Result of FASTA (ccds) for
pFN21AE9254
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE9254, 748 aa
1>>>pF1KE9254 748 - 748 aa - 748 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.0994+/-0.000849; mu= 13.2851+/- 0.051
mean_var=119.8449+/-23.797, 0's: 0 Z-trim(111.1): 11 B-trim: 0 in 0/50
Lambda= 0.117156
statistics sampled from 12108 (12115) to 12108 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.719), E-opt: 0.2 (0.372), width: 16
Scan time: 3.950
The best scores are: opt bits E(32554)
CCDS33406.1 HJURP gene_id:55355|Hs108|chr2 ( 748) 5033 861.8 0
CCDS63167.1 HJURP gene_id:55355|Hs108|chr2 ( 694) 4149 712.4 5.9e-205
CCDS63166.1 HJURP gene_id:55355|Hs108|chr2 ( 663) 3948 678.4 9.6e-195
>>CCDS33406.1 HJURP gene_id:55355|Hs108|chr2 (748 aa)
initn: 5033 init1: 5033 opt: 5033 Z-score: 4600.1 bits: 861.8 E(32554): 0
Smith-Waterman score: 5033; 100.0% identity (100.0% similar) in 748 aa overlap (1-748:1-748)
10 20 30 40 50 60
pF1KE9 MLGTLRAMEGEDVEDDQLLQKLRASRRRFQRRMQRLIEKYNQPFEDTPVVQMATLTYETP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MLGTLRAMEGEDVEDDQLLQKLRASRRRFQRRMQRLIEKYNQPFEDTPVVQMATLTYETP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE9 QGLRIWGGRLIKERNEGEIQDSSMKPADRTDGSVQAAAWGPELPSHRTVLGADSKSGEVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 QGLRIWGGRLIKERNEGEIQDSSMKPADRTDGSVQAAAWGPELPSHRTVLGADSKSGEVD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE9 ATSDQEESVAWALAPAVPQSPLKNELRRKYLTQVDILLQGAEYFECAGNRAGRDVRVTPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 ATSDQEESVAWALAPAVPQSPLKNELRRKYLTQVDILLQGAEYFECAGNRAGRDVRVTPL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE9 PSLASPAVPAPGYCSRISRKSPGDPAKPASSPREWDPLHPSSTDMALVPRNDSLSLQETS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 PSLASPAVPAPGYCSRISRKSPGDPAKPASSPREWDPLHPSSTDMALVPRNDSLSLQETS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE9 SSSFLSSQPFEDDDICNVTISDLYAGMLHSMSRLLSTKPSSIISTKTFIMQNWNSRRRHR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 SSSFLSSQPFEDDDICNVTISDLYAGMLHSMSRLLSTKPSSIISTKTFIMQNWNSRRRHR
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE9 YKSRMNKTYCKGARRSQRSSKENFIPCSEPVKGTGALRDCKNVLDVSCRKTGLKLEKAFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 YKSRMNKTYCKGARRSQRSSKENFIPCSEPVKGTGALRDCKNVLDVSCRKTGLKLEKAFL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE9 EVNRPQIHKLDPSWKERKVTPSKYSSLIYFDSSATYNLDEENRFRTLKWLISPVKIVSRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 EVNRPQIHKLDPSWKERKVTPSKYSSLIYFDSSATYNLDEENRFRTLKWLISPVKIVSRP
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE9 TIRQGHGENRQREIEIRFDQLHREYCLSPRNQPRRMCLPDSWAMNMYRGGPASPGGLQGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 TIRQGHGENRQREIEIRFDQLHREYCLSPRNQPRRMCLPDSWAMNMYRGGPASPGGLQGL
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE9 ETRRLSLPSSKAKAKSLSEAFENLGKRSLEAGRCLPKSDSSSSLPKTNPTHSATRPQQTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 ETRRLSLPSSKAKAKSLSEAFENLGKRSLEAGRCLPKSDSSSSLPKTNPTHSATRPQQTS
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE9 DLHVQGNSSGIFRKSVSPSKTLSVPDKEVPGHGRNRYDEIKEEFDKLHQKYCLKSPGQMT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 DLHVQGNSSGIFRKSVSPSKTLSVPDKEVPGHGRNRYDEIKEEFDKLHQKYCLKSPGQMT
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE9 VPLCIGVSTDKASMEVRYQTEGFLGKLNPDPHFQGFQKLPSSPLGCRKSLLGSTAIEAPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 VPLCIGVSTDKASMEVRYQTEGFLGKLNPDPHFQGFQKLPSSPLGCRKSLLGSTAIEAPS
