Result of FASTA (omim) for
pFN21AE6893
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6893, 365 aa
1>>>pF1KE6893 365 - 365 aa - 365 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3740+/-0.000355; mu= 16.8240+/- 0.022
mean_var=78.2849+/-15.588, 0's: 0 Z-trim(115.6): 8 B-trim: 170 in 1/53
Lambda= 0.144956
statistics sampled from 26152 (26160) to 26152 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.687), E-opt: 0.2 (0.307), width: 16
Scan time: 5.720
The best scores are: opt bits E(85289)
NP_000139 (OMIM: 211100,616754) galactoside 2-alph ( 365) 2569 546.7 3.1e-155
XP_016882042 (OMIM: 211100,616754) PREDICTED: gala ( 365) 2569 546.7 3.1e-155
NP_001316806 (OMIM: 211100,616754) galactoside 2-a ( 365) 2569 546.7 3.1e-155
XP_016882041 (OMIM: 211100,616754) PREDICTED: gala ( 488) 2569 546.8 3.9e-155
XP_006723190 (OMIM: 211100,616754) PREDICTED: gala ( 488) 2569 546.8 3.9e-155
NP_000502 (OMIM: 182100,612542) galactoside 2-alph ( 343) 1413 304.9 1.8e-82
NP_001091107 (OMIM: 182100,612542) galactoside 2-a ( 343) 1413 304.9 1.8e-82
>>NP_000139 (OMIM: 211100,616754) galactoside 2-alpha-L- (365 aa)
initn: 2569 init1: 2569 opt: 2569 Z-score: 2907.9 bits: 546.7 E(85289): 3.1e-155
Smith-Waterman score: 2569; 100.0% identity (100.0% similar) in 365 aa overlap (1-365:1-365)
10 20 30 40 50 60
pF1KE6 MWLRSHRQLCLAFLLVCVLSVIFFLHIHQDSFPHGLGLSILCPDRRLVTPPVAIFCLPGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MWLRSHRQLCLAFLLVCVLSVIFFLHIHQDSFPHGLGLSILCPDRRLVTPPVAIFCLPGT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 AMGPNASSSCPQHPASLSGTWTVYPNGRFGNQMGQYATLLALAQLNGRRAFILPAMHAAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 AMGPNASSSCPQHPASLSGTWTVYPNGRFGNQMGQYATLLALAQLNGRRAFILPAMHAAL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 APVFRITLPVLAPEVDSRTPWRELQLHDWMSEEYADLRDPFLKLSGFPCSWTFFHHLREQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 APVFRITLPVLAPEVDSRTPWRELQLHDWMSEEYADLRDPFLKLSGFPCSWTFFHHLREQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 IRREFTLHDHLREEAQSVLGQLRLGRTGDRPRTFVGVHVRRGDYLQVMPQRWKGVVGDSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 IRREFTLHDHLREEAQSVLGQLRLGRTGDRPRTFVGVHVRRGDYLQVMPQRWKGVVGDSA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE6 YLRQAMDWFRARHEAPVFVVTSNGMEWCKENIDTSQGDVTFAGDGQEATPWKDFALLTQC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 YLRQAMDWFRARHEAPVFVVTSNGMEWCKENIDTSQGDVTFAGDGQEATPWKDFALLTQC
