Result of FASTA (omim) for
pFN21AE6749
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6749, 542 aa
1>>>pF1KE6749 542 - 542 aa - 542 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.4410+/-0.000422; mu= -6.2981+/- 0.026
mean_var=243.8474+/-50.247, 0's: 0 Z-trim(118.5): 59 B-trim: 0 in 0/54
Lambda= 0.082133
statistics sampled from 31478 (31537) to 31478 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.721), E-opt: 0.2 (0.37), width: 16
Scan time: 9.300
The best scores are: opt bits E(85289)
NP_008930 (OMIM: 605198) non-canonical poly(A) RNA ( 542) 3609 441.0 4.3e-123
XP_005248291 (OMIM: 605198) PREDICTED: non-canonic ( 792) 3609 441.1 6e-123
NP_001165276 (OMIM: 605198) non-canonical poly(A) ( 541) 3590 438.8 2.1e-122
XP_016864477 (OMIM: 605198) PREDICTED: non-canonic ( 533) 3542 433.1 1e-120
XP_016864478 (OMIM: 605198) PREDICTED: non-canonic ( 533) 3542 433.1 1e-120
XP_011512247 (OMIM: 605198) PREDICTED: non-canonic ( 499) 2564 317.2 7.6e-86
NP_001165277 (OMIM: 605198) non-canonical poly(A) ( 362) 2444 302.9 1.1e-81
XP_016864479 (OMIM: 605198) PREDICTED: non-canonic ( 362) 2444 302.9 1.1e-81
XP_011521580 (OMIM: 605540) PREDICTED: non-canonic ( 527) 1648 208.7 3.7e-53
XP_005256150 (OMIM: 605540) PREDICTED: non-canonic ( 673) 1648 208.7 4.6e-53
XP_016879044 (OMIM: 605540) PREDICTED: non-canonic ( 693) 1648 208.7 4.7e-53
NP_001035374 (OMIM: 605540) non-canonical poly(A) ( 698) 1648 208.7 4.8e-53
XP_011521577 (OMIM: 605540) PREDICTED: non-canonic ( 699) 1648 208.7 4.8e-53
XP_005256149 (OMIM: 605540) PREDICTED: non-canonic ( 713) 1648 208.7 4.9e-53
NP_001035375 (OMIM: 605540) non-canonical poly(A) ( 651) 1557 197.9 7.9e-50
XP_011521578 (OMIM: 605540) PREDICTED: non-canonic ( 652) 1557 197.9 7.9e-50
>>NP_008930 (OMIM: 605198) non-canonical poly(A) RNA pol (542 aa)
initn: 3609 init1: 3609 opt: 3609 Z-score: 2330.8 bits: 441.0 E(85289): 4.3e-123
Smith-Waterman score: 3609; 100.0% identity (100.0% similar) in 542 aa overlap (1-542:1-542)
10 20 30 40 50 60
pF1KE6 MSPCPEEAAMRREVVKRIETVVKDLWPTADVQIFGSFSTGLYLPTSDIDLVVFGKWERPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 MSPCPEEAAMRREVVKRIETVVKDLWPTADVQIFGSFSTGLYLPTSDIDLVVFGKWERPP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 LQLLEQALRKHNVAEPCSIKVLDKATVPIIKLTDQETEVKVDISFNMETGVRAAEFIKNY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 LQLLEQALRKHNVAEPCSIKVLDKATVPIIKLTDQETEVKVDISFNMETGVRAAEFIKNY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 MKKYSLLPYLILVLKQFLLQRDLNEVFTGGISSYSLILMAISFLQLHPRIDARRADENLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 MKKYSLLPYLILVLKQFLLQRDLNEVFTGGISSYSLILMAISFLQLHPRIDARRADENLG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 MLLVEFFELYGRNFNYLKTGIRIKEGGAYIAKEEIMKAMTSGYRPSMLCIEDPLLPGNDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 MLLVEFFELYGRNFNYLKTGIRIKEGGAYIAKEEIMKAMTSGYRPSMLCIEDPLLPGNDV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE6 