Result of FASTA (omim) for
pFN21AE6758
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6758, 583 aa
1>>>pF1KE6758 583 - 583 aa - 583 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.5001+/-0.000304; mu= 14.2183+/- 0.019
mean_var=110.3439+/-21.973, 0's: 0 Z-trim(118.6): 12 B-trim: 1565 in 1/59
Lambda= 0.122096
statistics sampled from 31688 (31700) to 31688 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.72), E-opt: 0.2 (0.372), width: 16
Scan time: 9.080
The best scores are: opt bits E(85289)
NP_001159603 (OMIM: 610885) crossover junction end ( 583) 3867 692.0 1.4e-198
NP_689676 (OMIM: 610885) crossover junction endonu ( 570) 2476 447.0 8e-125
XP_016879725 (OMIM: 610885) PREDICTED: crossover j ( 541) 2036 369.5 1.6e-101
XP_011522697 (OMIM: 610885) PREDICTED: crossover j ( 247) 1326 244.2 3.9e-64
XP_005257138 (OMIM: 610885) PREDICTED: crossover j ( 413) 1326 244.3 5.9e-64
XP_016878515 (OMIM: 610886) PREDICTED: probable cr ( 348) 508 100.2 1.2e-20
XP_016878514 (OMIM: 610886) PREDICTED: probable cr ( 351) 508 100.2 1.2e-20
NP_001244299 (OMIM: 610886) probable crossover jun ( 379) 508 100.2 1.3e-20
>>NP_001159603 (OMIM: 610885) crossover junction endonuc (583 aa)
initn: 3867 init1: 3867 opt: 3867 Z-score: 3686.1 bits: 692.0 E(85289): 1.4e-198
Smith-Waterman score: 3867; 99.8% identity (100.0% similar) in 583 aa overlap (1-583:1-583)
10 20 30 40 50 60
pF1KE6 MALKKSSPSLDSGDSDSEELPTFAFLKKEPSSTKRRQPEREEKIVVVDISDCEASCPPAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MALKKSSPSLDSGDSDSEELPTFAFLKKEPSSTKRRQPEREEKIVVVDISDCEASCPPAP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 ELFSPPVPDIAETVTQTQPVRLLSSESEDEEEFIPLAQRLTCKFLTHKQLSPEDSSSPVK
::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ELFSPPVPEIAETVTQTQPVRLLSSESEDEEEFIPLAQRLTCKFLTHKQLSPEDSSSPVK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 SVLDHQNNEGASCDWKKPFPKIPEVPLHDTPERSAADNKDLILDPCCQLPAYLSTCPGQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SVLDHQNNEGASCDWKKPFPKIPEVPLHDTPERSAADNKDLILDPCCQLPAYLSTCPGQS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 SSLAVTKTNSDILPPQKKTKPSQKVQGRGSHGCRQQRQARQKESTLRRQERKNAALVTRM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SSLAVTKTNSDILPPQKKTKPSQKVQGRGSHGCRQQRQARQKESTLRRQERKNAALVTRM
