FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE9283, 192 aa
  1>>>pF1KE9283 192 - 192 aa - 192 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1451+/-0.000718; mu= 13.3226+/- 0.043
 mean_var=58.1479+/-11.469, 0's: 0 Z-trim(107.9): 11  B-trim: 0 in 0/52
 Lambda= 0.168193
 statistics sampled from 9844 (9848) to 9844 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.701), E-opt: 0.2 (0.303), width:  16
 Scan time:  1.580

The best scores are:                                      opt bits E(32554)
CCDS1073.1 PMVK gene_id:10654|Hs108|chr1           ( 192) 1299 323.1 6.4e-89


>>CCDS1073.1 PMVK gene_id:10654|Hs108|chr1                (192 aa)
 initn: 1299 init1: 1299 opt: 1299  Z-score: 1709.9  bits: 323.1 E(32554): 6.4e-89
Smith-Waterman score: 1299; 100.0% identity (100.0% similar) in 192 aa overlap (1-192:1-192)

               10        20        30        40        50        60
pF1KE9 MAPLGGAPRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MAPLGGAPRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 RLLDTSTYKEAFRKDMIRWGEEKRQADPGFFCRKIVEGISQPIWLVSDTRRVSDIQWFRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RLLDTSTYKEAFRKDMIRWGEEKRQADPGFFCRKIVEGISQPIWLVSDTRRVSDIQWFRE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE9 AYGAVTQTVRVVALEQSRQQRGWVFTPGVDDAESECGLDNFGDFDWVIENHGVEQRLEEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 AYGAVTQTVRVVALEQSRQQRGWVFTPGVDDAESECGLDNFGDFDWVIENHGVEQRLEEQ
              130       140       150       160       170       180

              190  
pF1KE9 LENLIEFIRSRL
       ::::::::::::
CCDS10 LENLIEFIRSRL
              190  




192 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 10:19:43 2016 done: Tue Nov  8 10:19:44 2016
 Total Scan time:  1.580 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]