Result of FASTA (omim) for
pFN21AE9395
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE9395, 612 aa
1>>>pF1KE9395 612 - 612 aa - 612 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.7708+/-0.000393; mu= 13.1312+/- 0.025
mean_var=108.3622+/-22.182, 0's: 0 Z-trim(114.2): 19 B-trim: 81 in 1/55
Lambda= 0.123207
statistics sampled from 23939 (23952) to 23939 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.649), E-opt: 0.2 (0.281), width: 16
Scan time: 11.630
The best scores are: opt bits E(85289)
NP_079089 (OMIM: 611476) putative RNA polymerase I ( 612) 3964 715.7 1.1e-205
XP_005271280 (OMIM: 611476) PREDICTED: putative RN ( 566) 3658 661.3 2.5e-189
XP_016857853 (OMIM: 611476) PREDICTED: putative RN ( 569) 3650 659.9 6.7e-189
XP_011540469 (OMIM: 611476) PREDICTED: putative RN ( 569) 3650 659.9 6.7e-189
XP_016857852 (OMIM: 611476) PREDICTED: putative RN ( 575) 3650 659.9 6.7e-189
XP_016857851 (OMIM: 611476) PREDICTED: putative RN ( 577) 3650 659.9 6.8e-189
>>NP_079089 (OMIM: 611476) putative RNA polymerase II su (612 aa)
initn: 3964 init1: 3964 opt: 3964 Z-score: 3813.5 bits: 715.7 E(85289): 1.1e-205
Smith-Waterman score: 3964; 100.0% identity (100.0% similar) in 612 aa overlap (1-612:1-612)
10 20 30 40 50 60
pF1KE9 MADFAGPSSAGRKAGAPRCSRKAAGTKQTSTLKQEDASKRKAELEAAVRKKIEFERKALH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 MADFAGPSSAGRKAGAPRCSRKAAGTKQTSTLKQEDASKRKAELEAAVRKKIEFERKALH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE9 IVEQLLEENITEEFLMECGRFITPAHYSDVVDERSIVKLCGYPLCQKKLGIVPKQKYKIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 IVEQLLEENITEEFLMECGRFITPAHYSDVVDERSIVKLCGYPLCQKKLGIVPKQKYKIS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE9 TKTNKVYDITERKSFCSNFCYQASKFFEAQIPKTPVWVREEERHPDFQLLKEEQSGHSGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 TKTNKVYDITERKSFCSNFCYQASKFFEAQIPKTPVWVREEERHPDFQLLKEEQSGHSGE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE9 EVQLCSKAIKTSDIDNPSHFEKQYESSSSSTHSDSSSDNEQDFVSSILPGNRPNSTNIRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 EVQLCSKAIKTSDIDNPSHFEKQYESSSSSTHSDSSSDNEQDFVSSILPGNRPNSTNIRP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE9 QLHQKSIMKKKAGHKANSKHKDKEQTVVDVTEQLGDCKLDSQEKDATCELPLQKVNTQSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 QLHQKSIMKKKAGHKANSKHKDKEQTVVDVTEQLGDCKLDSQEKDATCELPLQKVNTQSS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE9 SNSTLPERLKASENSESEYSRSEITLVGISKKSAEHFKRKFAKSNQVSRSVSSSVQVCPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 SNSTLPERLKASENSESEYSRSEITLVGISKKSAEHFKRKFAKSNQVSRSVSSSVQVCPE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE9 VGKRNLLKVLKETLIEWKTEETLRFLYGQNYASVCLKPEASLVKEELDEDDIISDPDSHF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 VGKRNLLKVLKETLIEWKTEETLRFLYGQNYASVCLKPEASLVKEELDEDDIISDPDSHF
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE9 PAWRESQNSLDESLPFRGSGTAIKPLPSYENLKKETEKLNLRIREFYRGRYVLGEETTKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 PAWRESQNSLDESLPFRGSGTAIKPLPSYENLKKETEKLNLRIREFYRGRYVLGEETTKS
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE9 QDSEEHDSTFPLIDSSSQNQIRKRIVLEKLSKVLPGLLVPLQITLGDIYTQLKNLVRTFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 QDSEEHDSTFPLIDSSSQNQIRKRIVLEKLSKVLPGLLVPLQITLGDIYTQLKNLVRTFR
