FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6781, 567 aa
  1>>>pF1KE6781 567 - 567 aa - 567 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.4990+/-0.000916; mu= 12.6314+/- 0.055
 mean_var=96.6152+/-19.529, 0's: 0 Z-trim(108.2): 93  B-trim: 0 in 0/52
 Lambda= 0.130482
 statistics sampled from 9974 (10069) to 9974 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.684), E-opt: 0.2 (0.309), width:  16
 Scan time:  2.260

The best scores are:                                      opt bits E(32554)
CCDS45088.1 RABGGTA gene_id:5875|Hs108|chr14       ( 567) 3831 731.9 5.1e-211


>>CCDS45088.1 RABGGTA gene_id:5875|Hs108|chr14            (567 aa)
 initn: 3831 init1: 3831 opt: 3831  Z-score: 3901.9  bits: 731.9 E(32554): 5.1e-211
Smith-Waterman score: 3831; 100.0% identity (100.0% similar) in 567 aa overlap (1-567:1-567)

               10        20        30        40        50        60
pF1KE6 MHGRLKVKTSEEQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MHGRLKVKTSEEQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 DFATLWNCRREVLQQLETQKSPEELAALVKAELGFLESCLRVNPKSYGTWHHRCWLLGRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 DFATLWNCRREVLQQLETQKSPEELAALVKAELGFLESCLRVNPKSYGTWHHRCWLLGRL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 PEPNWTRELELCARFLEVDERNFHCWDYRRFVATQAAVPPAEELAFTDSLITRNFSNYSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 PEPNWTRELELCARFLEVDERNFHCWDYRRFVATQAAVPPAEELAFTDSLITRNFSNYSS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 WHYRSCLLPQLHPQPDSGPQGRLPEDVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 WHYRSCLLPQLHPQPDSGPQGRLPEDVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 PQDALRCLHVSRDEACLTVSFSRPLLVGSRMEILLLMVDDSPLIVEWRTPDGRNRPSHVW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 PQDALRCLHVSRDEACLTVSFSRPLLVGSRMEILLLMVDDSPLIVEWRTPDGRNRPSHVW
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE6 LCDLPAASLNDQLPQHTFRVIWTAGDVQKECVLLKGRQEGWCRDSTTDEQLFRCELSVEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LCDLPAASLNDQLPQHTFRVIWTAGDVQKECVLLKGRQEGWCRDSTTDEQLFRCELSVEK
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE6 STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFQTLKAVDPMRAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFQTLKAVDPMRAT
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE6 YLDDLRSKFLLENSVLKMEYAEVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRTLPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 YLDDLRSKFLLENSVLKMEYAEVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRTLPP
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE6 ALAALRCLEVLQASDNAIESLDGVTNLPRLQELLLCNNRLQQPAVLQPLASCPRLVLLNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 ALAALRCLEVLQASDNAIESLDGVTNLPRLQELLLCNNRLQQPAVLQPLASCPRLVLLNL
              490       500       510       520       530       540

              550       560       
pF1KE6 QGNPLCQAVGILEQLAELLPSVSSVLT
       :::::::::::::::::::::::::::
CCDS45 QGNPLCQAVGILEQLAELLPSVSSVLT
              550       560       




567 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 16:17:58 2016 done: Tue Nov  8 16:17:58 2016
 Total Scan time:  2.260 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]