FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE9404, 347 aa
  1>>>pF1KE9404 347 - 347 aa - 347 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3165+/-0.000856; mu= 15.9006+/- 0.051
 mean_var=103.2122+/-31.483, 0's: 0 Z-trim(107.2): 159  B-trim: 1146 in 2/47
 Lambda= 0.126243
 statistics sampled from 9133 (9424) to 9133 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.652), E-opt: 0.2 (0.289), width:  16
 Scan time:  2.610

The best scores are:                                      opt bits E(32554)
CCDS2163.1 GPR148 gene_id:344561|Hs108|chr2        ( 347) 2304 430.6 9.5e-121


>>CCDS2163.1 GPR148 gene_id:344561|Hs108|chr2             (347 aa)
 initn: 2304 init1: 2304 opt: 2304  Z-score: 2281.3  bits: 430.6 E(32554): 9.5e-121
Smith-Waterman score: 2304; 99.7% identity (99.7% similar) in 347 aa overlap (1-347:1-347)

               10        20        30        40        50        60
pF1KE9 MGDELAPCPVGTTAWPALIQLISKTPCMPQAASNTSLGLGDLRVPSSMLYWLFLPSSLLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 MGDELAPCPVGTTAWPALIQLISKTPCMPQAASNTSLGLGDLRVPSSMLYWLFLPSSLLA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 AATLAVSPLLLVTILRNQRLRQEPHYLLPANILLSDLAYILLHMLISSSSLGGWELGRMA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 AATLAVSPLLLVTILRNQRLRQEPHYLLPANILLSDLAYILLHMLISSSSLGGWELGRMA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE9 CGILTDAVFAACTSTILSFTAIVLHTYLAVIHPLRYLSFMSHGAAWKAVALIWLVACCFP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 CGILTDAVFAACTSTILSFTAIVLHTYLAVIHPLRYLSFMSHGAAWKAVALIWLVACCFP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE9 TFLIWLSKWQDAQLEEQGASYILPPSMGTQPGCGLLVIVTYTSILCVLFLCTALIANCFW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 TFLIWLSKWQDAQLEEQGASYILPPSMGTQPGCGLLVIVTYTSILCVLFLCTALIANCFW
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE9 RIYAEAKTSGIWGQGYSRARGTLLIHSVLITLYVSTGVVFSLDMVLTRYHHIDSGTHTWL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 RIYAEAKTSGIWGQGYSRARGTLLIHSVLITLYVSTGVVFSLDMVLTRYHHIDSGTHTWL
              250       260       270       280       290       300

              310       320       330       340       
pF1KE9 LAANSEVLMMLPRAMLPYLYLLRYRQLLGMVRGHLPSRRHQAIFTIS
       :::::::::::::::: ::::::::::::::::::::::::::::::
CCDS21 LAANSEVLMMLPRAMLTYLYLLRYRQLLGMVRGHLPSRRHQAIFTIS
              310       320       330       340       




347 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 18:15:36 2016 done: Sun Nov  6 18:15:36 2016
 Total Scan time:  2.610 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]