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE6 KAQRPEECLKHIIVVLDPVLLQMEGGGQLLGALQTMECRCVIEAQAVPCSVTWRRRAGPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KAQRPEECLKHIIVVLDPVLLQMEGGGQLLGALQTMECRCVIEAQAVPCSVTWRRRAGPS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE6 EDREDWVEEPTVLVLLRAEAFVSMIDNGKQGSLDSTMKGKETLQGFVTDITAKTAGKALS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EDREDWVEEPTVLVLLRAEAFVSMIDNGKQGSLDSTMKGKETLQGFVTDITAKTAGKALS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE6 LVIVDQEKCFSLELLFFDFLPCTSAQNPPRRGKQGANKQTKKQQQRQPEASIGSMVSRVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LVIVDQEKCFSLELLFFDFLPCTSAQNPPRRGKQGANKQTKKQQQRQPEASIGSMVSRVD
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE6 AEEALVDLQLHTEAQAQIVQSWKELADFTCAFTKAVAEAPFKKLRDETTFSFCLESDWAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AEEALVDLQLHTEAQAQIVQSWKELADFTCAFTKAVAEAPFKKLRDETTFSFCLESDWAG
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE6 GVKVDLAGRGLALVWRRQIQQLNRVSLEMASAVVNAYPSPQLLVQAYQQCFSDKERQNLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GVKVDLAGRGLALVWRRQIQQLNRVSLEMASAVVNAYPSPQLLVQAYQQCFSDKERQNLL
490 500 510 520 530 540
550 560 570 580
pF1KE6 ADIQVRRGEGVTSTSRRIGPELSRRIYLQMTTLQPHLSLDSAD
:::::::::::::::::::::::::::::::::::::::::::
NP_001 ADIQVRRGEGVTSTSRRIGPELSRRIYLQMTTLQPHLSLDSAD
550 560 570 580
>>NP_689676 (OMIM: 610885) crossover junction endonuclea (570 aa)
initn: 2476 init1: 2476 opt: 2476 Z-score: 2362.0 bits: 447.0 E(85289): 8e-125
Smith-Waterman score: 3740; 97.6% identity (97.8% similar) in 583 aa overlap (1-583:1-570)
10 20 30 40 50 60
pF1KE6 MALKKSSPSLDSGDSDSEELPTFAFLKKEPSSTKRRQPEREEKIVVVDISDCEASCPPAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 MALKKSSPSLDSGDSDSEELPTFAFLKKEPSSTKRRQPEREEKIVVVDISDCEASCPPAP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 ELFSPPVPDIAETVTQTQPVRLLSSESEDEEEFIPLAQRLTCKFLTHKQLSPEDSSSPVK
::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 ELFSPPVPEIAETVTQTQPVRLLSSESEDEEEFIPLAQRLTCKFLTHKQLSPEDSSSPVK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 SVLDHQNNEGASCDWKKPFPKIPEVPLHDTPERSAADNKDLILDPCCQLPAYLSTCPGQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 SVLDHQNNEGASCDWKKPFPKIPEVPLHDTPERSAADNKDLILDPCCQLPAYLSTCPGQS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 SSLAVTKTNSDILPPQKKTKPSQKVQGRGSHGCRQQRQARQKESTLRRQERKNAALVTRM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 SSLAVTKTNSDILPPQKKTKPSQKVQGRGSHGCRQQRQARQKESTLRRQERKNAALVTRM
