FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE9258, 286 aa
  1>>>pF1KE9258 286 - 286 aa - 286 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3411+/-0.000326; mu= 15.7254+/- 0.020
 mean_var=77.7255+/-15.536, 0's: 0 Z-trim(116.8): 13  B-trim: 38 in 2/48
 Lambda= 0.145476
 statistics sampled from 28196 (28209) to 28196 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.71), E-opt: 0.2 (0.331), width:  16
 Scan time:  7.150

The best scores are:                                      opt bits E(85289)
NP_002927 (OMIM: 604123,616479) ribonuclease H1 is ( 286) 1985 425.7 4.9e-119
NP_001273763 (OMIM: 604123,616479) ribonuclease H1 ( 260) 1802 387.3 1.7e-107
NP_001273766 (OMIM: 604123,616479) ribonuclease H1 ( 169) 1177 256.0 3.6e-68


>>NP_002927 (OMIM: 604123,616479) ribonuclease H1 isofor  (286 aa)
 initn: 1985 init1: 1985 opt: 1985  Z-score: 2258.1  bits: 425.7 E(85289): 4.9e-119
Smith-Waterman score: 1985; 100.0% identity (100.0% similar) in 286 aa overlap (1-286:1-286)

               10        20        30        40        50        60
pF1KE9 MSWLLFLAHRVALAALPCRRGSRGFGMFYAVRRGRKTGVFLTWNECRAQVDRFPAARFKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MSWLLFLAHRVALAALPCRRGSRGFGMFYAVRRGRKTGVFLTWNECRAQVDRFPAARFKK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 FATEDEAWAFVRKSASPEVSEGHENQHGQESEAKASKRLREPLDGDGHESAEPYAKHMKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 FATEDEAWAFVRKSASPEVSEGHENQHGQESEAKASKRLREPLDGDGHESAEPYAKHMKP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE9 SVEPAPPVSRDTFSYMGDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 SVEPAPPVSRDTFSYMGDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE9 TNQRAEIHAACKAIEQAKTQNINKLVLYTDSMFTINGITNWVQGWKKNGWKTSAGKEVIN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 TNQRAEIHAACKAIEQAKTQNINKLVLYTDSMFTINGITNWVQGWKKNGWKTSAGKEVIN
              190       200       210       220       230       240

              250       260       270       280      
pF1KE9 KEDFVALERLTQGMDIQWMHVPGHSGFIGNEEADRLAREGAKQSED
       ::::::::::::::::::::::::::::::::::::::::::::::
NP_002 KEDFVALERLTQGMDIQWMHVPGHSGFIGNEEADRLAREGAKQSED
              250       260       270       280      

>>NP_001273763 (OMIM: 604123,616479) ribonuclease H1 iso  (260 aa)
 initn: 1802 init1: 1802 opt: 1802  Z-score: 2051.1  bits: 387.3 E(85289): 1.7e-107
Smith-Waterman score: 1802; 100.0% identity (100.0% similar) in 260 aa overlap (27-286:1-260)

               10        20        30        40        50        60
pF1KE9 MSWLLFLAHRVALAALPCRRGSRGFGMFYAVRRGRKTGVFLTWNECRAQVDRFPAARFKK
                                 ::::::::::::::::::::::::::::::::::
NP_001                           MFYAVRRGRKTGVFLTWNECRAQVDRFPAARFKK
                                         10        20        30    

               70        80        90       100       110       120
pF1KE9 FATEDEAWAFVRKSASPEVSEGHENQHGQESEAKASKRLREPLDGDGHESAEPYAKHMKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FATEDEAWAFVRKSASPEVSEGHENQHGQESEAKASKRLREPLDGDGHESAEPYAKHMKP
           40        50        60        70        80        90    

              130       140       150       160       170       180
pF1KE9 SVEPAPPVSRDTFSYMGDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SVEPAPPVSRDTFSYMGDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQ
          100       110       120       130       140       150    

              190       200       210       220       230       240
pF1KE9 TNQRAEIHAACKAIEQAKTQNINKLVLYTDSMFTINGITNWVQGWKKNGWKTSAGKEVIN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TNQRAEIHAACKAIEQAKTQNINKLVLYTDSMFTINGITNWVQGWKKNGWKTSAGKEVIN
          160       170       180       190       200       210    

              250       260       270       280      
pF1KE9 KEDFVALERLTQGMDIQWMHVPGHSGFIGNEEADRLAREGAKQSED
       ::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KEDFVALERLTQGMDIQWMHVPGHSGFIGNEEADRLAREGAKQSED
          220       230       240       250       260

>>NP_001273766 (OMIM: 604123,616479) ribonuclease H1 iso  (169 aa)
 initn: 1177 init1: 1177 opt: 1177  Z-score: 1344.8  bits: 256.0 E(85289): 3.6e-68
Smith-Waterman score: 1177; 100.0% identity (100.0% similar) in 169 aa overlap (118-286:1-169)

        90       100       110       120       130       140       
pF1KE9 GQESEAKASKRLREPLDGDGHESAEPYAKHMKPSVEPAPPVSRDTFSYMGDFVVVYTDGC
                                     ::::::::::::::::::::::::::::::
NP_001                               MKPSVEPAPPVSRDTFSYMGDFVVVYTDGC
                                             10        20        30

       150       160       170       180       190       200       
pF1KE9 CSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVL
               40        50        60        70        80        90

       210       220       230       240       250       260       
pF1KE9 YTDSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGMDIQWMHVPGHSGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YTDSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGMDIQWMHVPGHSGF
              100       110       120       130       140       150

       270       280      
pF1KE9 IGNEEADRLAREGAKQSED
       :::::::::::::::::::
NP_001 IGNEEADRLAREGAKQSED
              160         




286 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 02:34:46 2016 done: Mon Nov  7 02:34:47 2016
 Total Scan time:  7.150 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]