Result of FASTA (ccds) for
pFN21AE9286
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE9286, 268 aa
1>>>pF1KE9286 268 - 268 aa - 268 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.9794+/-0.000834; mu= 12.1466+/- 0.050
mean_var=80.0160+/-15.848, 0's: 0 Z-trim(108.4): 13 B-trim: 122 in 1/49
Lambda= 0.143379
statistics sampled from 10202 (10210) to 10202 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.69), E-opt: 0.2 (0.314), width: 16
Scan time: 1.570
The best scores are: opt bits E(32554)
CCDS3182.1 MLF1 gene_id:4291|Hs108|chr3 ( 268) 1804 382.4 1.8e-106
CCDS46945.1 MLF1 gene_id:4291|Hs108|chr3 ( 243) 1636 347.6 4.9e-96
CCDS56287.1 MLF1 gene_id:4291|Hs108|chr3 ( 258) 1362 290.9 5.9e-79
CCDS56286.1 MLF1 gene_id:4291|Hs108|chr3 ( 299) 1362 291.0 6.7e-79
CCDS56288.1 MLF1 gene_id:4291|Hs108|chr3 ( 200) 881 191.4 4.3e-49
CCDS8559.1 MLF2 gene_id:8079|Hs108|chr12 ( 248) 544 121.7 4.9e-28
>>CCDS3182.1 MLF1 gene_id:4291|Hs108|chr3 (268 aa)
initn: 1804 init1: 1804 opt: 1804 Z-score: 2024.8 bits: 382.4 E(32554): 1.8e-106
Smith-Waterman score: 1804; 100.0% identity (100.0% similar) in 268 aa overlap (1-268:1-268)
10 20 30 40 50 60
pF1KE9 MFRMLNSSFEDDPFFSESILAHRENMRQMIRSFSEPFGRDLLSISDGRGRAHNRRGHNDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MFRMLNSSFEDDPFFSESILAHRENMRQMIRSFSEPFGRDLLSISDGRGRAHNRRGHNDG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE9 EDSLTHTDVSSFQTMDQMVSNMRNYMQKLERNFGQLSVDPNGHSFCSSSVMTYSKIGDEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 EDSLTHTDVSSFQTMDQMVSNMRNYMQKLERNFGQLSVDPNGHSFCSSSVMTYSKIGDEP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE9 PKVFQASTQTRRAPGGIKETRKAMRDSDSGLEKMAIGHHIHDRAHVIKKSKNKKTGDEEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PKVFQASTQTRRAPGGIKETRKAMRDSDSGLEKMAIGHHIHDRAHVIKKSKNKKTGDEEV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE9 NQEFINMNESDAHAFDEEWQSEVLKYKPGRHNLGNTRMRSVGHENPGSRELKRREKPQQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 NQEFINMNESDAHAFDEEWQSEVLKYKPGRHNLGNTRMRSVGHENPGSRELKRREKPQQS
190 200 210 220 230 240
250 260
pF1KE9 PAIEHGRRSNVLGDKLHIKGSSVKSNKK
::::::::::::::::::::::::::::
CCDS31 PAIEHGRRSNVLGDKLHIKGSSVKSNKK
250 260
>>CCDS46945.1 MLF1 gene_id:4291|Hs108|chr3 (243 aa)
initn: 1636 init1: 1636 opt: 1636 Z-score: 1837.7 bits: 347.6 E(32554): 4.9e-96
Smith-Waterman score: 1636; 100.0% identity (100.0% similar) in 243 aa overlap (26-268:1-243)
10 20 30 40 50 60
pF1KE9 MFRMLNSSFEDDPFFSESILAHRENMRQMIRSFSEPFGRDLLSISDGRGRAHNRRGHNDG
:::::::::::::::::::::::::::::::::::
CCDS46 MRQMIRSFSEPFGRDLLSISDGRGRAHNRRGHNDG
10 20 30
70 80 90 100 110 120
pF1KE9 EDSLTHTDVSSFQTMDQMVSNMRNYMQKLERNFGQLSVDPNGHSFCSSSVMTYSKIGDEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 EDSLTHTDVSSFQTMDQMVSNMRNYMQKLERNFGQLSVDPNGHSFCSSSVMTYSKIGDEP