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE6 KAQRPEECLKHIIVVLDPVLLQMEGGGQLLGALQTMECRCVIEAQAVPCSVTWRRRAGPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 KAQRPEECLKHIIVVLDPVLLQMEGGGQLLGALQTMECRCVIEAQAVPCSVTWRRRAGPS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE6 EDREDWVEEPTVLVLLRAEAFVSMIDNGKQGSLDSTMKGKETLQGFVTDITAKTAGKALS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 EDREDWVEEPTVLVLLRAEAFVSMIDNGKQGSLDSTMKGKETLQGFVTDITAKTAGKALS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE6 LVIVDQEKCFSLELLFFDFLPCTSAQNPPRRGKQGANKQTKKQQQRQPEASIGSMVSRVD
::::::::::: ::::::::::::::::::::::::::::::::::::
NP_689 LVIVDQEKCFS-------------AQNPPRRGKQGANKQTKKQQQRQPEASIGSMVSRVD
370 380 390 400
430 440 450 460 470 480
pF1KE6 AEEALVDLQLHTEAQAQIVQSWKELADFTCAFTKAVAEAPFKKLRDETTFSFCLESDWAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 AEEALVDLQLHTEAQAQIVQSWKELADFTCAFTKAVAEAPFKKLRDETTFSFCLESDWAG
410 420 430 440 450 460
490 500 510 520 530 540
pF1KE6 GVKVDLAGRGLALVWRRQIQQLNRVSLEMASAVVNAYPSPQLLVQAYQQCFSDKERQNLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 GVKVDLAGRGLALVWRRQIQQLNRVSLEMASAVVNAYPSPQLLVQAYQQCFSDKERQNLL
470 480 490 500 510 520
550 560 570 580
pF1KE6 ADIQVRRGEGVTSTSRRIGPELSRRIYLQMTTLQPHLSLDSAD
:::::::::::::::::::::::::::::::::::::::::::
NP_689 ADIQVRRGEGVTSTSRRIGPELSRRIYLQMTTLQPHLSLDSAD
530 540 550 560 570
>>XP_016879725 (OMIM: 610885) PREDICTED: crossover junct (541 aa)
initn: 3335 init1: 2033 opt: 2036 Z-score: 1943.5 bits: 369.5 E(85289): 1.6e-101
Smith-Waterman score: 3482; 92.6% identity (92.8% similar) in 583 aa overlap (1-583:1-541)
10 20 30 40 50 60
pF1KE6 MALKKSSPSLDSGDSDSEELPTFAFLKKEPSSTKRRQPEREEKIVVVDISDCEASCPPAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MALKKSSPSLDSGDSDSEELPTFAFLKKEPSSTKRRQPEREEKIVVVDISDCEASCPPAP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 ELFSPPVPDIAETVTQTQPVRLLSSESEDEEEFIPLAQRLTCKFLTHKQLSPEDSSSPVK
::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ELFSPPVPEIAETVTQTQPVRLLSSESEDEEEFIPLAQRLTCKFLTHKQLSPEDSSSPVK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 SVLDHQNNEGASCDWKKPFPKIPEVPLHDTPERSAADNKDLILDPCCQLPAYLSTCPGQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SVLDHQNNEGASCDWKKPFPKIPEVPLHDTPERSAADNKDLILDPCCQLPAYLSTCPGQS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 SSLAVTKTNSDILPPQKKTKPSQKVQGRGSHGCRQQRQARQKESTLRRQERKNAALVTRM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SSLAVTKTNSDILPPQKKTKPSQKVQGRGSHGCRQQRQARQKESTLRRQERKNAALVTRM
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE6 KAQRPEECLKHIIVVLDPVLLQMEGGGQLLGALQTMECRCVIEAQAVPCSVTWRRRAGPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KAQRPEECLKHIIVVLDPVLLQMEGGGQLLGALQTMECRCVIEAQAVPCSVTWRRRAGPS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE6 EDREDWVEEPTVLVLLRAEAFVSMIDNGKQGSLDSTMKGKETLQGFVTDITAKTAGKALS