GRSSYGAMQVKQVFDYAYIVLSHAVSPLARSYPNRDAESTLGRIIKVTQEVIDYRRWIKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 GRSSYGAMQVKQVFDYAYIVLSHAVSPLARSYPNRDAESTLGRIIKVTQEVIDYRRWIKE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE6 KWGSKAHPSPGMDSRIKIKERIATCNGEQTQNREPESPYGQRLTLSLSSPQLLSSGSSAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 KWGSKAHPSPGMDSRIKIKERIATCNGEQTQNREPESPYGQRLTLSLSSPQLLSSGSSAS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE6 SVSSLSGSDVDSDTPPCTTPSVYQFSLQAPAPLMAGLPTALPMPSGKPQPTTSRTLIMTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 SVSSLSGSDVDSDTPPCTTPSVYQFSLQAPAPLMAGLPTALPMPSGKPQPTTSRTLIMTT
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE6 NNQTRFTIPPPTLGVAPVPCRQAGVEGTASLKAVHHMSSPAIPSASPNPLSSPHLYHKQH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 NNQTRFTIPPPTLGVAPVPCRQAGVEGTASLKAVHHMSSPAIPSASPNPLSSPHLYHKQH
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE6 NGMKLSMKGSHGHTQGGGYSSVGSGGVRPPVGNRGHHQYNRTGWRRKKHTHTRDSLPVSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 NGMKLSMKGSHGHTQGGGYSSVGSGGVRPPVGNRGHHQYNRTGWRRKKHTHTRDSLPVSL
490 500 510 520 530 540
pF1KE6 SR
::
NP_008 SR
>>XP_005248291 (OMIM: 605198) PREDICTED: non-canonical p (792 aa)
initn: 3609 init1: 3609 opt: 3609 Z-score: 2328.3 bits: 441.1 E(85289): 6e-123
Smith-Waterman score: 3609; 100.0% identity (100.0% similar) in 542 aa overlap (1-542:251-792)
10 20 30
pF1KE6 MSPCPEEAAMRREVVKRIETVVKDLWPTAD
::::::::::::::::::::::::::::::
XP_005 APRPGTPWKSRAYSPGIQGLHEEIIDFYNFMSPCPEEAAMRREVVKRIETVVKDLWPTAD
230 240 250 260 270 280
40 50 60 70 80 90
pF1KE6 VQIFGSFSTGLYLPTSDIDLVVFGKWERPPLQLLEQALRKHNVAEPCSIKVLDKATVPII
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VQIFGSFSTGLYLPTSDIDLVVFGKWERPPLQLLEQALRKHNVAEPCSIKVLDKATVPII
290 300 310 320 330 340
100 110 120 130 140 150
pF1KE6 KLTDQETEVKVDISFNMETGVRAAEFIKNYMKKYSLLPYLILVLKQFLLQRDLNEVFTGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KLTDQETEVKVDISFNMETGVRAAEFIKNYMKKYSLLPYLILVLKQFLLQRDLNEVFTGG
350 360 370 380 390 400
160 170 180 190 200 210
pF1KE6 ISSYSLILMAISFLQLHPRIDARRADENLGMLLVEFFELYGRNFNYLKTGIRIKEGGAYI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ISSYSLILMAISFLQLHPRIDARRADENLGMLLVEFFELYGRNFNYLKTGIRIKEGGAYI
410 420 430 440 450 460
220 230 240 250 260 270
pF1KE6 AKEEIMKAMTSGYRPSMLCIEDPLLPGNDVGRSSYGAMQVKQVFDYAYIVLSHAVSPLAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AKEEIMKAMTSGYRPSMLCIEDPLLPGNDVGRSSYGAMQVKQVFDYAYIVLSHAVSPLAR
470 480 490 500 510 520
280 290 300 310 320 330
pF1KE6 SYPNRDAESTLGRIIKVTQEVIDYRRWIKEKWGSKAHPSPGMDSRIKIKERIATCNGEQT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SYPNRDAESTLGRIIKVTQEVIDYRRWIKEKWGSKAHPSPGMDSRIKIKERIATCNGEQT
530 540 550 560 570 580
340 350 360 370 380 390
pF1KE6 QNREPESPYGQRLTLSLSSPQLLSSGSSASSVSSLSGSDVDSDTPPCTTPSVYQFSLQAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QNREPESPYGQRLTLSLSSPQLLSSGSSASSVSSLSGSDVDSDTPPCTTPSVYQFSLQAP
