCFDPF
260 270 280 290 300
280 290 300
pF1KE9 CYYYMAKEFQEASALAVAPRAKAHKSQDSLCVTLA
::. . ::..
CCDS14 IYYFTLESFQKSFYINAHIRMESLFKTETPLTTKPSLPAIQEEVSDQTTNNGGELMLEST
310 320 330 340 350 360
>>CCDS1405.1 GPR25 gene_id:2848|Hs108|chr1 (361 aa)
initn: 259 init1: 136 opt: 359 Z-score: 325.0 bits: 68.5 E(32554): 8.8e-12
Smith-Waterman score: 364; 32.5% identity (58.3% similar) in 302 aa overlap (9-289:23-319)
10 20 30 40
pF1KE9 MNGTYNTCGSSDLTWPPAIKLGF-YAYLGVL----LVLGLLLNSLA
: .: :: : . :.:. .: ...::: :...
CCDS14 MAPTEPWSPSPGSAPWDYSGLDGLEELELCPAGDLPYGYVYIPALYLAAFAVGLLGNAFV
10 20 30 40 50 60
50 60 70 80 90
pF1KE9 LWVFCCRMQQWTETRIYMTNLAVADLCLLCTLPFVLHSLRDTSDTP----LCQLSQGIYL
.:.. : . .. .::.::: .. :::. . . : ::.::.
CCDS14 VWLLAGRRGPRRLVDTFVLHLAAADLGFVLTLPLWAAAAALGGRWPFGDGLCKLSSFALA
70 80 90 100 110 120
100 110 120 130 140 150
pF1KE9 TNRYMSISLVTAIAVDRYVAVRHPLRARGLRSPRQAAAVCAVLWV--LVIG--SLVARWL
.: . :.....::::.:: . :.:: ::.:: : : : .:. :. : ::: : :
CCDS14 GTRCAGALLLAGMSVDRYLAVVKLLEARPLRTPRCALASCCGVWAVALLAGLPSLVYRGL
130 140 150 160 170 180
160 170 180 190 200
pF1KE9 LGIQEG--GFCFRSTRHNFN--SMAFPLLGFYLPLAVVVFCSLKVVTALAQRPPTDVGQA
. : . : . : :. :. . :: : :::.:..:: .. : .::: ::.:
CCDS14 QPLPGGQDSQCGEEPSHAFQGLSLLLLLLTFVLPLVVTLFCYCRISRRL-RRPP-HVGRA
190 200 210 220 230
210 220 230 240 250 260
pF1KE9 EATRKAARMVWANLLVFVVCFLPLHVGLTV----RLAVGWNACALLETIRRALYITSKLS
. :.. :...: .:: .::. . .: ::.. : :: ..: .: :.. :.
CCDS14 R--RNSLRIIFAIESTFVGSWLPFSALRAVFHLARLGALPLPCPLLLALRWGLTIATCLA
240 250 260 270 280 290
270 280 290 300
pF1KE9 DANCCLDAICYYYMAKEFQEASALAVAPRAKAHKSQDSLCVTLA
.: : . . : . . :. : ::
CCDS14 FVNSCANPLIYLLLDRSFR-ARALDGACGRTGRLARRISSASSLSRDDSSVFRCRAQAAN
300 310 320 330 340 350
>>CCDS53842.1 HCAR3 gene_id:8843|Hs108|chr12 (387 aa)
initn: 481 init1: 200 opt: 351 Z-score: 317.9 bits: 67.3 E(32554): 2.2e-11
Smith-Waterman score: 506; 34.4% identity (62.7% similar) in 276 aa overlap (27-283:34-301)
10 20 30 40 50
pF1KE9 MNGTYNTCGSSDLTWPPAIKLGFYAYLGVLLVLGLLLNSLALWVFCCRMQQWTETR
::. ...::: :.::::.:: ....: .:
CCDS53 HHLQDHFLEIDKKNCCVFRDDFIAKVLPPVLGLEFIFGLLGNGLALWIFCFHLKSWKSSR
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE9 IYMTNLAVADLCLLCTLPFVL-HSLRDTS----DTPLCQLSQGIYLTNRYMSISLVTAIA
:.. ::::::. :. ::::. . .: .. : : :.: .. :: :: ..:..:
CCDS53 IFLFNLAVADFLLIICLPFVMDYYVRRSDWKFGDIP-CRLVLFMFAMNRQGSIIFLTVVA
70 80 90 100 110 120
120 130 140 150 160
pF1KE9 VDRYVAVRHPLRARGLRSPRQAAAVCAVLWVLVIG---SLVARWLLGIQEG--GFCFR-S
:::: : :: .: . : :: . .:: ...: :. . :: ::.: . :. :
CCDS53 VDRYFRVVHPHHALNKISNWTAAIISCLLWGITVGLTVHLLKKKLL-IQNGTANVCISFS
130 140 150 160 170 180
170 180 190 200 210 220
pF1KE9 TRHNFN-SMAFPLLGFYLPLAVVVFCSLKVVTALAQRPPTDVGQAEATRKAARMVWANLL
:.: :. :: :.:::....::: ... .: :: .. . ..: .. . .