: ::::::::::::::::::::::::::::::
XP_016 E-----------------------------GSLDSTMKGKETLQGFVTDITAKTAGKALS
310 320 330
370 380 390 400 410 420
pF1KE6 LVIVDQEKCFSLELLFFDFLPCTSAQNPPRRGKQGANKQTKKQQQRQPEASIGSMVSRVD
::::::::::: ::::::::::::::::::::::::::::::::::::
XP_016 LVIVDQEKCFS-------------AQNPPRRGKQGANKQTKKQQQRQPEASIGSMVSRVD
340 350 360 370
430 440 450 460 470 480
pF1KE6 AEEALVDLQLHTEAQAQIVQSWKELADFTCAFTKAVAEAPFKKLRDETTFSFCLESDWAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AEEALVDLQLHTEAQAQIVQSWKELADFTCAFTKAVAEAPFKKLRDETTFSFCLESDWAG
380 390 400 410 420 430
490 500 510 520 530 540
pF1KE6 GVKVDLAGRGLALVWRRQIQQLNRVSLEMASAVVNAYPSPQLLVQAYQQCFSDKERQNLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GVKVDLAGRGLALVWRRQIQQLNRVSLEMASAVVNAYPSPQLLVQAYQQCFSDKERQNLL
440 450 460 470 480 490
550 560 570 580
pF1KE6 ADIQVRRGEGVTSTSRRIGPELSRRIYLQMTTLQPHLSLDSAD
:::::::::::::::::::::::::::::::::::::::::::
XP_016 ADIQVRRGEGVTSTSRRIGPELSRRIYLQMTTLQPHLSLDSAD
500 510 520 530 540
>>XP_011522697 (OMIM: 610885) PREDICTED: crossover junct (247 aa)
initn: 1316 init1: 1316 opt: 1326 Z-score: 1272.4 bits: 244.2 E(85289): 3.9e-64
Smith-Waterman score: 1565; 95.0% identity (95.0% similar) in 260 aa overlap (324-583:1-247)
300 310 320 330 340 350
pF1KE6 RRRAGPSEDREDWVEEPTVLVLLRAEAFVSMIDNGKQGSLDSTMKGKETLQGFVTDITAK
::::::::::::::::::::::::::::::
XP_011 MIDNGKQGSLDSTMKGKETLQGFVTDITAK
10 20 30
360 370 380 390 400 410
pF1KE6 TAGKALSLVIVDQEKCFSLELLFFDFLPCTSAQNPPRRGKQGANKQTKKQQQRQPEASIG
:::::::::::::::::: :::::::::::::::::::::::::::::
XP_011 TAGKALSLVIVDQEKCFS-------------AQNPPRRGKQGANKQTKKQQQRQPEASIG
40 50 60 70
420 430 440 450 460 470
pF1KE6 SMVSRVDAEEALVDLQLHTEAQAQIVQSWKELADFTCAFTKAVAEAPFKKLRDETTFSFC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SMVSRVDAEEALVDLQLHTEAQAQIVQSWKELADFTCAFTKAVAEAPFKKLRDETTFSFC
80 90 100 110 120 130
480 490 500 510 520 530
pF1KE6 LESDWAGGVKVDLAGRGLALVWRRQIQQLNRVSLEMASAVVNAYPSPQLLVQAYQQCFSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LESDWAGGVKVDLAGRGLALVWRRQIQQLNRVSLEMASAVVNAYPSPQLLVQAYQQCFSD
140 150 160 170 180 190
540 550 560 570 580
pF1KE6 KERQNLLADIQVRRGEGVTSTSRRIGPELSRRIYLQMTTLQPHLSLDSAD
::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KERQNLLADIQVRRGEGVTSTSRRIGPELSRRIYLQMTTLQPHLSLDSAD
200 210 220 230 240
>>XP_005257138 (OMIM: 610885) PREDICTED: crossover junct (413 aa)
initn: 1953 init1: 1316 opt: 1326 Z-score: 1269.2 bits: 244.3 E(85289): 5.9e-64