590 600 610 620 630 640
400 410 420 430 440 450
pF1KE6 APLMAGLPTALPMPSGKPQPTTSRTLIMTTNNQTRFTIPPPTLGVAPVPCRQAGVEGTAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 APLMAGLPTALPMPSGKPQPTTSRTLIMTTNNQTRFTIPPPTLGVAPVPCRQAGVEGTAS
650 660 670 680 690 700
460 470 480 490 500 510
pF1KE6 LKAVHHMSSPAIPSASPNPLSSPHLYHKQHNGMKLSMKGSHGHTQGGGYSSVGSGGVRPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LKAVHHMSSPAIPSASPNPLSSPHLYHKQHNGMKLSMKGSHGHTQGGGYSSVGSGGVRPP
710 720 730 740 750 760
520 530 540
pF1KE6 VGNRGHHQYNRTGWRRKKHTHTRDSLPVSLSR
::::::::::::::::::::::::::::::::
XP_005 VGNRGHHQYNRTGWRRKKHTHTRDSLPVSLSR
770 780 790
>>NP_001165276 (OMIM: 605198) non-canonical poly(A) RNA (541 aa)
initn: 3152 init1: 3152 opt: 3590 Z-score: 2318.7 bits: 438.8 E(85289): 2.1e-122
Smith-Waterman score: 3590; 99.8% identity (99.8% similar) in 542 aa overlap (1-542:1-541)
10 20 30 40 50 60
pF1KE6 MSPCPEEAAMRREVVKRIETVVKDLWPTADVQIFGSFSTGLYLPTSDIDLVVFGKWERPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSPCPEEAAMRREVVKRIETVVKDLWPTADVQIFGSFSTGLYLPTSDIDLVVFGKWERPP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 LQLLEQALRKHNVAEPCSIKVLDKATVPIIKLTDQETEVKVDISFNMETGVRAAEFIKNY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LQLLEQALRKHNVAEPCSIKVLDKATVPIIKLTDQETEVKVDISFNMETGVRAAEFIKNY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 MKKYSLLPYLILVLKQFLLQRDLNEVFTGGISSYSLILMAISFLQLHPRIDARRADENLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKKYSLLPYLILVLKQFLLQRDLNEVFTGGISSYSLILMAISFLQLHPRIDARRADENLG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 MLLVEFFELYGRNFNYLKTGIRIKEGGAYIAKEEIMKAMTSGYRPSMLCIEDPLLPGNDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLLVEFFELYGRNFNYLKTGIRIKEGGAYIAKEEIMKAMTSGYRPSMLCIEDPLLPGNDV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE6 GRSSYGAMQVKQVFDYAYIVLSHAVSPLARSYPNRDAESTLGRIIKVTQEVIDYRRWIKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GRSSYGAMQVKQVFDYAYIVLSHAVSPLARSYPNRDAESTLGRIIKVTQEVIDYRRWIKE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE6 KWGSKAHPSPGMDSRIKIKERIATCNGEQTQNREPESPYGQRLTLSLSSPQLLSSGSSAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KWGSKAHPSPGMDSRIKIKERIATCNGEQTQNREPESPYGQRLTLSLSSPQLLSSGSSAS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE6 SVSSLSGSDVDSDTPPCTTPSVYQFSLQAPAPLMAGLPTALPMPSGKPQPTTSRTLIMTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SVSSLSGSDVDSDTPPCTTPSVYQFSLQAPAPLMAGLPTALPMPSGKPQPTTSRTLIMTT
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE6 NNQTRFTIPPPTLGVAPVPCRQAGVEGTASLKAVHHMSSPAIPSASPNPLSSPHLYHKQH
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :
NP_001 NNQTRFTIPPPTLGVAPVPCRQAGVEGTASLKAVHHMSSPAIPSASPNPLSSPHLYHK-H
430 440 450 460 470
490 500 510 520 530 540
pF1KE6 NGMKLSMKGSHGHTQGGGYSSVGSGGVRPPVGNRGHHQYNRTGWRRKKHTHTRDSLPVSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NGMKLSMKGSHGHTQGGGYSSVGSGGVRPPVGNRGHHQYNRTGWRRKKHTHTRDSLPVSL