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE9 STCVARAITRDGTRDHQFPAKRPRLSEPQGSGRQGNSLGASDGVDNTVRPGDQGSSSQPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 STCVARAITRDGTRDHQFPAKRPRLSEPQGSGRQGNSLGASDGVDNTVRPGDQGSSSQPN
670 680 690 700 710 720
730 740
pF1KE9 SEERGENTSYRMEEKSDFMLEKLETKSV
::::::::::::::::::::::::::::
CCDS33 SEERGENTSYRMEEKSDFMLEKLETKSV
730 740
>>CCDS63167.1 HJURP gene_id:55355|Hs108|chr2 (694 aa)
initn: 4149 init1: 4149 opt: 4149 Z-score: 3793.1 bits: 712.4 E(32554): 5.9e-205
Smith-Waterman score: 4559; 92.8% identity (92.8% similar) in 748 aa overlap (1-748:1-694)
10 20 30 40 50 60
pF1KE9 MLGTLRAMEGEDVEDDQLLQKLRASRRRFQRRMQRLIEKYNQPFEDTPVVQMATLTYETP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 MLGTLRAMEGEDVEDDQLLQKLRASRRRFQRRMQRLIEKYNQPFEDTPVVQMATLTYETP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE9 QGLRIWGGRLIKERNEGEIQDSSMKPADRTDGSVQAAAWGPELPSHRTVLGADSKSGEVD
::::::::::::::::::::
CCDS63 QGLRIWGGRLIKERNEGEIQ----------------------------------------
70 80
130 140 150 160 170 180
pF1KE9 ATSDQEESVAWALAPAVPQSPLKNELRRKYLTQVDILLQGAEYFECAGNRAGRDVRVTPL
::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 --------------PAVPQSPLKNELRRKYLTQVDILLQGAEYFECAGNRAGRDVRVTPL
90 100 110 120
190 200 210 220 230 240
pF1KE9 PSLASPAVPAPGYCSRISRKSPGDPAKPASSPREWDPLHPSSTDMALVPRNDSLSLQETS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 PSLASPAVPAPGYCSRISRKSPGDPAKPASSPREWDPLHPSSTDMALVPRNDSLSLQETS
130 140 150 160 170 180
250 260 270 280 290 300
pF1KE9 SSSFLSSQPFEDDDICNVTISDLYAGMLHSMSRLLSTKPSSIISTKTFIMQNWNSRRRHR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 SSSFLSSQPFEDDDICNVTISDLYAGMLHSMSRLLSTKPSSIISTKTFIMQNWNSRRRHR
190 200 210 220 230 240
310 320 330 340 350 360
pF1KE9 YKSRMNKTYCKGARRSQRSSKENFIPCSEPVKGTGALRDCKNVLDVSCRKTGLKLEKAFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 YKSRMNKTYCKGARRSQRSSKENFIPCSEPVKGTGALRDCKNVLDVSCRKTGLKLEKAFL
250 260 270 280 290 300
370 380 390 400 410 420
pF1KE9 EVNRPQIHKLDPSWKERKVTPSKYSSLIYFDSSATYNLDEENRFRTLKWLISPVKIVSRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 EVNRPQIHKLDPSWKERKVTPSKYSSLIYFDSSATYNLDEENRFRTLKWLISPVKIVSRP
310 320 330 340 350 360
430 440 450 460 470 480
pF1KE9 TIRQGHGENRQREIEIRFDQLHREYCLSPRNQPRRMCLPDSWAMNMYRGGPASPGGLQGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 TIRQGHGENRQREIEIRFDQLHREYCLSPRNQPRRMCLPDSWAMNMYRGGPASPGGLQGL
370 380 390 400 410 420
490 500 510 520 530 540
pF1KE9 ETRRLSLPSSKAKAKSLSEAFENLGKRSLEAGRCLPKSDSSSSLPKTNPTHSATRPQQTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 ETRRLSLPSSKAKAKSLSEAFENLGKRSLEAGRCLPKSDSSSSLPKTNPTHSATRPQQTS
430 440 450 460 470 480
550 560 570 580 590 600
pF1KE9 DLHVQGNSSGIFRKSVSPSKTLSVPDKEVPGHGRNRYDEIKEEFDKLHQKYCLKSPGQMT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 DLHVQGNSSGIFRKSVSPSKTLSVPDKEVPGHGRNRYDEIKEEFDKLHQKYCLKSPGQMT
490 500 510 520 530 540
610 620 630 640 650 660
pF1KE9 VPLCIGVSTDKASMEVRYQTEGFLGKLNPDPHFQGFQKLPSSPLGCRKSLLGSTAIEAPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 VPLCIGVSTDKASMEVRYQTEGFLGKLNPDPHFQGFQKLPSSPLGCRKSLLGSTAIEAPS
550 560 570 580 590 600
670 680 690 700 710 720
pF1KE9 STCVARAITRDGTRDHQFPAKRPRLSEPQGSGRQGNSLGASDGVDNTVRPGDQGSSSQPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 STCVARAITRDGTRDHQFPAKRPRLSEPQGSGRQGNSLGASDGVDNTVRPGDQGSSSQPN
