FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE9285, 246 aa
  1>>>pF1KE9285 246 - 246 aa - 246 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.1070+/-0.000803; mu= 2.6545+/- 0.048
 mean_var=166.2171+/-32.959, 0's: 0 Z-trim(113.8): 13  B-trim: 15 in 1/53
 Lambda= 0.099480
 statistics sampled from 14375 (14379) to 14375 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.776), E-opt: 0.2 (0.442), width:  16
 Scan time:  1.850

The best scores are:                                      opt bits E(32554)
CCDS8135.1 BRMS1 gene_id:25855|Hs108|chr11         ( 246) 1618 243.3 1.1e-64
CCDS44654.1 BRMS1 gene_id:25855|Hs108|chr11        ( 290) 1600 240.8 7.6e-64
CCDS32066.1 BRMS1L gene_id:84312|Hs108|chr14       ( 323)  858 134.3 9.5e-32


>>CCDS8135.1 BRMS1 gene_id:25855|Hs108|chr11              (246 aa)
 initn: 1618 init1: 1618 opt: 1618  Z-score: 1274.7  bits: 243.3 E(32554): 1.1e-64
Smith-Waterman score: 1618; 100.0% identity (100.0% similar) in 246 aa overlap (1-246:1-246)

               10        20        30        40        50        60
pF1KE9 MPVQPPSKDTEEMEAEGDSAAEMNGEEEESEEERSGSQTESEEESSEMDDEDYERRRSEC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MPVQPPSKDTEEMEAEGDSAAEMNGEEEESEEERSGSQTESEEESSEMDDEDYERRRSEC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 VSEMLDLEKQFSELKEKLFRERLSQLRLRLEEVGAERAPEYTEPLGGLQRSLKIRIQVAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 VSEMLDLEKQFSELKEKLFRERLSQLRLRLEEVGAERAPEYTEPLGGLQRSLKIRIQVAG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE9 IYKGFCLDVIRNKYECELQGAKQHLESEKLLLYDTLQGELQERIQRLEEDRQSLDLSSEW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 IYKGFCLDVIRNKYECELQGAKQHLESEKLLLYDTLQGELQERIQRLEEDRQSLDLSSEW
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE9 WDDKLHARGSSRSWDSLPPSKRKKAPLVSGPYIVYMLQEIDILEDWTAIKKARAAVSPQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 WDDKLHARGSSRSWDSLPPSKRKKAPLVSGPYIVYMLQEIDILEDWTAIKKARAAVSPQK
              190       200       210       220       230       240

             
pF1KE9 RKSDGP
       ::::::
CCDS81 RKSDGP
             

>>CCDS44654.1 BRMS1 gene_id:25855|Hs108|chr11             (290 aa)
 initn: 1600 init1: 1600 opt: 1600  Z-score: 1259.7  bits: 240.8 E(32554): 7.6e-64
Smith-Waterman score: 1600; 100.0% identity (100.0% similar) in 244 aa overlap (1-244:1-244)

               10        20        30        40        50        60
pF1KE9 MPVQPPSKDTEEMEAEGDSAAEMNGEEEESEEERSGSQTESEEESSEMDDEDYERRRSEC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MPVQPPSKDTEEMEAEGDSAAEMNGEEEESEEERSGSQTESEEESSEMDDEDYERRRSEC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 VSEMLDLEKQFSELKEKLFRERLSQLRLRLEEVGAERAPEYTEPLGGLQRSLKIRIQVAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 VSEMLDLEKQFSELKEKLFRERLSQLRLRLEEVGAERAPEYTEPLGGLQRSLKIRIQVAG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE9 IYKGFCLDVIRNKYECELQGAKQHLESEKLLLYDTLQGELQERIQRLEEDRQSLDLSSEW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 IYKGFCLDVIRNKYECELQGAKQHLESEKLLLYDTLQGELQERIQRLEEDRQSLDLSSEW
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE9 WDDKLHARGSSRSWDSLPPSKRKKAPLVSGPYIVYMLQEIDILEDWTAIKKARAAVSPQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 WDDKLHARGSSRSWDSLPPSKRKKAPLVSGPYIVYMLQEIDILEDWTAIKKARAAVSPQK
              190       200       210       220       230       240

                                                         
pF1KE9 RKSDGP                                            
       ::::                                              
CCDS44 RKSDDRRTHRPLRVCPARLLWCCWALPLHLALAWTPPLPSSRPAQLWPWS
              250       260       270       280       290

>>CCDS32066.1 BRMS1L gene_id:84312|Hs108|chr14            (323 aa)
 initn: 894 init1: 631 opt: 858  Z-score: 683.5  bits: 134.3 E(32554): 9.5e-32
Smith-Waterman score: 858; 53.2% identity (82.3% similar) in 248 aa overlap (1-246:1-244)

                 10        20        30        40        50        
pF1KE9 MPVQP--PSKDTEEMEAEGDSAAEMNGEEEESEEERSGSQTESEEESSEMDDEDYERRRS
       :::.    .:.:.. .    . :: .:   :.:. .:.: .: . .:::::::: :::: 
CCDS32 MPVHSRGDKKETNHHDEMEVDYAENEGSSSEDEDTESSSVSE-DGDSSEMDDEDCERRRM
               10        20        30        40         50         

       60        70        80        90       100       110        
pF1KE9 ECVSEMLDLEKQFSELKEKLFRERLSQLRLRLEEVGAERAPEYTEPLGGLQRSLKIRIQV
       ::..:: .:::::..::..:..:::::.  .:.:: : .:::: :::. ::....:: .:
CCDS32 ECLDEMSNLEKQFTDLKDQLYKERLSQVDAKLQEVIAGKAPEYLEPLATLQENMQIRTKV
      60        70        80        90       100       110         

      120       130       140       150       160       170        
pF1KE9 AGIYKGFCLDVIRNKYECELQGAKQHLESEKLLLYDTLQGELQERIQRLEEDRQSLDLSS
       ::::. .::. ..::::::.:...:: ::::::::::.:.::.:.:.::::::.:.:..:
CCDS32 AGIYRELCLESVKNKYECEIQASRQHCESEKLLLYDTVQSELEEKIRRLEEDRHSIDITS
     120       130       140       150       160       170         

      180       190       200       210       220       230        
pF1KE9 EWWDDKLHARGSSRSWDSLPPSKRKKAPLVSGPYIVYMLQEIDILEDWTAIKKARAAVSP
       : :.:.:..: . .  : . :.: ::  .:::::::::::..:::::::.:.:: :...:
CCDS32 ELWNDELQSRKKRK--DPFSPDK-KKPVVVSGPYIVYMLQDLDILEDWTTIRKAMATLGP
     180       190         200        210       220       230      

      240                                                          
pF1KE9 QKRKSDGP                                                    
       .. :.. :                                                    
CCDS32 HRVKTEPPVKLEKHLHSARSEEGRLYYDGEWYIRGQTICIDKKDECPTSAVITTINHDEV
        240       250       260       270       280       290      




246 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 10:20:18 2016 done: Tue Nov  8 10:20:19 2016
 Total Scan time:  1.850 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]