480 490 500 510 520 530
pF1KE6 SR
::
NP_001 SR
540
>>XP_016864477 (OMIM: 605198) PREDICTED: non-canonical p (533 aa)
initn: 3542 init1: 3542 opt: 3542 Z-score: 2288.1 bits: 433.1 E(85289): 1e-120
Smith-Waterman score: 3542; 100.0% identity (100.0% similar) in 533 aa overlap (10-542:1-533)
10 20 30 40 50 60
pF1KE6 MSPCPEEAAMRREVVKRIETVVKDLWPTADVQIFGSFSTGLYLPTSDIDLVVFGKWERPP
:::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MRREVVKRIETVVKDLWPTADVQIFGSFSTGLYLPTSDIDLVVFGKWERPP
10 20 30 40 50
70 80 90 100 110 120
pF1KE6 LQLLEQALRKHNVAEPCSIKVLDKATVPIIKLTDQETEVKVDISFNMETGVRAAEFIKNY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LQLLEQALRKHNVAEPCSIKVLDKATVPIIKLTDQETEVKVDISFNMETGVRAAEFIKNY
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE6 MKKYSLLPYLILVLKQFLLQRDLNEVFTGGISSYSLILMAISFLQLHPRIDARRADENLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MKKYSLLPYLILVLKQFLLQRDLNEVFTGGISSYSLILMAISFLQLHPRIDARRADENLG
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE6 MLLVEFFELYGRNFNYLKTGIRIKEGGAYIAKEEIMKAMTSGYRPSMLCIEDPLLPGNDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MLLVEFFELYGRNFNYLKTGIRIKEGGAYIAKEEIMKAMTSGYRPSMLCIEDPLLPGNDV
180 190 200 210 220 230
250 260 270 280 290 300
pF1KE6 GRSSYGAMQVKQVFDYAYIVLSHAVSPLARSYPNRDAESTLGRIIKVTQEVIDYRRWIKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GRSSYGAMQVKQVFDYAYIVLSHAVSPLARSYPNRDAESTLGRIIKVTQEVIDYRRWIKE
240 250 260 270 280 290
310 320 330 340 350 360
pF1KE6 KWGSKAHPSPGMDSRIKIKERIATCNGEQTQNREPESPYGQRLTLSLSSPQLLSSGSSAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KWGSKAHPSPGMDSRIKIKERIATCNGEQTQNREPESPYGQRLTLSLSSPQLLSSGSSAS
300 310 320 330 340 350
370 380 390 400 410 420
pF1KE6 SVSSLSGSDVDSDTPPCTTPSVYQFSLQAPAPLMAGLPTALPMPSGKPQPTTSRTLIMTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SVSSLSGSDVDSDTPPCTTPSVYQFSLQAPAPLMAGLPTALPMPSGKPQPTTSRTLIMTT
360 370 380 390 400 410
430 440 450 460 470 480
pF1KE6 NNQTRFTIPPPTLGVAPVPCRQAGVEGTASLKAVHHMSSPAIPSASPNPLSSPHLYHKQH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NNQTRFTIPPPTLGVAPVPCRQAGVEGTASLKAVHHMSSPAIPSASPNPLSSPHLYHKQH
420 430 440 450 460 470
490 500 510 520 530 540
pF1KE6 NGMKLSMKGSHGHTQGGGYSSVGSGGVRPPVGNRGHHQYNRTGWRRKKHTHTRDSLPVSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NGMKLSMKGSHGHTQGGGYSSVGSGGVRPPVGNRGHHQYNRTGWRRKKHTHTRDSLPVSL
480 490 500 510 520 530
pF1KE6 SR
::
XP_016 SR
>>XP_016864478 (OMIM: 605198) PREDICTED: non-canonical p (533 aa)
initn: 3542 init1: 3542 opt: 3542 Z-score: 2288.1 bits: 433.1 E(85289): 1e-120
Smith-Waterman score: 3542; 100.0% identity (100.0% similar) in 533 aa overlap (10-542:1-533)
10 20 30 40 50 60
pF1KE6 MSPCPEEAAMRREVVKRIETVVKDLWPTADVQIFGSFSTGLYLPTSDIDLVVFGKWERPP
:::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MRREVVKRIETVVKDLWPTADVQIFGSFSTGLYLPTSDIDLVVFGKWERPP
10 20 30 40 50
70 80 90 100 110 120