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE9 PKVFQASTQTRRAPGGIKETRKAMRDSDSGLEKMAIGHHIHDRAHVIKKSKNKKTGDEEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 PKVFQASTQTRRAPGGIKETRKAMRDSDSGLEKMAIGHHIHDRAHVIKKSKNKKTGDEEV
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE9 NQEFINMNESDAHAFDEEWQSEVLKYKPGRHNLGNTRMRSVGHENPGSRELKRREKPQQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 NQEFINMNESDAHAFDEEWQSEVLKYKPGRHNLGNTRMRSVGHENPGSRELKRREKPQQS
160 170 180 190 200 210
250 260
pF1KE9 PAIEHGRRSNVLGDKLHIKGSSVKSNKK
::::::::::::::::::::::::::::
CCDS46 PAIEHGRRSNVLGDKLHIKGSSVKSNKK
220 230 240
>>CCDS56287.1 MLF1 gene_id:4291|Hs108|chr3 (258 aa)
initn: 1629 init1: 1362 opt: 1362 Z-score: 1531.0 bits: 290.9 E(32554): 5.9e-79
Smith-Waterman score: 1596; 94.2% identity (94.2% similar) in 258 aa overlap (26-268:1-258)
10 20 30 40 50 60
pF1KE9 MFRMLNSSFEDDPFFSESILAHRENMRQMIRSFSEPFGRDLLSISDGRGRAHNRRGHNDG
:::::::::::::::::::::::::::::::::::
CCDS56 MRQMIRSFSEPFGRDLLSISDGRGRAHNRRGHNDG
10 20 30
70 80 90 100
pF1KE9 EDSLT---------------HTDVSSFQTMDQMVSNMRNYMQKLERNFGQLSVDPNGHSF
::::: ::::::::::::::::::::::::::::::::::::::::
CCDS56 EDSLTATSCSLVPFGDFGGMHTDVSSFQTMDQMVSNMRNYMQKLERNFGQLSVDPNGHSF
40 50 60 70 80 90
110 120 130 140 150 160
pF1KE9 CSSSVMTYSKIGDEPPKVFQASTQTRRAPGGIKETRKAMRDSDSGLEKMAIGHHIHDRAH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 CSSSVMTYSKIGDEPPKVFQASTQTRRAPGGIKETRKAMRDSDSGLEKMAIGHHIHDRAH
100 110 120 130 140 150
170 180 190 200 210 220
pF1KE9 VIKKSKNKKTGDEEVNQEFINMNESDAHAFDEEWQSEVLKYKPGRHNLGNTRMRSVGHEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 VIKKSKNKKTGDEEVNQEFINMNESDAHAFDEEWQSEVLKYKPGRHNLGNTRMRSVGHEN
160 170 180 190 200 210
230 240 250 260
pF1KE9 PGSRELKRREKPQQSPAIEHGRRSNVLGDKLHIKGSSVKSNKK
:::::::::::::::::::::::::::::::::::::::::::
CCDS56 PGSRELKRREKPQQSPAIEHGRRSNVLGDKLHIKGSSVKSNKK
220 230 240 250
>>CCDS56286.1 MLF1 gene_id:4291|Hs108|chr3 (299 aa)
initn: 1690 init1: 1362 opt: 1362 Z-score: 1530.0 bits: 291.0 E(32554): 6.7e-79
Smith-Waterman score: 1658; 94.1% identity (94.4% similar) in 269 aa overlap (15-268:31-299)
10 20 30 40
pF1KE9 MFRMLNSSFEDDPFFSESILAHRENMRQMIRSFSEPFGRDLLSI
.:::::::::::::::::::::::::::::
CCDS56 MLKEVLQREGKSYKSETLMYIKKARASENKLSESILAHRENMRQMIRSFSEPFGRDLLSI
10 20 30 40 50 60
50 60 70 80
pF1KE9 SDGRGRAHNRRGHNDGEDSLT---------------HTDVSSFQTMDQMVSNMRNYMQKL
::::::::::::::::::::: ::::::::::::::::::::::::
CCDS56 SDGRGRAHNRRGHNDGEDSLTATSCSLVPFGDFGGMHTDVSSFQTMDQMVSNMRNYMQKL
70 80 90 100 110 120
90 100 110 120 130 140
pF1KE9 ERNFGQLSVDPNGHSFCSSSVMTYSKIGDEPPKVFQASTQTRRAPGGIKETRKAMRDSDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 ERNFGQLSVDPNGHSFCSSSVMTYSKIGDEPPKVFQASTQTRRAPGGIKETRKAMRDSDS
130 140 150 160 170 180
150 160 170 180 190 200
pF1KE9 GLEKMAIGHHIHDRAHVIKKSKNKKTGDEEVNQEFINMNESDAHAFDEEWQSEVLKYKPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 GLEKMAIGHHIHDRAHVIKKSKNKKTGDEEVNQEFINMNESDAHAFDEEWQSEVLKYKPG
