FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE9252, 88 aa
  1>>>pF1KE9252 88 - 88 aa - 88 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.4803+/-0.000299; mu= 12.2700+/- 0.019
 mean_var=46.5942+/- 8.977, 0's: 0 Z-trim(116.3): 9  B-trim: 0 in 0/50
 Lambda= 0.187892
 statistics sampled from 27423 (27429) to 27423 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.732), E-opt: 0.2 (0.322), width:  16
 Scan time:  4.200

The best scores are:                                      opt bits E(85289)
NP_001012525 (OMIM: 611264) centromere protein W i (  88)  561 158.7 1.1e-39
NP_001273453 (OMIM: 611264) centromere protein W i ( 103)  306 89.6 8.2e-19
XP_016866334 (OMIM: 611264) PREDICTED: centromere  (  67)  264 78.1 1.5e-15
NP_001273454 (OMIM: 611264) centromere protein W i (  67)  264 78.1 1.5e-15


>>NP_001012525 (OMIM: 611264) centromere protein W isofo  (88 aa)
 initn: 561 init1: 561 opt: 561  Z-score: 833.3  bits: 158.7 E(85289): 1.1e-39
Smith-Waterman score: 561; 100.0% identity (100.0% similar) in 88 aa overlap (1-88:1-88)

               10        20        30        40        50        60
pF1KE9 MALSTIVSQRKQIKRKAPRGFLKRVFKRKKPQLRLEKSGDLLVHLNCLLFVHRLAEESRT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MALSTIVSQRKQIKRKAPRGFLKRVFKRKKPQLRLEKSGDLLVHLNCLLFVHRLAEESRT
               10        20        30        40        50        60

               70        80        
pF1KE9 NACASKCRVINKEHVLAAAKVILKKSRG
       ::::::::::::::::::::::::::::
NP_001 NACASKCRVINKEHVLAAAKVILKKSRG
               70        80        

>>NP_001273453 (OMIM: 611264) centromere protein W isofo  (103 aa)
 initn: 312 init1: 297 opt: 306  Z-score: 458.7  bits: 89.6 E(85289): 8.2e-19
Smith-Waterman score: 521; 85.4% identity (85.4% similar) in 103 aa overlap (1-88:1-103)

               10        20        30        40                    
pF1KE9 MALSTIVSQRKQIKRKAPRGFLKRVFKRKKPQLRLEKSGDLLV---------------HL
       :::::::::::::::::::::::::::::::::::::::::::               ::
NP_001 MALSTIVSQRKQIKRKAPRGFLKRVFKRKKPQLRLEKSGDLLVRFHPFSGWEWGTGEVHL
               10        20        30        40        50        60

          50        60        70        80        
pF1KE9 NCLLFVHRLAEESRTNACASKCRVINKEHVLAAAKVILKKSRG
       :::::::::::::::::::::::::::::::::::::::::::
NP_001 NCLLFVHRLAEESRTNACASKCRVINKEHVLAAAKVILKKSRG
               70        80        90       100   

>>XP_016866334 (OMIM: 611264) PREDICTED: centromere prot  (67 aa)
 initn: 264 init1: 264 opt: 264  Z-score: 400.0  bits: 78.1 E(85289): 1.5e-15
Smith-Waterman score: 264; 100.0% identity (100.0% similar) in 42 aa overlap (1-42:1-42)

               10        20        30        40        50        60
pF1KE9 MALSTIVSQRKQIKRKAPRGFLKRVFKRKKPQLRLEKSGDLLVHLNCLLFVHRLAEESRT
       ::::::::::::::::::::::::::::::::::::::::::                  
XP_016 MALSTIVSQRKQIKRKAPRGFLKRVFKRKKPQLRLEKSGDLLKSPGQTLVRVNVESLTRS
               10        20        30        40        50        60

               70        80        
pF1KE9 NACASKCRVINKEHVLAAAKVILKKSRG
                                   
XP_016 MYWPQQR                     
                                   

>>NP_001273454 (OMIM: 611264) centromere protein W isofo  (67 aa)
 initn: 264 init1: 264 opt: 264  Z-score: 400.0  bits: 78.1 E(85289): 1.5e-15
Smith-Waterman score: 264; 100.0% identity (100.0% similar) in 42 aa overlap (1-42:1-42)

               10        20        30        40        50        60
pF1KE9 MALSTIVSQRKQIKRKAPRGFLKRVFKRKKPQLRLEKSGDLLVHLNCLLFVHRLAEESRT
       ::::::::::::::::::::::::::::::::::::::::::                  
NP_001 MALSTIVSQRKQIKRKAPRGFLKRVFKRKKPQLRLEKSGDLLKSPGQTLVRVNVESLTRS
               10        20        30        40        50        60

               70        80        
pF1KE9 NACASKCRVINKEHVLAAAKVILKKSRG
                                   
NP_001 MYWPQQR                     
                                   




88 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 11:18:32 2016 done: Sun Nov  6 11:18:33 2016
 Total Scan time:  4.200 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]