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE6 NHTIMTIGTFGFWAAYLAGGDTVYLANFTLPDSEFLKIFKPEAAFLPEWVGINADLSPLW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 NHTIMTIGTFGFWAAYLAGGDTVYLANFTLPDSEFLKIFKPEAAFLPEWVGINADLSPLW
310 320 330 340 350 360
pF1KE6 TLAKP
:::::
NP_000 TLAKP
>>XP_016882042 (OMIM: 211100,616754) PREDICTED: galactos (365 aa)
initn: 2569 init1: 2569 opt: 2569 Z-score: 2907.9 bits: 546.7 E(85289): 3.1e-155
Smith-Waterman score: 2569; 100.0% identity (100.0% similar) in 365 aa overlap (1-365:1-365)
10 20 30 40 50 60
pF1KE6 MWLRSHRQLCLAFLLVCVLSVIFFLHIHQDSFPHGLGLSILCPDRRLVTPPVAIFCLPGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MWLRSHRQLCLAFLLVCVLSVIFFLHIHQDSFPHGLGLSILCPDRRLVTPPVAIFCLPGT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 AMGPNASSSCPQHPASLSGTWTVYPNGRFGNQMGQYATLLALAQLNGRRAFILPAMHAAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AMGPNASSSCPQHPASLSGTWTVYPNGRFGNQMGQYATLLALAQLNGRRAFILPAMHAAL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 APVFRITLPVLAPEVDSRTPWRELQLHDWMSEEYADLRDPFLKLSGFPCSWTFFHHLREQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 APVFRITLPVLAPEVDSRTPWRELQLHDWMSEEYADLRDPFLKLSGFPCSWTFFHHLREQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 IRREFTLHDHLREEAQSVLGQLRLGRTGDRPRTFVGVHVRRGDYLQVMPQRWKGVVGDSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IRREFTLHDHLREEAQSVLGQLRLGRTGDRPRTFVGVHVRRGDYLQVMPQRWKGVVGDSA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE6 YLRQAMDWFRARHEAPVFVVTSNGMEWCKENIDTSQGDVTFAGDGQEATPWKDFALLTQC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YLRQAMDWFRARHEAPVFVVTSNGMEWCKENIDTSQGDVTFAGDGQEATPWKDFALLTQC
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE6 NHTIMTIGTFGFWAAYLAGGDTVYLANFTLPDSEFLKIFKPEAAFLPEWVGINADLSPLW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NHTIMTIGTFGFWAAYLAGGDTVYLANFTLPDSEFLKIFKPEAAFLPEWVGINADLSPLW
310 320 330 340 350 360
pF1KE6 TLAKP
:::::
XP_016 TLAKP
>>NP_001316806 (OMIM: 211100,616754) galactoside 2-alpha (365 aa)
initn: 2569 init1: 2569 opt: 2569 Z-score: 2907.9 bits: 546.7 E(85289): 3.1e-155
Smith-Waterman score: 2569; 100.0% identity (100.0% similar) in 365 aa overlap (1-365:1-365)
10 20 30 40 50 60
pF1KE6 MWLRSHRQLCLAFLLVCVLSVIFFLHIHQDSFPHGLGLSILCPDRRLVTPPVAIFCLPGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MWLRSHRQLCLAFLLVCVLSVIFFLHIHQDSFPHGLGLSILCPDRRLVTPPVAIFCLPGT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 AMGPNASSSCPQHPASLSGTWTVYPNGRFGNQMGQYATLLALAQLNGRRAFILPAMHAAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AMGPNASSSCPQHPASLSGTWTVYPNGRFGNQMGQYATLLALAQLNGRRAFILPAMHAAL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 