FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE9281, 209 aa
  1>>>pF1KE9281 209 - 209 aa - 209 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4200+/-0.000297; mu= 13.4271+/- 0.019
 mean_var=66.0328+/-13.041, 0's: 0 Z-trim(117.9): 2  B-trim: 41 in 1/53
 Lambda= 0.157832
 statistics sampled from 30421 (30423) to 30421 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.725), E-opt: 0.2 (0.357), width:  16
 Scan time:  4.260

The best scores are:                                      opt bits E(85289)
NP_006701 (OMIM: 616011) COP9 signalosome complex  ( 209) 1397 326.2 2.4e-89
NP_937832 (OMIM: 616011) COP9 signalosome complex  ( 160) 1072 252.1 3.6e-67


>>NP_006701 (OMIM: 616011) COP9 signalosome complex subu  (209 aa)
 initn: 1397 init1: 1397 opt: 1397  Z-score: 1725.0  bits: 326.2 E(85289): 2.4e-89
Smith-Waterman score: 1397; 100.0% identity (100.0% similar) in 209 aa overlap (1-209:1-209)

               10        20        30        40        50        60
pF1KE9 MPVAVMAESAFSFKKLLDQCENQELEAPGGIATPPVYGQLLALYLLHNDMNNARYLWKRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MPVAVMAESAFSFKKLLDQCENQELEAPGGIATPPVYGQLLALYLLHNDMNNARYLWKRI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 PPAIKSANSELGGIWSVGQRIWQRDFPGIYTTINAHQWSETVQPIMEALRDATRRRAFAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 PPAIKSANSELGGIWSVGQRIWQRDFPGIYTTINAHQWSETVQPIMEALRDATRRRAFAL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE9 VSQAYTSIIADDFAAFVGLPVEEAVKGILEQGWQADSTTRMVLPRKPVAGALDVSFNKFI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 VSQAYTSIIADDFAAFVGLPVEEAVKGILEQGWQADSTTRMVLPRKPVAGALDVSFNKFI
              130       140       150       160       170       180

              190       200         
pF1KE9 PLSEPAPVPPIPNEQQLARLTDYVAFLEN
       :::::::::::::::::::::::::::::
NP_006 PLSEPAPVPPIPNEQQLARLTDYVAFLEN
              190       200         

>>NP_937832 (OMIM: 616011) COP9 signalosome complex subu  (160 aa)
 initn: 1072 init1: 1072 opt: 1072  Z-score: 1326.9  bits: 252.1 E(85289): 3.6e-67
Smith-Waterman score: 1072; 100.0% identity (100.0% similar) in 160 aa overlap (50-209:1-160)

      20        30        40        50        60        70         
pF1KE9 CENQELEAPGGIATPPVYGQLLALYLLHNDMNNARYLWKRIPPAIKSANSELGGIWSVGQ
                                     ::::::::::::::::::::::::::::::
NP_937                               MNNARYLWKRIPPAIKSANSELGGIWSVGQ
                                             10        20        30

      80        90       100       110       120       130         
pF1KE9 RIWQRDFPGIYTTINAHQWSETVQPIMEALRDATRRRAFALVSQAYTSIIADDFAAFVGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_937 RIWQRDFPGIYTTINAHQWSETVQPIMEALRDATRRRAFALVSQAYTSIIADDFAAFVGL
               40        50        60        70        80        90

     140       150       160       170       180       190         
pF1KE9 PVEEAVKGILEQGWQADSTTRMVLPRKPVAGALDVSFNKFIPLSEPAPVPPIPNEQQLAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_937 PVEEAVKGILEQGWQADSTTRMVLPRKPVAGALDVSFNKFIPLSEPAPVPPIPNEQQLAR
              100       110       120       130       140       150

     200         
pF1KE9 LTDYVAFLEN
       ::::::::::
NP_937 LTDYVAFLEN
              160




209 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 10:18:14 2016 done: Tue Nov  8 10:18:15 2016
 Total Scan time:  4.260 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]