pF1KE6 LQLLEQALRKHNVAEPCSIKVLDKATVPIIKLTDQETEVKVDISFNMETGVRAAEFIKNY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LQLLEQALRKHNVAEPCSIKVLDKATVPIIKLTDQETEVKVDISFNMETGVRAAEFIKNY
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE6 MKKYSLLPYLILVLKQFLLQRDLNEVFTGGISSYSLILMAISFLQLHPRIDARRADENLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MKKYSLLPYLILVLKQFLLQRDLNEVFTGGISSYSLILMAISFLQLHPRIDARRADENLG
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE6 MLLVEFFELYGRNFNYLKTGIRIKEGGAYIAKEEIMKAMTSGYRPSMLCIEDPLLPGNDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MLLVEFFELYGRNFNYLKTGIRIKEGGAYIAKEEIMKAMTSGYRPSMLCIEDPLLPGNDV
180 190 200 210 220 230
250 260 270 280 290 300
pF1KE6 GRSSYGAMQVKQVFDYAYIVLSHAVSPLARSYPNRDAESTLGRIIKVTQEVIDYRRWIKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GRSSYGAMQVKQVFDYAYIVLSHAVSPLARSYPNRDAESTLGRIIKVTQEVIDYRRWIKE
240 250 260 270 280 290
310 320 330 340 350 360
pF1KE6 KWGSKAHPSPGMDSRIKIKERIATCNGEQTQNREPESPYGQRLTLSLSSPQLLSSGSSAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KWGSKAHPSPGMDSRIKIKERIATCNGEQTQNREPESPYGQRLTLSLSSPQLLSSGSSAS
300 310 320 330 340 350
370 380 390 400 410 420
pF1KE6 SVSSLSGSDVDSDTPPCTTPSVYQFSLQAPAPLMAGLPTALPMPSGKPQPTTSRTLIMTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SVSSLSGSDVDSDTPPCTTPSVYQFSLQAPAPLMAGLPTALPMPSGKPQPTTSRTLIMTT
360 370 380 390 400 410
430 440 450 460 470 480
pF1KE6 NNQTRFTIPPPTLGVAPVPCRQAGVEGTASLKAVHHMSSPAIPSASPNPLSSPHLYHKQH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NNQTRFTIPPPTLGVAPVPCRQAGVEGTASLKAVHHMSSPAIPSASPNPLSSPHLYHKQH
420 430 440 450 460 470
490 500 510 520 530 540
pF1KE6 NGMKLSMKGSHGHTQGGGYSSVGSGGVRPPVGNRGHHQYNRTGWRRKKHTHTRDSLPVSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NGMKLSMKGSHGHTQGGGYSSVGSGGVRPPVGNRGHHQYNRTGWRRKKHTHTRDSLPVSL
480 490 500 510 520 530
pF1KE6 SR
::
XP_016 SR
>>XP_011512247 (OMIM: 605198) PREDICTED: non-canonical p (499 aa)
initn: 2557 init1: 2557 opt: 2564 Z-score: 1662.2 bits: 317.2 E(85289): 7.6e-86
Smith-Waterman score: 3251; 92.1% identity (92.1% similar) in 542 aa overlap (1-542:1-499)
10 20 30 40 50 60
pF1KE6 MSPCPEEAAMRREVVKRIETVVKDLWPTADVQIFGSFSTGLYLPTSDIDLVVFGKWERPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSPCPEEAAMRREVVKRIETVVKDLWPTADVQIFGSFSTGLYLPTSDIDLVVFGKWERPP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 LQLLEQALRKHNVAEPCSIKVLDKATVPIIKLTDQETEVKVDISFNMETGVRAAEFIKNY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LQLLEQALRKHNVAEPCSIKVLDKATVPIIKLTDQETEVKVDISFNMETGVRAAEFIKNY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 MKKYSLLPYLILVLKQFLLQRDLNEVFTGGISSYSLILMAISFLQLHPRIDARRADENLG
:: :::::::::::::::
XP_011 MK-------------------------------------------LHPRIDARRADENLG
130
190 200 210 220 230 240
pF1KE6 MLLVEFFELYGRNFNYLKTGIRIKEGGAYIAKEEIMKAMTSGYRPSMLCIEDPLLPGNDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MLLVEFFELYGRNFNYLKTGIRIKEGGAYIAKEEIMKAMTSGYRPSMLCIEDPLLPGNDV
140 150 160 170 180 190
250 260 270 280 290 300