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE9 LTNRNIIHKPAEWTLIAMVLLSLLTPILGIQKHSQEGMVFTRFLDTLLEELHLKNEDLES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 LTNRNIIHKPAEWTLIAMVLLSLLTPILGIQKHSQEGMVFTRFLDTLLEELHLKNEDLES
550 560 570 580 590 600
610
pF1KE9 LTIIFRTSCLPE
::::::::::::
NP_079 LTIIFRTSCLPE
610
>>XP_005271280 (OMIM: 611476) PREDICTED: putative RNA po (566 aa)
initn: 3658 init1: 3658 opt: 3658 Z-score: 3520.1 bits: 661.3 E(85289): 2.5e-189
Smith-Waterman score: 3658; 99.6% identity (99.6% similar) in 566 aa overlap (1-566:1-566)
10 20 30 40 50 60
pF1KE9 MADFAGPSSAGRKAGAPRCSRKAAGTKQTSTLKQEDASKRKAELEAAVRKKIEFERKALH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MADFAGPSSAGRKAGAPRCSRKAAGTKQTSTLKQEDASKRKAELEAAVRKKIEFERKALH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE9 IVEQLLEENITEEFLMECGRFITPAHYSDVVDERSIVKLCGYPLCQKKLGIVPKQKYKIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IVEQLLEENITEEFLMECGRFITPAHYSDVVDERSIVKLCGYPLCQKKLGIVPKQKYKIS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE9 TKTNKVYDITERKSFCSNFCYQASKFFEAQIPKTPVWVREEERHPDFQLLKEEQSGHSGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TKTNKVYDITERKSFCSNFCYQASKFFEAQIPKTPVWVREEERHPDFQLLKEEQSGHSGE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE9 EVQLCSKAIKTSDIDNPSHFEKQYESSSSSTHSDSSSDNEQDFVSSILPGNRPNSTNIRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EVQLCSKAIKTSDIDNPSHFEKQYESSSSSTHSDSSSDNEQDFVSSILPGNRPNSTNIRP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE9 QLHQKSIMKKKAGHKANSKHKDKEQTVVDVTEQLGDCKLDSQEKDATCELPLQKVNTQSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QLHQKSIMKKKAGHKANSKHKDKEQTVVDVTEQLGDCKLDSQEKDATCELPLQKVNTQSS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE9 SNSTLPERLKASENSESEYSRSEITLVGISKKSAEHFKRKFAKSNQVSRSVSSSVQVCPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SNSTLPERLKASENSESEYSRSEITLVGISKKSAEHFKRKFAKSNQVSRSVSSSVQVCPE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE9 VGKRNLLKVLKETLIEWKTEETLRFLYGQNYASVCLKPEASLVKEELDEDDIISDPDSHF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VGKRNLLKVLKETLIEWKTEETLRFLYGQNYASVCLKPEASLVKEELDEDDIISDPDSHF
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE9 PAWRESQNSLDESLPFRGSGTAIKPLPSYENLKKETEKLNLRIREFYRGRYVLGEETTKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PAWRESQNSLDESLPFRGSGTAIKPLPSYENLKKETEKLNLRIREFYRGRYVLGEETTKS
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE9 QDSEEHDSTFPLIDSSSQNQIRKRIVLEKLSKVLPGLLVPLQITLGDIYTQLKNLVRTFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QDSEEHDSTFPLIDSSSQNQIRKRIVLEKLSKVLPGLLVPLQITLGDIYTQLKNLVRTFR
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE9 LTNRNIIHKPAEWTLIAMVLLSLLTPILGIQKHSQEGMVFTRFLDTLLEELHLKNEDLES
::::::::::::::::::::::: :
XP_005 LTNRNIIHKPAEWTLIAMVLLSLYIP
550 560
>>XP_016857853 (OMIM: 611476) PREDICTED: putative RNA po (569 aa)
initn: 3650 init1: 3650 opt: 3650 Z-score: 3512.4 bits: 659.9 E(85289): 6.7e-189
Smith-Waterman score: 3650; 100.0% identity (100.0% similar) in 563 aa overlap (1-563:1-563)
10 20 30 40 50 60