Smith-Waterman score: 2328; 70.5% identity (70.8% similar) in 583 aa overlap (1-583:1-413)
10 20 30 40 50 60
pF1KE6 MALKKSSPSLDSGDSDSEELPTFAFLKKEPSSTKRRQPEREEKIVVVDISDCEASCPPAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MALKKSSPSLDSGDSDSEELPTFAFLKKEPSSTKRRQPEREEKIVVVDISDCEASCPPAP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 ELFSPPVPDIAETVTQTQPVRLLSSESEDEEEFIPLAQRLTCKFLTHKQLSPEDSSSPVK
::::::::.::::::::::::::::::::::::::::::::
XP_005 ELFSPPVPEIAETVTQTQPVRLLSSESEDEEEFIPLAQRLT-------------------
70 80 90 100
130 140 150 160 170 180
pF1KE6 SVLDHQNNEGASCDWKKPFPKIPEVPLHDTPERSAADNKDLILDPCCQLPAYLSTCPGQS
XP_005 ------------------------------------------------------------
190 200 210 220 230 240
pF1KE6 SSLAVTKTNSDILPPQKKTKPSQKVQGRGSHGCRQQRQARQKESTLRRQERKNAALVTRM
XP_005 ------------------------------------------------------------
250 260 270 280 290 300
pF1KE6 KAQRPEECLKHIIVVLDPVLLQMEGGGQLLGALQTMECRCVIEAQAVPCSVTWRRRAGPS
.:::::::::::::::::::::::::::::::::::::::::
XP_005 ------------------LLLQMEGGGQLLGALQTMECRCVIEAQAVPCSVTWRRRAGPS
110 120 130 140
310 320 330 340 350 360
pF1KE6 EDREDWVEEPTVLVLLRAEAFVSMIDNGKQGSLDSTMKGKETLQGFVTDITAKTAGKALS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EDREDWVEEPTVLVLLRAEAFVSMIDNGKQGSLDSTMKGKETLQGFVTDITAKTAGKALS
150 160 170 180 190 200
370 380 390 400 410 420
pF1KE6 LVIVDQEKCFSLELLFFDFLPCTSAQNPPRRGKQGANKQTKKQQQRQPEASIGSMVSRVD
::::::::::: ::::::::::::::::::::::::::::::::::::
XP_005 LVIVDQEKCFS-------------AQNPPRRGKQGANKQTKKQQQRQPEASIGSMVSRVD
210 220 230 240 250
430 440 450 460 470 480
pF1KE6 AEEALVDLQLHTEAQAQIVQSWKELADFTCAFTKAVAEAPFKKLRDETTFSFCLESDWAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AEEALVDLQLHTEAQAQIVQSWKELADFTCAFTKAVAEAPFKKLRDETTFSFCLESDWAG
260 270 280 290 300 310
490 500 510 520 530 540
pF1KE6 GVKVDLAGRGLALVWRRQIQQLNRVSLEMASAVVNAYPSPQLLVQAYQQCFSDKERQNLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GVKVDLAGRGLALVWRRQIQQLNRVSLEMASAVVNAYPSPQLLVQAYQQCFSDKERQNLL
320 330 340 350 360 370
550 560 570 580
pF1KE6 ADIQVRRGEGVTSTSRRIGPELSRRIYLQMTTLQPHLSLDSAD
:::::::::::::::::::::::::::::::::::::::::::
XP_005 ADIQVRRGEGVTSTSRRIGPELSRRIYLQMTTLQPHLSLDSAD
380 390 400 410
>>XP_016878515 (OMIM: 610886) PREDICTED: probable crosso (348 aa)
initn: 598 init1: 413 opt: 508 Z-score: 491.6 bits: 100.2 E(85289): 1.2e-20
Smith-Waterman score: 540; 33.5% identity (56.2% similar) in 388 aa overlap (194-580:28-345)
170 180 190 200 210 220
pF1KE6 DPCCQLPAYLSTCPGQSSSLAVTKTNSDILPPQKKTKPSQKVQGRGSHGCRQQRQARQKE