pF1KE6 GRSSYGAMQVKQVFDYAYIVLSHAVSPLARSYPNRDAESTLGRIIKVTQEVIDYRRWIKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GRSSYGAMQVKQVFDYAYIVLSHAVSPLARSYPNRDAESTLGRIIKVTQEVIDYRRWIKE
200 210 220 230 240 250
310 320 330 340 350 360
pF1KE6 KWGSKAHPSPGMDSRIKIKERIATCNGEQTQNREPESPYGQRLTLSLSSPQLLSSGSSAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KWGSKAHPSPGMDSRIKIKERIATCNGEQTQNREPESPYGQRLTLSLSSPQLLSSGSSAS
260 270 280 290 300 310
370 380 390 400 410 420
pF1KE6 SVSSLSGSDVDSDTPPCTTPSVYQFSLQAPAPLMAGLPTALPMPSGKPQPTTSRTLIMTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SVSSLSGSDVDSDTPPCTTPSVYQFSLQAPAPLMAGLPTALPMPSGKPQPTTSRTLIMTT
320 330 340 350 360 370
430 440 450 460 470 480
pF1KE6 NNQTRFTIPPPTLGVAPVPCRQAGVEGTASLKAVHHMSSPAIPSASPNPLSSPHLYHKQH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NNQTRFTIPPPTLGVAPVPCRQAGVEGTASLKAVHHMSSPAIPSASPNPLSSPHLYHKQH
380 390 400 410 420 430
490 500 510 520 530 540
pF1KE6 NGMKLSMKGSHGHTQGGGYSSVGSGGVRPPVGNRGHHQYNRTGWRRKKHTHTRDSLPVSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NGMKLSMKGSHGHTQGGGYSSVGSGGVRPPVGNRGHHQYNRTGWRRKKHTHTRDSLPVSL
440 450 460 470 480 490
pF1KE6 SR
::
XP_011 SR
>>NP_001165277 (OMIM: 605198) non-canonical poly(A) RNA (362 aa)
initn: 2444 init1: 2444 opt: 2444 Z-score: 1587.5 bits: 302.9 E(85289): 1.1e-81
Smith-Waterman score: 2444; 100.0% identity (100.0% similar) in 362 aa overlap (181-542:1-362)
160 170 180 190 200 210
pF1KE6 ISSYSLILMAISFLQLHPRIDARRADENLGMLLVEFFELYGRNFNYLKTGIRIKEGGAYI
::::::::::::::::::::::::::::::
NP_001 MLLVEFFELYGRNFNYLKTGIRIKEGGAYI
10 20 30
220 230 240 250 260 270
pF1KE6 AKEEIMKAMTSGYRPSMLCIEDPLLPGNDVGRSSYGAMQVKQVFDYAYIVLSHAVSPLAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AKEEIMKAMTSGYRPSMLCIEDPLLPGNDVGRSSYGAMQVKQVFDYAYIVLSHAVSPLAR
40 50 60 70 80 90
280 290 300 310 320 330
pF1KE6 SYPNRDAESTLGRIIKVTQEVIDYRRWIKEKWGSKAHPSPGMDSRIKIKERIATCNGEQT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SYPNRDAESTLGRIIKVTQEVIDYRRWIKEKWGSKAHPSPGMDSRIKIKERIATCNGEQT
100 110 120 130 140 150
340 350 360 370 380 390
pF1KE6 QNREPESPYGQRLTLSLSSPQLLSSGSSASSVSSLSGSDVDSDTPPCTTPSVYQFSLQAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QNREPESPYGQRLTLSLSSPQLLSSGSSASSVSSLSGSDVDSDTPPCTTPSVYQFSLQAP
160 170 180 190 200 210
400 410 420 430 440 450
pF1KE6 APLMAGLPTALPMPSGKPQPTTSRTLIMTTNNQTRFTIPPPTLGVAPVPCRQAGVEGTAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 APLMAGLPTALPMPSGKPQPTTSRTLIMTTNNQTRFTIPPPTLGVAPVPCRQAGVEGTAS
220 230 240 250 260 270
460 470 480 490 500 510
pF1KE6 LKAVHHMSSPAIPSASPNPLSSPHLYHKQHNGMKLSMKGSHGHTQGGGYSSVGSGGVRPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LKAVHHMSSPAIPSASPNPLSSPHLYHKQHNGMKLSMKGSHGHTQGGGYSSVGSGGVRPP
280 290 300 310 320 330
520 530 540
pF1KE6 VGNRGHHQYNRTGWRRKKHTHTRDSLPVSLSR
::::::::::::::::::::::::::::::::
NP_001 VGNRGHHQYNRTGWRRKKHTHTRDSLPVSLSR
340 350 360
>>XP_016864479 (OMIM: 605198) PREDICTED: non-canonical p (362 aa)