pF1KE9 MADFAGPSSAGRKAGAPRCSRKAAGTKQTSTLKQEDASKRKAELEAAVRKKIEFERKALH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MADFAGPSSAGRKAGAPRCSRKAAGTKQTSTLKQEDASKRKAELEAAVRKKIEFERKALH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE9 IVEQLLEENITEEFLMECGRFITPAHYSDVVDERSIVKLCGYPLCQKKLGIVPKQKYKIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IVEQLLEENITEEFLMECGRFITPAHYSDVVDERSIVKLCGYPLCQKKLGIVPKQKYKIS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE9 TKTNKVYDITERKSFCSNFCYQASKFFEAQIPKTPVWVREEERHPDFQLLKEEQSGHSGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TKTNKVYDITERKSFCSNFCYQASKFFEAQIPKTPVWVREEERHPDFQLLKEEQSGHSGE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE9 EVQLCSKAIKTSDIDNPSHFEKQYESSSSSTHSDSSSDNEQDFVSSILPGNRPNSTNIRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EVQLCSKAIKTSDIDNPSHFEKQYESSSSSTHSDSSSDNEQDFVSSILPGNRPNSTNIRP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE9 QLHQKSIMKKKAGHKANSKHKDKEQTVVDVTEQLGDCKLDSQEKDATCELPLQKVNTQSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QLHQKSIMKKKAGHKANSKHKDKEQTVVDVTEQLGDCKLDSQEKDATCELPLQKVNTQSS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE9 SNSTLPERLKASENSESEYSRSEITLVGISKKSAEHFKRKFAKSNQVSRSVSSSVQVCPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SNSTLPERLKASENSESEYSRSEITLVGISKKSAEHFKRKFAKSNQVSRSVSSSVQVCPE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE9 VGKRNLLKVLKETLIEWKTEETLRFLYGQNYASVCLKPEASLVKEELDEDDIISDPDSHF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VGKRNLLKVLKETLIEWKTEETLRFLYGQNYASVCLKPEASLVKEELDEDDIISDPDSHF
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE9 PAWRESQNSLDESLPFRGSGTAIKPLPSYENLKKETEKLNLRIREFYRGRYVLGEETTKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PAWRESQNSLDESLPFRGSGTAIKPLPSYENLKKETEKLNLRIREFYRGRYVLGEETTKS
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE9 QDSEEHDSTFPLIDSSSQNQIRKRIVLEKLSKVLPGLLVPLQITLGDIYTQLKNLVRTFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QDSEEHDSTFPLIDSSSQNQIRKRIVLEKLSKVLPGLLVPLQITLGDIYTQLKNLVRTFR
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE9 LTNRNIIHKPAEWTLIAMVLLSLLTPILGIQKHSQEGMVFTRFLDTLLEELHLKNEDLES
:::::::::::::::::::::::
XP_016 LTNRNIIHKPAEWTLIAMVLLSLCSGSCL
550 560
>>XP_011540469 (OMIM: 611476) PREDICTED: putative RNA po (569 aa)
initn: 3650 init1: 3650 opt: 3650 Z-score: 3512.4 bits: 659.9 E(85289): 6.7e-189
Smith-Waterman score: 3650; 100.0% identity (100.0% similar) in 563 aa overlap (1-563:1-563)
10 20 30 40 50 60
pF1KE9 MADFAGPSSAGRKAGAPRCSRKAAGTKQTSTLKQEDASKRKAELEAAVRKKIEFERKALH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MADFAGPSSAGRKAGAPRCSRKAAGTKQTSTLKQEDASKRKAELEAAVRKKIEFERKALH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE9 IVEQLLEENITEEFLMECGRFITPAHYSDVVDERSIVKLCGYPLCQKKLGIVPKQKYKIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IVEQLLEENITEEFLMECGRFITPAHYSDVVDERSIVKLCGYPLCQKKLGIVPKQKYKIS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE9 TKTNKVYDITERKSFCSNFCYQASKFFEAQIPKTPVWVREEERHPDFQLLKEEQSGHSGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TKTNKVYDITERKSFCSNFCYQASKFFEAQIPKTPVWVREEERHPDFQLLKEEQSGHSGE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE9 EVQLCSKAIKTSDIDNPSHFEKQYESSSSSTHSDSSSDNEQDFVSSILPGNRPNSTNIRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EVQLCSKAIKTSDIDNPSHFEKQYESSSSSTHSDSSSDNEQDFVSSILPGNRPNSTNIRP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE9 