CCDS53 ICHTFRWHEAMFLLEFFLPLGIILFCSARIIWSLRQR---QMDRHAKIKRAITFIMVVAI
190 200 210 220 230
230 240 250 260 270
pF1KE9 VFVVCFLPLHVGLTVRLAVGW-------NACALLETIRRALYITSKLSDANCCLDAICYY
:::.:::: ...::. . : . : . ... :..:: ... : :: . ::
CCDS53 VFVICFLP---SVVVRIHIFWLLHTSGTQNCEVYRSVDLAFFITLSFTYMNSMLDPVVYY
240 250 260 270 280 290
280 290 300
pF1KE9 YMAKEFQEASALAVAPRAKAHKSQDSLCVTLA
. . :
CCDS53 FSSPSFPNFFSTLINRCLQRKITGEPDNNRSTSVELTGDPNKTRGAPEALIANSGEPWSP
300 310 320 330 340 350
>>CCDS9236.1 HCAR1 gene_id:27198|Hs108|chr12 (346 aa)
initn: 442 init1: 147 opt: 346 Z-score: 314.1 bits: 66.4 E(32554): 3.6e-11
Smith-Waterman score: 439; 32.4% identity (60.8% similar) in 296 aa overlap (27-301:22-308)
10 20 30 40 50 60
pF1KE9 MNGTYNTCGSSDLTWPPAIKLGFYAYLGVLLVLGLLLNSLALWVFCCRMQQWTETRIYMT
: : .::: : :..:: :: .:. : . .:.
CCDS92 MYNGSCCRIEGDTISQVMPPLLIVAFVLGALGNGVALCGFCFHMKTWKPSTVYLF
10 20 30 40 50
70 80 90 100 110
pF1KE9 NLAVADLCLLCTLPFVL-HSLRDT----SDTPLCQLSQGIYLTNRYMSISLVTAIAVDRY
::::::. :. ::: . :: .: : :... :: :: ..:..:.:::
CCDS92 NLAVADFLLMICLPFRTDYYLRRRHWAFGDIP-CRVGLFTLAMNRAGSIVFLTVVAADRY
60 70 80 90 100 110
120 130 140 150 160
pF1KE9 VAVRHPLRARGLRSPRQAAAVCAVLWVLVIGSLVARWL---LGIQEGGFCFRS----TRH
: :: .: . : : ::.. .::.::: . : : : .:: . .: . .
CCDS92 FKVVHPHHAVNTISTRVAAGIVCTLWALVILGTVYLLLENHLCVQETAVSCESFIMESAN
120 130 140 150 160 170
170 180 190 200 210 220
pF1KE9 NFNSMAFPLLGFYLPLAVVVFCSLKVVTALAQRPPTDVGQAEATRKAARMVWANLLVFVV
..... : : :..::....:::.:.: .: .: .... .::.:.. . .::..
CCDS92 GWHDIMFQLE-FFMPLGIILFCSFKIVWSLRRR--QQLARQARMKKATRFIMVVAIVFIT
180 190 200 210 220 230
230 240 250 260 270 280
pF1KE9 CFLPLHVGLTVRLAVGW----NACALLETIRRALYITSKLSDANCCLDAICYYYMA----
:.:: ....:: : .:: ... ::.:: ... : :: . ::. .
CCDS92 CYLP---SVSARLYFLWTVPSSACD--PSVHGALHITLSFTYMNSMLDPLVYYFSSPSFP
240 250 260 270 280
290 300
pF1KE9 KEFQEASALAVAPRAKAH-KSQDSLCVTLA
: ... . .. :. .: :.:
CCDS92 KFYNKLKICSLKPKQPGHSKTQRPEEMPISNLGRRSCISVANSFQSQSDGQWDPHIVEWH
290 300 310 320 330 340
309 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 17:56:53 2016 done: Sun Nov 6 17:56:53 2016
Total Scan time: 2.560 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]