APVFRITLPVLAPEVDSRTPWRELQLHDWMSEEYADLRDPFLKLSGFPCSWTFFHHLREQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 APVFRITLPVLAPEVDSRTPWRELQLHDWMSEEYADLRDPFLKLSGFPCSWTFFHHLREQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 IRREFTLHDHLREEAQSVLGQLRLGRTGDRPRTFVGVHVRRGDYLQVMPQRWKGVVGDSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IRREFTLHDHLREEAQSVLGQLRLGRTGDRPRTFVGVHVRRGDYLQVMPQRWKGVVGDSA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE6 YLRQAMDWFRARHEAPVFVVTSNGMEWCKENIDTSQGDVTFAGDGQEATPWKDFALLTQC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YLRQAMDWFRARHEAPVFVVTSNGMEWCKENIDTSQGDVTFAGDGQEATPWKDFALLTQC
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE6 NHTIMTIGTFGFWAAYLAGGDTVYLANFTLPDSEFLKIFKPEAAFLPEWVGINADLSPLW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NHTIMTIGTFGFWAAYLAGGDTVYLANFTLPDSEFLKIFKPEAAFLPEWVGINADLSPLW
310 320 330 340 350 360
pF1KE6 TLAKP
:::::
NP_001 TLAKP
>>XP_016882041 (OMIM: 211100,616754) PREDICTED: galactos (488 aa)
initn: 2569 init1: 2569 opt: 2569 Z-score: 2906.1 bits: 546.8 E(85289): 3.9e-155
Smith-Waterman score: 2569; 100.0% identity (100.0% similar) in 365 aa overlap (1-365:124-488)
10 20 30
pF1KE6 MWLRSHRQLCLAFLLVCVLSVIFFLHIHQD
::::::::::::::::::::::::::::::
XP_016 GAAGCGLPLRRVRSGHEKRTVDLPPASSSAMWLRSHRQLCLAFLLVCVLSVIFFLHIHQD
100 110 120 130 140 150
40 50 60 70 80 90
pF1KE6 SFPHGLGLSILCPDRRLVTPPVAIFCLPGTAMGPNASSSCPQHPASLSGTWTVYPNGRFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SFPHGLGLSILCPDRRLVTPPVAIFCLPGTAMGPNASSSCPQHPASLSGTWTVYPNGRFG
160 170 180 190 200 210
100 110 120 130 140 150
pF1KE6 NQMGQYATLLALAQLNGRRAFILPAMHAALAPVFRITLPVLAPEVDSRTPWRELQLHDWM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NQMGQYATLLALAQLNGRRAFILPAMHAALAPVFRITLPVLAPEVDSRTPWRELQLHDWM
220 230 240 250 260 270
160 170 180 190 200 210
pF1KE6 SEEYADLRDPFLKLSGFPCSWTFFHHLREQIRREFTLHDHLREEAQSVLGQLRLGRTGDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SEEYADLRDPFLKLSGFPCSWTFFHHLREQIRREFTLHDHLREEAQSVLGQLRLGRTGDR
280 290 300 310 320 330
220 230 240 250 260 270
pF1KE6 PRTFVGVHVRRGDYLQVMPQRWKGVVGDSAYLRQAMDWFRARHEAPVFVVTSNGMEWCKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PRTFVGVHVRRGDYLQVMPQRWKGVVGDSAYLRQAMDWFRARHEAPVFVVTSNGMEWCKE
340 350 360 370 380 390
280 290 300 310 320 330
pF1KE6 NIDTSQGDVTFAGDGQEATPWKDFALLTQCNHTIMTIGTFGFWAAYLAGGDTVYLANFTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NIDTSQGDVTFAGDGQEATPWKDFALLTQCNHTIMTIGTFGFWAAYLAGGDTVYLANFTL
400 410 420 430 440 450
340 350 360
pF1KE6 PDSEFLKIFKPEAAFLPEWVGINADLSPLWTLAKP