initn: 2444 init1: 2444 opt: 2444 Z-score: 1587.5 bits: 302.9 E(85289): 1.1e-81
Smith-Waterman score: 2444; 100.0% identity (100.0% similar) in 362 aa overlap (181-542:1-362)
160 170 180 190 200 210
pF1KE6 ISSYSLILMAISFLQLHPRIDARRADENLGMLLVEFFELYGRNFNYLKTGIRIKEGGAYI
::::::::::::::::::::::::::::::
XP_016 MLLVEFFELYGRNFNYLKTGIRIKEGGAYI
10 20 30
220 230 240 250 260 270
pF1KE6 AKEEIMKAMTSGYRPSMLCIEDPLLPGNDVGRSSYGAMQVKQVFDYAYIVLSHAVSPLAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AKEEIMKAMTSGYRPSMLCIEDPLLPGNDVGRSSYGAMQVKQVFDYAYIVLSHAVSPLAR
40 50 60 70 80 90
280 290 300 310 320 330
pF1KE6 SYPNRDAESTLGRIIKVTQEVIDYRRWIKEKWGSKAHPSPGMDSRIKIKERIATCNGEQT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SYPNRDAESTLGRIIKVTQEVIDYRRWIKEKWGSKAHPSPGMDSRIKIKERIATCNGEQT
100 110 120 130 140 150
340 350 360 370 380 390
pF1KE6 QNREPESPYGQRLTLSLSSPQLLSSGSSASSVSSLSGSDVDSDTPPCTTPSVYQFSLQAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QNREPESPYGQRLTLSLSSPQLLSSGSSASSVSSLSGSDVDSDTPPCTTPSVYQFSLQAP
160 170 180 190 200 210
400 410 420 430 440 450
pF1KE6 APLMAGLPTALPMPSGKPQPTTSRTLIMTTNNQTRFTIPPPTLGVAPVPCRQAGVEGTAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 APLMAGLPTALPMPSGKPQPTTSRTLIMTTNNQTRFTIPPPTLGVAPVPCRQAGVEGTAS
220 230 240 250 260 270
460 470 480 490 500 510
pF1KE6 LKAVHHMSSPAIPSASPNPLSSPHLYHKQHNGMKLSMKGSHGHTQGGGYSSVGSGGVRPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LKAVHHMSSPAIPSASPNPLSSPHLYHKQHNGMKLSMKGSHGHTQGGGYSSVGSGGVRPP
280 290 300 310 320 330
520 530 540
pF1KE6 VGNRGHHQYNRTGWRRKKHTHTRDSLPVSLSR
::::::::::::::::::::::::::::::::
XP_016 VGNRGHHQYNRTGWRRKKHTHTRDSLPVSLSR
340 350 360
>>XP_011521580 (OMIM: 605540) PREDICTED: non-canonical p (527 aa)
initn: 1666 init1: 1554 opt: 1648 Z-score: 1075.2 bits: 208.7 E(85289): 3.7e-53
Smith-Waterman score: 1648; 66.1% identity (84.5% similar) in 386 aa overlap (1-380:39-424)
10 20 30
pF1KE6 MSPCPEEAAMRREVVKRIETVVKDLWPTAD
::: ::: :: :::.:::.:.:.:::.::
XP_011 PGKPRRRSRARLRSSRTPSLHEEISDFYEYMSPRPEEEKMRMEVVNRIESVIKELWPSAD
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE6 VQIFGSFSTGLYLPTSDIDLVVFGKWERPPLQLLEQALRKHNVAEPCSIKVLDKATVPII
:::::::.::::::::::::::::::: :: ::.:::::.::. :.:::::::::::
XP_011 VQIFGSFKTGLYLPTSDIDLVVFGKWENLPLWTLEEALRKHKVADEDSVKVLDKATVPII
70 80 90 100 110 120
100 110 120 130 140 150
pF1KE6 KLTDQETEVKVDISFNMETGVRAAEFIKNYMKKYSLLPYLILVLKQFLLQRDLNEVFTGG
::::. ::::::::::...:::::..::.. ::: .::::.:::::::::::::::::::
XP_011 KLTDSFTEVKVDISFNVQNGVRAADLIKDFTKKYPVLPYLVLVLKQFLLQRDLNEVFTGG
130 140 150 160 170 180
160 170 180 190 200 210
pF1KE6 ISSYSLILMAISFLQLHPRIDARRADENLGMLLVEFFELYGRNFNYLKTGIRIKEGGAYI
:.::::.:::.:::::::: :: . : :.::.::::::::.:::::::::::.::.:.
XP_011 IGSYSLFLMAVSFLQLHPREDACIPNTNYGVLLIEFFELYGRHFNYLKTGIRIKDGGSYV
190 200 210 220 230 240
220 230 240 250 260 270
pF1KE6 AKEEIMKAMTSGYRPSMLCIEDPLLPGNDVGRSSYGAMQVKQVFDYAYIVLSHAVSPLAR
::.:..: : .::::::: ::::: :::::::::::::::::.:::::.::::::::.:.