QLHQKSIMKKKAGHKANSKHKDKEQTVVDVTEQLGDCKLDSQEKDATCELPLQKVNTQSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QLHQKSIMKKKAGHKANSKHKDKEQTVVDVTEQLGDCKLDSQEKDATCELPLQKVNTQSS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE9 SNSTLPERLKASENSESEYSRSEITLVGISKKSAEHFKRKFAKSNQVSRSVSSSVQVCPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SNSTLPERLKASENSESEYSRSEITLVGISKKSAEHFKRKFAKSNQVSRSVSSSVQVCPE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE9 VGKRNLLKVLKETLIEWKTEETLRFLYGQNYASVCLKPEASLVKEELDEDDIISDPDSHF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VGKRNLLKVLKETLIEWKTEETLRFLYGQNYASVCLKPEASLVKEELDEDDIISDPDSHF
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE9 PAWRESQNSLDESLPFRGSGTAIKPLPSYENLKKETEKLNLRIREFYRGRYVLGEETTKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PAWRESQNSLDESLPFRGSGTAIKPLPSYENLKKETEKLNLRIREFYRGRYVLGEETTKS
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE9 QDSEEHDSTFPLIDSSSQNQIRKRIVLEKLSKVLPGLLVPLQITLGDIYTQLKNLVRTFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QDSEEHDSTFPLIDSSSQNQIRKRIVLEKLSKVLPGLLVPLQITLGDIYTQLKNLVRTFR
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE9 LTNRNIIHKPAEWTLIAMVLLSLLTPILGIQKHSQEGMVFTRFLDTLLEELHLKNEDLES
:::::::::::::::::::::::
XP_011 LTNRNIIHKPAEWTLIAMVLLSLCSGSCL
550 560
>>XP_016857852 (OMIM: 611476) PREDICTED: putative RNA po (575 aa)
initn: 3650 init1: 3650 opt: 3650 Z-score: 3512.3 bits: 659.9 E(85289): 6.7e-189
Smith-Waterman score: 3650; 100.0% identity (100.0% similar) in 563 aa overlap (1-563:1-563)
10 20 30 40 50 60
pF1KE9 MADFAGPSSAGRKAGAPRCSRKAAGTKQTSTLKQEDASKRKAELEAAVRKKIEFERKALH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MADFAGPSSAGRKAGAPRCSRKAAGTKQTSTLKQEDASKRKAELEAAVRKKIEFERKALH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE9 IVEQLLEENITEEFLMECGRFITPAHYSDVVDERSIVKLCGYPLCQKKLGIVPKQKYKIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IVEQLLEENITEEFLMECGRFITPAHYSDVVDERSIVKLCGYPLCQKKLGIVPKQKYKIS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE9 TKTNKVYDITERKSFCSNFCYQASKFFEAQIPKTPVWVREEERHPDFQLLKEEQSGHSGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TKTNKVYDITERKSFCSNFCYQASKFFEAQIPKTPVWVREEERHPDFQLLKEEQSGHSGE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE9 EVQLCSKAIKTSDIDNPSHFEKQYESSSSSTHSDSSSDNEQDFVSSILPGNRPNSTNIRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EVQLCSKAIKTSDIDNPSHFEKQYESSSSSTHSDSSSDNEQDFVSSILPGNRPNSTNIRP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE9 QLHQKSIMKKKAGHKANSKHKDKEQTVVDVTEQLGDCKLDSQEKDATCELPLQKVNTQSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QLHQKSIMKKKAGHKANSKHKDKEQTVVDVTEQLGDCKLDSQEKDATCELPLQKVNTQSS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE9 SNSTLPERLKASENSESEYSRSEITLVGISKKSAEHFKRKFAKSNQVSRSVSSSVQVCPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SNSTLPERLKASENSESEYSRSEITLVGISKKSAEHFKRKFAKSNQVSRSVSSSVQVCPE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE9 VGKRNLLKVLKETLIEWKTEETLRFLYGQNYASVCLKPEASLVKEELDEDDIISDPDSHF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VGKRNLLKVLKETLIEWKTEETLRFLYGQNYASVCLKPEASLVKEELDEDDIISDPDSHF