:::::::::::::::::::::::::::::::::::
XP_016 PDSEFLKIFKPEAAFLPEWVGINADLSPLWTLAKP
460 470 480
>>XP_006723190 (OMIM: 211100,616754) PREDICTED: galactos (488 aa)
initn: 2569 init1: 2569 opt: 2569 Z-score: 2906.1 bits: 546.8 E(85289): 3.9e-155
Smith-Waterman score: 2569; 100.0% identity (100.0% similar) in 365 aa overlap (1-365:124-488)
10 20 30
pF1KE6 MWLRSHRQLCLAFLLVCVLSVIFFLHIHQD
::::::::::::::::::::::::::::::
XP_006 GAAGCGLPLRRVRSGHEKRTVDLPPASSSAMWLRSHRQLCLAFLLVCVLSVIFFLHIHQD
100 110 120 130 140 150
40 50 60 70 80 90
pF1KE6 SFPHGLGLSILCPDRRLVTPPVAIFCLPGTAMGPNASSSCPQHPASLSGTWTVYPNGRFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SFPHGLGLSILCPDRRLVTPPVAIFCLPGTAMGPNASSSCPQHPASLSGTWTVYPNGRFG
160 170 180 190 200 210
100 110 120 130 140 150
pF1KE6 NQMGQYATLLALAQLNGRRAFILPAMHAALAPVFRITLPVLAPEVDSRTPWRELQLHDWM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 NQMGQYATLLALAQLNGRRAFILPAMHAALAPVFRITLPVLAPEVDSRTPWRELQLHDWM
220 230 240 250 260 270
160 170 180 190 200 210
pF1KE6 SEEYADLRDPFLKLSGFPCSWTFFHHLREQIRREFTLHDHLREEAQSVLGQLRLGRTGDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SEEYADLRDPFLKLSGFPCSWTFFHHLREQIRREFTLHDHLREEAQSVLGQLRLGRTGDR
280 290 300 310 320 330
220 230 240 250 260 270
pF1KE6 PRTFVGVHVRRGDYLQVMPQRWKGVVGDSAYLRQAMDWFRARHEAPVFVVTSNGMEWCKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PRTFVGVHVRRGDYLQVMPQRWKGVVGDSAYLRQAMDWFRARHEAPVFVVTSNGMEWCKE
340 350 360 370 380 390
280 290 300 310 320 330
pF1KE6 NIDTSQGDVTFAGDGQEATPWKDFALLTQCNHTIMTIGTFGFWAAYLAGGDTVYLANFTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 NIDTSQGDVTFAGDGQEATPWKDFALLTQCNHTIMTIGTFGFWAAYLAGGDTVYLANFTL
400 410 420 430 440 450
340 350 360
pF1KE6 PDSEFLKIFKPEAAFLPEWVGINADLSPLWTLAKP
:::::::::::::::::::::::::::::::::::
XP_006 PDSEFLKIFKPEAAFLPEWVGINADLSPLWTLAKP
460 470 480
>>NP_000502 (OMIM: 182100,612542) galactoside 2-alpha-L- (343 aa)
initn: 1436 init1: 866 opt: 1413 Z-score: 1601.7 bits: 304.9 E(85289): 1.8e-82
Smith-Waterman score: 1413; 67.7% identity (85.4% similar) in 294 aa overlap (66-359:49-340)
40 50 60 70 80 90
pF1KE6 LGLSILCPDRRLVTPPVAIFCLPGTAMGPNASSSCPQHPASLSGTWTVYPNGRFGNQMGQ
::.: :..: : ::. ::.:::::.
NP_000 VFTVSTIFHVQQRLAKIQAMWELPVQIPVLASTSKALGPSQLRGMWTINAIGRLGNQMGE
20 30 40 50 60 70
100 110 120 130 140 150
pF1KE6 YATLLALAQLNGRRAFILPAMHAALAPVFRITLPVLAPEVDSRTPWRELQLHDWMSEEYA
:::: :::..::: ::: ::..:::.:::::::: . :: ::.. .:.::: :::
NP_000 YATLYALAKMNGRPAFIPAQMHSTLAPIFRITLPVLHSATASRIPWQNYHLNDWMEEEYR
80 90 100 110 120 130
160 170 180 190 200 210