:: . . :. .. :: . :: ..
XP_016 MARVGPGRAGVSCQGRGRGRGGSGQRRPPTWEISDSDAEDSAGS-----EAAARARD
10 20 30 40 50
230 240 250 260 270 280
pF1KE6 STLRRQERKNAALVTRMKAQRPEECLKHIIVVLDPVLLQMEGGGQLLGALQTMECRCVIE
. ::. :: . :. :::. ::.. : .: ..:. :. :. ::... :.: ::
XP_016 PA---GERRAAAEALRL--LRPEQVLKRLAVCVDTAILEDAGADVLMEALEALGCECRIE
60 70 80 90 100
290 300 310 320 330 340
pF1KE6 AQAVPCSVTWRRRAGPSEDREDWVEEPTVLVLLRAEAFVSMIDNGKQGSLDSTMKGKETL
: :. : : :.: .: ...:
XP_016 PQRPARSLRWTR-ASP---------DPC----------------------PRSISGPTHW
110 120 130
350 360 370 380 390 400
pF1KE6 QGFVTDITAKTAGKALSLVIVDQEKCFSLELLFFDFLPCTSAQNPPRRGKQGANKQTKKQ
... : :: :... .: .: ..: ... : :
XP_016 VPWISPET--TARPHLAVIGLDA------------YL----------WSRQHVSRGT--Q
140 150 160
410 420 430 440 450 460
pF1KE6 QQRQPE-ASIGSMVSRVDAEEALVDLQLHTEAQAQIVQSWKELADFTCAFTKAVAEAPFK
: ..:. :. :: ..::::: ::: .. .. .: ::.::. .:: :::.:. :.:
XP_016 QPESPKVAGAEVAVSWPEVEEALVLLQLWANLDVLLVASWQELSRHVCAVTKALAQYPLK
170 180 190 200 210 220
470 480 490 500 510 520
pF1KE6 KLRDETTFSFCLESDWAGGVKVDLAGRGLALVWRRQIQQLNRVSLEMASAVVNAYPSPQL
. :. .:::: . ::.: : : :: .:::::.:..::: .:.:::.:.:::.:
XP_016 QYRESQAFSFCTAGRWAAGEPVARDGAGLQAAWRRQIRQFSRVSPAVADAVVTAFPSPRL
230 240 250 260 270 280
530 540 550 560 570 580
pF1KE6 LVQAYQQCFSDKERQNLLADIQVRRGEGVTSTSRRIGPELSRRIYLQMTTLQPHLSLDSA
: :: . : ...::..::::. : .:: . ::.::.::::: : .:: .: : ::
XP_016 LQQALEACSTERERMGLLADLPVPPSEG--GRPRRVGPDLSRRICLFLTTANPDLLLDLG
290 300 310 320 330 340
pF1KE6 D
XP_016 S
>>XP_016878514 (OMIM: 610886) PREDICTED: probable crosso (351 aa)
initn: 528 init1: 413 opt: 508 Z-score: 491.5 bits: 100.2 E(85289): 1.2e-20
Smith-Waterman score: 546; 36.7% identity (60.2% similar) in 332 aa overlap (257-580:52-348)
230 240 250 260 270 280
pF1KE6 RRQERKNAALVTRMKAQRPEECLKHIIVVLDPV-LLQMEGGGQLLGALQTMECRCVIEAQ
::. .:. :. :. ::... :.: :: :
XP_016 GSGQRRPPTWEISDSDAEDSAGSEAAARARDPAAILEDAGADVLMEALEALGCECRIEPQ
30 40 50 60 70 80
290 300 310 320 330
pF1KE6 AVPCSVTWRRRAGP-----SEDREDWVE-EPTVLVLLRAEAFVSMIDNGKQGSLDSTMKG
:. : : :.: : : :. : .:.::. : :.. . . : ..:
XP_016 RPARSLRWTR-ASPDPCPRSLPPEVWAAGEQELLLLLEPEEFLQGVATLTQ------ISG
90 100 110 120 130
340 350 360 370 380 390
pF1KE6 KETLQGFVTDITAKTAGKALSLVIVDQEKCFSLELLFFDFLPCTSAQNPPRRGKQGANKQ
... : :: :... .: .: ..: ...
XP_016 PTHWVPWISPET--TARPHLAVIGLDA------------YL----------WSRQHVSRG
140 150 160 170
400 410 420 430 440 450
pF1KE6 TKKQQQRQPE-ASIGSMVSRVDAEEALVDLQLHTEAQAQIVQSWKELADFTCAFTKAVAE
: :: ..:. :. :: ..::::: ::: .. .. .: ::.::. .:: :::.:.