XP_011 AKDEVQKNMLDGYRPSMLYIEDPLQPGNDVGRSSYGAMQVKQAFDYAYVVLSHAVSPIAK
250 260 270 280 290 300
280 290 300 310 320
pF1KE6 SYPNRDAESTLGRIIKVTQEVIDYRRWIKEKWGSKAHPSPGMDSR----IKIKERIATCN
::: ..:: :::::.::.:: :: ::...:: : .: :. .. : ... ::
XP_011 YYPNNETESILGRIIRVTDEVATYRDWISKQWGLKNRPEPSCNGNGVTLIVDTQQLDKCN
310 320 330 340 350 360
330 340 350 360 370 380
pF1KE6 GEQTQNREPESPYGQRLTLSLSSPQLLSSGS--SASSVSSLSGSDVDSDTPPCTTPSVYQ
.. ... : . .. . :::. . ::.. :.::... :.::::::. :: ::
XP_011 NNLSEENEALGKCRSKTSESLSKHSSNSSSGPVSSSSATQSSSSDVDSDATPCKTPKQLL
370 380 390 400 410 420
390 400 410 420 430 440
pF1KE6 FSLQAPAPLMAGLPTALPMPSGKPQPTTSRTLIMTTNNQTRFTIPPPTLGVAPVPCRQAG
XP_011 CRPSTGNRVGSQDVSLESSQAVGKMQSTQTTNTSNSTNKSQHGSARLFRSSSKGFQGTTQ
430 440 450 460 470 480
>>XP_005256150 (OMIM: 605540) PREDICTED: non-canonical p (673 aa)
initn: 1642 init1: 1554 opt: 1648 Z-score: 1073.6 bits: 208.7 E(85289): 4.6e-53
Smith-Waterman score: 1648; 66.1% identity (84.5% similar) in 386 aa overlap (1-380:211-596)
10 20 30
pF1KE6 MSPCPEEAAMRREVVKRIETVVKDLWPTAD
::: ::: :: :::.:::.:.:.:::.::
XP_005 VVYSGTPWKRRNYNQGVVGLHEEISDFYEYMSPRPEEEKMRMEVVNRIESVIKELWPSAD
190 200 210 220 230 240
40 50 60 70 80 90
pF1KE6 VQIFGSFSTGLYLPTSDIDLVVFGKWERPPLQLLEQALRKHNVAEPCSIKVLDKATVPII
:::::::.::::::::::::::::::: :: ::.:::::.::. :.:::::::::::
XP_005 VQIFGSFKTGLYLPTSDIDLVVFGKWENLPLWTLEEALRKHKVADEDSVKVLDKATVPII
250 260 270 280 290 300
100 110 120 130 140 150
pF1KE6 KLTDQETEVKVDISFNMETGVRAAEFIKNYMKKYSLLPYLILVLKQFLLQRDLNEVFTGG
::::. ::::::::::...:::::..::.. ::: .::::.:::::::::::::::::::
XP_005 KLTDSFTEVKVDISFNVQNGVRAADLIKDFTKKYPVLPYLVLVLKQFLLQRDLNEVFTGG
310 320 330 340 350 360
160 170 180 190 200 210
pF1KE6 ISSYSLILMAISFLQLHPRIDARRADENLGMLLVEFFELYGRNFNYLKTGIRIKEGGAYI
:.::::.:::.:::::::: :: . : :.::.::::::::.:::::::::::.::.:.
XP_005 IGSYSLFLMAVSFLQLHPREDACIPNTNYGVLLIEFFELYGRHFNYLKTGIRIKDGGSYV
370 380 390 400 410 420
220 230 240 250 260 270
pF1KE6 AKEEIMKAMTSGYRPSMLCIEDPLLPGNDVGRSSYGAMQVKQVFDYAYIVLSHAVSPLAR
::.:..: : .::::::: ::::: :::::::::::::::::.:::::.::::::::.:.
XP_005 AKDEVQKNMLDGYRPSMLYIEDPLQPGNDVGRSSYGAMQVKQAFDYAYVVLSHAVSPIAK
430 440 450 460 470 480
280 290 300 310 320
pF1KE6 SYPNRDAESTLGRIIKVTQEVIDYRRWIKEKWGSKAHPSPGMDSR----IKIKERIATCN
::: ..:: :::::.::.:: :: ::...:: : .: :. .. : ... ::
XP_005 YYPNNETESILGRIIRVTDEVATYRDWISKQWGLKNRPEPSCNGNGVTLIVDTQQLDKCN
490 500 510 520 530 540
330 340 350 360 370 380
pF1KE6 GEQTQNREPESPYGQRLTLSLSSPQLLSSGS--SASSVSSLSGSDVDSDTPPCTTPSVYQ
.. ... : . .. . :::. . ::.. :.::... :.::::::. :: ::
XP_005 NNLSEENEALGKCRSKTSESLSKHSSNSSSGPVSSSSATQSSSSDVDSDATPCKTPKQLL
550 560 570 580 590 600
390 400 410 420 430 440
pF1KE6 FSLQAPAPLMAGLPTALPMPSGKPQPTTSRTLIMTTNNQTRFTIPPPTLGVAPVPCRQAG
XP_005 CRPSTGNRVGSQDVSLESSQAVGKMQSTQTTNTSNSTNKSQHGSARLFRSSSKGFQALSS
610 620 630 640 650 660
542 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 16:00:14 2016 done: Tue Nov 8 16:00:15 2016
Total Scan time: 9.300 Total Display time: 0.080
Function used was FASTA [36.3.4 Apr, 2011]