pF1KE6 DLRDPFLKLSGFPCSWTFFHHLREQIRREFTLHDHLREEAQSVLGQLRLGRTGDRPRTFV
. .....:.::::::.::::..: .:::::::.:::::. : :... :.:: :::
NP_000 HIPGEYVRFTGYPCSWTFYHHLRQEILQEFTLHDHVREEAQKFLRGLQVN--GSRPGTFV
140 150 160 170 180 190
220 230 240 250 260 270
pF1KE6 GVHVRRGDYLQVMPQRWKGVVGDSAYLRQAMDWFRARHEAPVFVVTSNGMEWCKENIDTS
:::::::::..:::. :::::.: ::.::.::::::. . .:::::::: ::.::::::
NP_000 GVHVRRGDYVHVMPKVWKGVVADRRYLQQALDWFRARYSSLIFVVTSNGMAWCRENIDTS
200 210 220 230 240 250
280 290 300 310 320 330
pF1KE6 QGDVTFAGDGQEATPWKDFALLTQCNHTIMTIGTFGFWAAYLAGGDTVYLANFTLPDSEF
.:::.::::: :..: ::::::::::::::::::::.:::::.::::.::::.::::: :
NP_000 HGDVVFAGDGIEGSPAKDFALLTQCNHTIMTIGTFGIWAAYLTGGDTIYLANYTLPDSPF
260 270 280 290 300 310
340 350 360
pF1KE6 LKIFKPEAAFLPEWVGINADLSPLWTLAKP
::::::::::::::.:: ::::::
NP_000 LKIFKPEAAFLPEWTGIAADLSPLLKH
320 330 340
>>NP_001091107 (OMIM: 182100,612542) galactoside 2-alpha (343 aa)
initn: 1436 init1: 866 opt: 1413 Z-score: 1601.7 bits: 304.9 E(85289): 1.8e-82
Smith-Waterman score: 1413; 67.7% identity (85.4% similar) in 294 aa overlap (66-359:49-340)
40 50 60 70 80 90
pF1KE6 LGLSILCPDRRLVTPPVAIFCLPGTAMGPNASSSCPQHPASLSGTWTVYPNGRFGNQMGQ
::.: :..: : ::. ::.:::::.
NP_001 VFTVSTIFHVQQRLAKIQAMWELPVQIPVLASTSKALGPSQLRGMWTINAIGRLGNQMGE
20 30 40 50 60 70
100 110 120 130 140 150
pF1KE6 YATLLALAQLNGRRAFILPAMHAALAPVFRITLPVLAPEVDSRTPWRELQLHDWMSEEYA
:::: :::..::: ::: ::..:::.:::::::: . :: ::.. .:.::: :::
NP_001 YATLYALAKMNGRPAFIPAQMHSTLAPIFRITLPVLHSATASRIPWQNYHLNDWMEEEYR
80 90 100 110 120 130
160 170 180 190 200 210
pF1KE6 DLRDPFLKLSGFPCSWTFFHHLREQIRREFTLHDHLREEAQSVLGQLRLGRTGDRPRTFV
. .....:.::::::.::::..: .:::::::.:::::. : :... :.:: :::
NP_001 HIPGEYVRFTGYPCSWTFYHHLRQEILQEFTLHDHVREEAQKFLRGLQVN--GSRPGTFV
140 150 160 170 180 190
220 230 240 250 260 270
pF1KE6 GVHVRRGDYLQVMPQRWKGVVGDSAYLRQAMDWFRARHEAPVFVVTSNGMEWCKENIDTS
:::::::::..:::. :::::.: ::.::.::::::. . .:::::::: ::.::::::
NP_001 GVHVRRGDYVHVMPKVWKGVVADRRYLQQALDWFRARYSSLIFVVTSNGMAWCRENIDTS
200 210 220 230 240 250
280 290 300 310 320 330
pF1KE6 QGDVTFAGDGQEATPWKDFALLTQCNHTIMTIGTFGFWAAYLAGGDTVYLANFTLPDSEF
.:::.::::: :..: ::::::::::::::::::::.:::::.::::.::::.::::: :
NP_001 HGDVVFAGDGIEGSPAKDFALLTQCNHTIMTIGTFGIWAAYLTGGDTIYLANYTLPDSPF
260 270 280 290 300 310
340 350 360
pF1KE6 LKIFKPEAAFLPEWVGINADLSPLWTLAKP
::::::::::::::.:: ::::::
NP_001 LKIFKPEAAFLPEWTGIAADLSPLLKH
320 330 340
365 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 03:17:10 2016 done: Tue Nov 8 03:17:11 2016
Total Scan time: 5.720 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]