610 620 630 640 650 660
730 740
pF1KE9 SEERGENTSYRMEEKSDFMLEKLETKSV
::::::::::::::::::::::::::::
CCDS63 SEERGENTSYRMEEKSDFMLEKLETKSV
670 680 690
>>CCDS63166.1 HJURP gene_id:55355|Hs108|chr2 (663 aa)
initn: 3948 init1: 3948 opt: 3948 Z-score: 3609.8 bits: 678.4 E(32554): 9.6e-195
Smith-Waterman score: 4295; 88.6% identity (88.6% similar) in 748 aa overlap (1-748:1-663)
10 20 30 40 50 60
pF1KE9 MLGTLRAMEGEDVEDDQLLQKLRASRRRFQRRMQRLIEKYNQPFEDTPVVQMATLTYETP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 MLGTLRAMEGEDVEDDQLLQKLRASRRRFQRRMQRLIEKYNQPFEDTPVVQMATLTYETP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE9 QGLRIWGGRLIKERNEGEIQDSSMKPADRTDGSVQAAAWGPELPSHRTVLGADSKSGEVD
::::::::::::::::::::
CCDS63 QGLRIWGGRLIKERNEGEIQ----------------------------------------
70 80
130 140 150 160 170 180
pF1KE9 ATSDQEESVAWALAPAVPQSPLKNELRRKYLTQVDILLQGAEYFECAGNRAGRDVRVTPL
:::::::::::::::
CCDS63 ---------------------------------------------CAGNRAGRDVRVTPL
90
190 200 210 220 230 240
pF1KE9 PSLASPAVPAPGYCSRISRKSPGDPAKPASSPREWDPLHPSSTDMALVPRNDSLSLQETS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 PSLASPAVPAPGYCSRISRKSPGDPAKPASSPREWDPLHPSSTDMALVPRNDSLSLQETS
100 110 120 130 140 150
250 260 270 280 290 300
pF1KE9 SSSFLSSQPFEDDDICNVTISDLYAGMLHSMSRLLSTKPSSIISTKTFIMQNWNSRRRHR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 SSSFLSSQPFEDDDICNVTISDLYAGMLHSMSRLLSTKPSSIISTKTFIMQNWNSRRRHR
160 170 180 190 200 210
310 320 330 340 350 360
pF1KE9 YKSRMNKTYCKGARRSQRSSKENFIPCSEPVKGTGALRDCKNVLDVSCRKTGLKLEKAFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 YKSRMNKTYCKGARRSQRSSKENFIPCSEPVKGTGALRDCKNVLDVSCRKTGLKLEKAFL
220 230 240 250 260 270
370 380 390 400 410 420
pF1KE9 EVNRPQIHKLDPSWKERKVTPSKYSSLIYFDSSATYNLDEENRFRTLKWLISPVKIVSRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 EVNRPQIHKLDPSWKERKVTPSKYSSLIYFDSSATYNLDEENRFRTLKWLISPVKIVSRP
280 290 300 310 320 330
430 440 450 460 470 480
pF1KE9 TIRQGHGENRQREIEIRFDQLHREYCLSPRNQPRRMCLPDSWAMNMYRGGPASPGGLQGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 TIRQGHGENRQREIEIRFDQLHREYCLSPRNQPRRMCLPDSWAMNMYRGGPASPGGLQGL
340 350 360 370 380 390
490 500 510 520 530 540
pF1KE9 ETRRLSLPSSKAKAKSLSEAFENLGKRSLEAGRCLPKSDSSSSLPKTNPTHSATRPQQTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 ETRRLSLPSSKAKAKSLSEAFENLGKRSLEAGRCLPKSDSSSSLPKTNPTHSATRPQQTS
400 410 420 430 440 450
550 560 570 580 590 600
pF1KE9 DLHVQGNSSGIFRKSVSPSKTLSVPDKEVPGHGRNRYDEIKEEFDKLHQKYCLKSPGQMT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 DLHVQGNSSGIFRKSVSPSKTLSVPDKEVPGHGRNRYDEIKEEFDKLHQKYCLKSPGQMT
460 470 480 490 500 510
610 620 630 640 650 660
pF1KE9 VPLCIGVSTDKASMEVRYQTEGFLGKLNPDPHFQGFQKLPSSPLGCRKSLLGSTAIEAPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 VPLCIGVSTDKASMEVRYQTEGFLGKLNPDPHFQGFQKLPSSPLGCRKSLLGSTAIEAPS
520 530 540 550 560 570
670 680 690 700 710 720
pF1KE9 STCVARAITRDGTRDHQFPAKRPRLSEPQGSGRQGNSLGASDGVDNTVRPGDQGSSSQPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 STCVARAITRDGTRDHQFPAKRPRLSEPQGSGRQGNSLGASDGVDNTVRPGDQGSSSQPN
580 590 600 610 620 630
730 740
pF1KE9 SEERGENTSYRMEEKSDFMLEKLETKSV
::::::::::::::::::::::::::::
CCDS63 SEERGENTSYRMEEKSDFMLEKLETKSV
640 650 660
748 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 12:05:08 2016 done: Sun Nov 6 12:05:09 2016
Total Scan time: 3.950 Total Display time: 0.060
Function used was FASTA [36.3.4 Apr, 2011]