FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE9408, 358 aa
  1>>>pF1KE9408 358 - 358 aa - 358 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7505+/-0.000829; mu= 20.3998+/- 0.050
 mean_var=166.7954+/-56.511, 0's: 0 Z-trim(108.2): 164  B-trim: 644 in 1/47
 Lambda= 0.099308
 statistics sampled from 9849 (10068) to 9849 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.671), E-opt: 0.2 (0.309), width:  16
 Scan time:  2.600

The best scores are:                                      opt bits E(32554)
CCDS34949.1 GPR20 gene_id:2843|Hs108|chr8          ( 358) 2409 357.7 8.7e-99


>>CCDS34949.1 GPR20 gene_id:2843|Hs108|chr8               (358 aa)
 initn: 2409 init1: 2409 opt: 2409  Z-score: 1887.0  bits: 357.7 E(32554): 8.7e-99
Smith-Waterman score: 2409; 99.7% identity (100.0% similar) in 358 aa overlap (1-358:1-358)

               10        20        30        40        50        60
pF1KE9 MPSVSPAGPSAGAVPNATAVTTVRTNASGLEVPLFHLFARLDEELHGTFPGLWLALMAVH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MPSVSPAGPSAGAVPNATAVTTVRTNASGLEVPLFHLFARLDEELHGTFPGLWLALMAVH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 GAIFLAGLVLNGLALYVFCCRTRAKTPSVIYTINLVVTDLLVGLSLPTRFAVYYGARGCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GAIFLAGLVLNGLALYVFCCRTRAKTPSVIYTINLVVTDLLVGLSLPTRFAVYYGARGCL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE9 RCAFPHVLGYFLNMHCSILFLTCICVDRYLAIVRPEGSRRCRQPACARAVCAFVWLAAGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 RCAFPHVLGYFLNMHCSILFLTCICVDRYLAIVRPEGSRRCRQPACARAVCAFVWLAAGA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE9 VTLSVLGVTGSRPCCRVFALTVLEFLLPLLVISVFTGRIMCALSRPGLLRQGRQRRVRAM
       :::::::::::::::::::::::::::::::::::::::::::::::::.::::::::::
CCDS34 VTLSVLGVTGSRPCCRVFALTVLEFLLPLLVISVFTGRIMCALSRPGLLHQGRQRRVRAM
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE9 QLLLTVLIIFLVCFTPFHARQVAVALWPDMPHHTSLVVYHVAVTLSSLNSCMDPIVYCFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 QLLLTVLIIFLVCFTPFHARQVAVALWPDMPHHTSLVVYHVAVTLSSLNSCMDPIVYCFV
              250       260       270       280       290       300

              310       320       330       340       350        
pF1KE9 TSGFQATVRGLFGQHGEREPSSGDVVSMHRSSKGSGRHHILSAGPHALTQALANGPEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 TSGFQATVRGLFGQHGEREPSSGDVVSMHRSSKGSGRHHILSAGPHALTQALANGPEA
              310       320       330       340       350        




358 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 11:16:33 2016 done: Sun Nov  6 11:16:34 2016
 Total Scan time:  2.600 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]