FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE9280, 376 aa
  1>>>pF1KE9280 376 - 376 aa - 376 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.8597+/-0.000818; mu= 10.1849+/- 0.049
 mean_var=115.3376+/-22.995, 0's: 0 Z-trim(111.2): 6  B-trim: 151 in 1/50
 Lambda= 0.119423
 statistics sampled from 12220 (12221) to 12220 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.732), E-opt: 0.2 (0.375), width:  16
 Scan time:  2.420

The best scores are:                                      opt bits E(32554)
CCDS6913.1 SPOUT1 gene_id:51490|Hs108|chr9         ( 376) 2540 448.2 5.5e-126


>>CCDS6913.1 SPOUT1 gene_id:51490|Hs108|chr9              (376 aa)
 initn: 2540 init1: 2540 opt: 2540  Z-score: 2375.4  bits: 448.2 E(32554): 5.5e-126
Smith-Waterman score: 2540; 99.7% identity (99.7% similar) in 376 aa overlap (1-376:1-376)

               10        20        30        40        50        60
pF1KE9 MAERGRKRPCGPGEHGQRIEWRKWKQQKKEEKKKWKDLKLMKKLERQRAQEEQAKRLEEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 MAERGRKRPCGPGEHGQRIEWRKWKQQKKEEKKKWKDLKLMKKLERQRAQEEQAKRLEEE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 EAAAEKEDRGRPYTLSVALPGSILDNAQSPELRTYLAGQIARACAIFCVDEIVVFDEEGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 EAAAEKEDRGRPYTLSVALPGSILDNAQSPELRTYLAGQIARACAIFCVDEIVVFDEEGQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE9 DAKTVEGEFRGVGKKGQACVQLARILQYLECPQYLRKAFFPKHQDLQFAGLLNPLDSPHH
       ::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 DAKTVEGEFTGVGKKGQACVQLARILQYLECPQYLRKAFFPKHQDLQFAGLLNPLDSPHH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE9 MRQDEESEFREGIVVDRPTRPGHGSFVNCGMKKEVKIDKNLEPGLRVTVRLNQQQHPDCK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 MRQDEESEFREGIVVDRPTRPGHGSFVNCGMKKEVKIDKNLEPGLRVTVRLNQQQHPDCK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE9 TYHGKVVSSQDPRTKAGLYWGYTVRLASCLSAVFAEAPFQDGYDLTIGTSERGSDVASAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 TYHGKVVSSQDPRTKAGLYWGYTVRLASCLSAVFAEAPFQDGYDLTIGTSERGSDVASAQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE9 LPNFRHALVVFGGLQGLEAGADADPNLEVAEPSVLFDLYVNTCPGQGSRTIRTEEAILIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 LPNFRHALVVFGGLQGLEAGADADPNLEVAEPSVLFDLYVNTCPGQGSRTIRTEEAILIS
              310       320       330       340       350       360

              370      
pF1KE9 LAALQPGLIQAGARHT
       ::::::::::::::::
CCDS69 LAALQPGLIQAGARHT
              370      




376 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 10:17:42 2016 done: Tue Nov  8 10:17:42 2016
 Total Scan time:  2.420 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]