XP_016 T--QQPESPKVAGAEVAVSWPEVEEALVLLQLWANLDVLLVASWQELSRHVCAVTKALAQ
180 190 200 210 220
460 470 480 490 500 510
pF1KE6 APFKKLRDETTFSFCLESDWAGGVKVDLAGRGLALVWRRQIQQLNRVSLEMASAVVNAYP
:.:. :. .:::: . ::.: : : :: .:::::.:..::: .:.:::.:.:
XP_016 YPLKQYRESQAFSFCTAGRWAAGEPVARDGAGLQAAWRRQIRQFSRVSPAVADAVVTAFP
230 240 250 260 270 280
520 530 540 550 560 570
pF1KE6 SPQLLVQAYQQCFSDKERQNLLADIQVRRGEGVTSTSRRIGPELSRRIYLQMTTLQPHLS
::.:: :: . : ...::..::::. : .:: . ::.::.::::: : .:: .: :
XP_016 SPRLLQQALEACSTERERMGLLADLPVPPSEG--GRPRRVGPDLSRRICLFLTTANPDLL
290 300 310 320 330 340
580
pF1KE6 LDSAD
::
XP_016 LDLGS
350
>>NP_001244299 (OMIM: 610886) probable crossover junctio (379 aa)
initn: 598 init1: 413 opt: 508 Z-score: 491.0 bits: 100.2 E(85289): 1.3e-20
Smith-Waterman score: 606; 35.3% identity (59.1% similar) in 394 aa overlap (194-580:28-376)
170 180 190 200 210 220
pF1KE6 DPCCQLPAYLSTCPGQSSSLAVTKTNSDILPPQKKTKPSQKVQGRGSHGCRQQRQARQKE
:: . . :. .. :: . :: ..
NP_001 MARVGPGRAGVSCQGRGRGRGGSGQRRPPTWEISDSDAEDSAGS-----EAAARARD
10 20 30 40 50
230 240 250 260 270 280
pF1KE6 STLRRQERKNAALVTRMKAQRPEECLKHIIVVLDPVLLQMEGGGQLLGALQTMECRCVIE
. ::. :: . :. :::. ::.. : .: ..:. :. :. ::... :.: ::
NP_001 PA---GERRAAAEALRL--LRPEQVLKRLAVCVDTAILEDAGADVLMEALEALGCECRIE
60 70 80 90 100
290 300 310 320 330
pF1KE6 AQAVPCSVTWRRRAGP-----SEDREDWVE-EPTVLVLLRAEAFVSMIDNGKQGSLDSTM
: :. : : :.: : : :. : .:.::. : :.. . . : .
NP_001 PQRPARSLRWTR-ASPDPCPRSLPPEVWAAGEQELLLLLEPEEFLQGVATLTQ------I
110 120 130 140 150 160
340 350 360 370 380 390
pF1KE6 KGKETLQGFVTDITAKTAGKALSLVIVDQEKCFSLELLFFDFLPCTSAQNPPRRGKQGAN
.: ... : :: :... .: .: ..: ..
NP_001 SGPTHWVPWISPET--TARPHLAVIGLDA------------YL----------WSRQHVS
170 180 190
400 410 420 430 440 450
pF1KE6 KQTKKQQQRQPE-ASIGSMVSRVDAEEALVDLQLHTEAQAQIVQSWKELADFTCAFTKAV
. : :: ..:. :. :: ..::::: ::: .. .. .: ::.::. .:: :::.
NP_001 RGT--QQPESPKVAGAEVAVSWPEVEEALVLLQLWANLDVLLVASWQELSRHVCAVTKAL
200 210 220 230 240 250
460 470 480 490 500 510
pF1KE6 AEAPFKKLRDETTFSFCLESDWAGGVKVDLAGRGLALVWRRQIQQLNRVSLEMASAVVNA
:. :.:. :. .:::: . ::.: : : :: .:::::.:..::: .:.:::.:
NP_001 AQYPLKQYRESQAFSFCTAGRWAAGEPVARDGAGLQAAWRRQIRQFSRVSPAVADAVVTA
260 270 280 290 300 310
520 530 540 550 560 570
pF1KE6 YPSPQLLVQAYQQCFSDKERQNLLADIQVRRGEGVTSTSRRIGPELSRRIYLQMTTLQPH
.:::.:: :: . : ...::..::::. : .:: . ::.::.::::: : .:: .:
NP_001 FPSPRLLQQALEACSTERERMGLLADLPVPPSEG--GRPRRVGPDLSRRICLFLTTANPD
320 330 340 350 360 370
580
pF1KE6 LSLDSAD
: ::
NP_001 LLLDLGS
583 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 16:05:52 2016 done: Tue Nov 8 16:05:53 2016
Total Scan time: 9.080 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]