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE9 PAWRESQNSLDESLPFRGSGTAIKPLPSYENLKKETEKLNLRIREFYRGRYVLGEETTKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PAWRESQNSLDESLPFRGSGTAIKPLPSYENLKKETEKLNLRIREFYRGRYVLGEETTKS
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE9 QDSEEHDSTFPLIDSSSQNQIRKRIVLEKLSKVLPGLLVPLQITLGDIYTQLKNLVRTFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QDSEEHDSTFPLIDSSSQNQIRKRIVLEKLSKVLPGLLVPLQITLGDIYTQLKNLVRTFR
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE9 LTNRNIIHKPAEWTLIAMVLLSLLTPILGIQKHSQEGMVFTRFLDTLLEELHLKNEDLES
:::::::::::::::::::::::
XP_016 LTNRNIIHKPAEWTLIAMVLLSLHSLCCPGLSAVT
550 560 570
>>XP_016857851 (OMIM: 611476) PREDICTED: putative RNA po (577 aa)
initn: 3650 init1: 3650 opt: 3650 Z-score: 3512.3 bits: 659.9 E(85289): 6.8e-189
Smith-Waterman score: 3650; 100.0% identity (100.0% similar) in 563 aa overlap (1-563:1-563)
10 20 30 40 50 60
pF1KE9 MADFAGPSSAGRKAGAPRCSRKAAGTKQTSTLKQEDASKRKAELEAAVRKKIEFERKALH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MADFAGPSSAGRKAGAPRCSRKAAGTKQTSTLKQEDASKRKAELEAAVRKKIEFERKALH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE9 IVEQLLEENITEEFLMECGRFITPAHYSDVVDERSIVKLCGYPLCQKKLGIVPKQKYKIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IVEQLLEENITEEFLMECGRFITPAHYSDVVDERSIVKLCGYPLCQKKLGIVPKQKYKIS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE9 TKTNKVYDITERKSFCSNFCYQASKFFEAQIPKTPVWVREEERHPDFQLLKEEQSGHSGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TKTNKVYDITERKSFCSNFCYQASKFFEAQIPKTPVWVREEERHPDFQLLKEEQSGHSGE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE9 EVQLCSKAIKTSDIDNPSHFEKQYESSSSSTHSDSSSDNEQDFVSSILPGNRPNSTNIRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EVQLCSKAIKTSDIDNPSHFEKQYESSSSSTHSDSSSDNEQDFVSSILPGNRPNSTNIRP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE9 QLHQKSIMKKKAGHKANSKHKDKEQTVVDVTEQLGDCKLDSQEKDATCELPLQKVNTQSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QLHQKSIMKKKAGHKANSKHKDKEQTVVDVTEQLGDCKLDSQEKDATCELPLQKVNTQSS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE9 SNSTLPERLKASENSESEYSRSEITLVGISKKSAEHFKRKFAKSNQVSRSVSSSVQVCPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SNSTLPERLKASENSESEYSRSEITLVGISKKSAEHFKRKFAKSNQVSRSVSSSVQVCPE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE9 VGKRNLLKVLKETLIEWKTEETLRFLYGQNYASVCLKPEASLVKEELDEDDIISDPDSHF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VGKRNLLKVLKETLIEWKTEETLRFLYGQNYASVCLKPEASLVKEELDEDDIISDPDSHF
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE9 PAWRESQNSLDESLPFRGSGTAIKPLPSYENLKKETEKLNLRIREFYRGRYVLGEETTKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PAWRESQNSLDESLPFRGSGTAIKPLPSYENLKKETEKLNLRIREFYRGRYVLGEETTKS
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE9 QDSEEHDSTFPLIDSSSQNQIRKRIVLEKLSKVLPGLLVPLQITLGDIYTQLKNLVRTFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QDSEEHDSTFPLIDSSSQNQIRKRIVLEKLSKVLPGLLVPLQITLGDIYTQLKNLVRTFR
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE9 LTNRNIIHKPAEWTLIAMVLLSLLTPILGIQKHSQEGMVFTRFLDTLLEELHLKNEDLES
:::::::::::::::::::::::
XP_016 LTNRNIIHKPAEWTLIAMVLLSLHRISPCCLGCGAVA
550 560 570
612 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 02:38:47 2016 done: Tue Nov 8 02:38:49 2016
Total Scan time: 11.630 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]