190 200 210 220 230 240
210 220 230 240 250 260
pF1KE9 RHNLGNTRMRSVGHENPGSRELKRREKPQQSPAIEHGRRSNVLGDKLHIKGSSVKSNKK
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 RHNLGNTRMRSVGHENPGSRELKRREKPQQSPAIEHGRRSNVLGDKLHIKGSSVKSNKK
250 260 270 280 290
>>CCDS56288.1 MLF1 gene_id:4291|Hs108|chr3 (200 aa)
initn: 1327 init1: 881 opt: 881 Z-score: 994.9 bits: 191.4 E(32554): 4.3e-49
Smith-Waterman score: 1245; 82.3% identity (82.3% similar) in 243 aa overlap (26-268:1-200)
10 20 30 40 50 60
pF1KE9 MFRMLNSSFEDDPFFSESILAHRENMRQMIRSFSEPFGRDLLSISDGRGRAHNRRGHNDG
:::::::::::::::::::::::::::::::::::
CCDS56 MRQMIRSFSEPFGRDLLSISDGRGRAHNRRGHNDG
10 20 30
70 80 90 100 110 120
pF1KE9 EDSLTHTDVSSFQTMDQMVSNMRNYMQKLERNFGQLSVDPNGHSFCSSSVMTYSKIGDEP
:::::::::::::::::::::::::::::::::
CCDS56 EDSLTHTDVSSFQTMDQMVSNMRNYMQKLERNF---------------------------
40 50 60
130 140 150 160 170 180
pF1KE9 PKVFQASTQTRRAPGGIKETRKAMRDSDSGLEKMAIGHHIHDRAHVIKKSKNKKTGDEEV
::::::::::::::::::::::::::::::::::::::::::::
CCDS56 ----------------IKETRKAMRDSDSGLEKMAIGHHIHDRAHVIKKSKNKKTGDEEV
70 80 90 100 110
190 200 210 220 230 240
pF1KE9 NQEFINMNESDAHAFDEEWQSEVLKYKPGRHNLGNTRMRSVGHENPGSRELKRREKPQQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 NQEFINMNESDAHAFDEEWQSEVLKYKPGRHNLGNTRMRSVGHENPGSRELKRREKPQQS
120 130 140 150 160 170
250 260
pF1KE9 PAIEHGRRSNVLGDKLHIKGSSVKSNKK
::::::::::::::::::::::::::::
CCDS56 PAIEHGRRSNVLGDKLHIKGSSVKSNKK
180 190 200
>>CCDS8559.1 MLF2 gene_id:8079|Hs108|chr12 (248 aa)
initn: 549 init1: 460 opt: 544 Z-score: 616.8 bits: 121.7 E(32554): 4.9e-28
Smith-Waterman score: 544; 39.1% identity (68.6% similar) in 258 aa overlap (1-248:1-245)
10 20 30 40 50
pF1KE9 MFRMLNSSFEDDPFFSESILA-HRENMRQMIRSFSEPFGRD-LLSISDGR--G-RAHNRR
:::.. . .::.: . .: ::..: .:. : :: . .:::.:: : : .::
CCDS85 MFRFMRDVEPEDPMFLMDPFAIHRQHMSRML---SGGFGYSPFLSITDGNMPGTRPASRR
10 20 30 40 50
60 70 80 90 100 110
pF1KE9 GHNDGEDSLTHTDVSSFQT--MDQMVSNMRNYMQKLERNFGQLSVDPNGHSFCSSSVMTY
.. : :: : :. .: ..:. . :. .... : ..: ::.:..:
CCDS85 MQQAGA-------VSPFGMLGMSGGFMDMFGMMNDMIGNMEHMTAGGNCQTFSSSTVISY
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE9 SKIGDEPPKVFQASTQTRRAPGGIKETRKAMRDSDSGLEKMAIGHHIHDRAHVIKKSKNK
:. :: :::.: ... : :::::.:::...::::::::.:.:::::.::::....:.:.
CCDS85 SNTGDGAPKVYQETSEMRSAPGGIRETRRTVRDSDSGLEQMSIGHHIRDRAHILQRSRNH
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE9 KTGDEEVNQEFINMNESDAHAFDEEWQSEVLKYKPGRHNLGNTRMRSVG---HENPGSRE
.:::.: :..::..::.: :::.::. :. ... : : :..: : .. : .
CCDS85 RTGDQEERQDYINLDESEAAAFDDEWRRETSRFRQQRP-LEFRRLESSGAGGRRAEGPPR
180 190 200 210 220
240 250 260
pF1KE9 LKRREKPQQSPAIEHGRRSNVLGDKLHIKGSSVKSNKK
: . :..::. ...::
CCDS85 LAI-QGPEDSPS-RQSRRYDW
230 240
268 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 10:20:52 2016 done: Tue Nov 8 10:20:53 2016
Total Scan time: 1.570 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]