Result of FASTA (omim) for
pFN21AE6717
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6717, 738 aa
1>>>pF1KE6717 738 - 738 aa - 738 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.8068+/-0.00043; mu= 18.2369+/- 0.027
mean_var=82.7332+/-16.429, 0's: 0 Z-trim(111.5): 31 B-trim: 696 in 1/56
Lambda= 0.141005
statistics sampled from 20104 (20111) to 20104 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.596), E-opt: 0.2 (0.236), width: 16
Scan time: 11.750
The best scores are: opt bits E(85289)
NP_031383 (OMIM: 606974) conserved oligomeric Golg ( 738) 4765 979.8 0
NP_001138508 (OMIM: 606974) conserved oligomeric G ( 737) 4748 976.3 0
>>NP_031383 (OMIM: 606974) conserved oligomeric Golgi co (738 aa)
initn: 4765 init1: 4765 opt: 4765 Z-score: 5237.7 bits: 979.8 E(85289): 0
Smith-Waterman score: 4765; 100.0% identity (100.0% similar) in 738 aa overlap (1-738:1-738)
10 20 30 40 50 60
pF1KE6 MEKSRMNLPKGPDTLCFDKDEFMKEDFDVDHFVSDCRKRVQLEELRDDLELYYKLLKTAM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_031 MEKSRMNLPKGPDTLCFDKDEFMKEDFDVDHFVSDCRKRVQLEELRDDLELYYKLLKTAM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 VELINKDYADFVNLSTNLVGMDKALNQLSVPLGQLREEVLSLRSSVSEGIRAVDERMSKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_031 VELINKDYADFVNLSTNLVGMDKALNQLSVPLGQLREEVLSLRSSVSEGIRAVDERMSKQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 EDIRKKKMCVLRLIQVIRSVEKIEKILNSQSSKETSALEASSPLLTGQILERIATEFNQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_031 EDIRKKKMCVLRLIQVIRSVEKIEKILNSQSSKETSALEASSPLLTGQILERIATEFNQL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 QFHAVQSKGMPLLDKVRPRIAGITAMLQQSLEGLLLEGLQTSDVDIIRHCLRTYATIDKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_031 QFHAVQSKGMPLLDKVRPRIAGITAMLQQSLEGLLLEGLQTSDVDIIRHCLRTYATIDKT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE6 RDAEALVGQVLVKPYIDEVIIEQFVESHPNGLQVMYNKLLEFVPHHCRLLREVTGGAISS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_031 RDAEALVGQVLVKPYIDEVIIEQFVESHPNGLQVMYNKLLEFVPHHCRLLREVTGGAISS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE6 EKGNTVPGYDFLVNSVWPQIVQGLEEKLPSLFNPGNPDAFHEKYTISMDFVRRLERQCGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_031 EKGNTVPGYDFLVNSVWPQIVQGLEEKLPSLFNPGNPDAFHEKYTISMDFVRRLERQCGS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE6 QASVKRLRAHPAYHSFNKKWNLPVYFQIRFREIAGSLEAALTDVLEDAPAESPYCLLASH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_031 QASVKRLRAHPAYHSFNKKWNLPVYFQIRFREIAGSLEAALTDVLEDAPAESPYCLLASH
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE6 RTWSSLRRCWSDEMFLPLLVHRLWRLTLQILARYSVFVNELSLRPISNESPKEIKKPLVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_031 RTWSSLRRCWSDEMFLPLLVHRLWRLTLQILARYSVFVNELSLRPISNESPKEIKKPLVT
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE6 GSKEPSITQGNTEDQGSGPSETKPVVSISRTQLVYVVADLDKLQEQLPELLEIIKPKLEM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_031 GSKEPSITQGNTEDQGSGPSETKPVVSISRTQLVYVVADLDKLQEQLPELLEIIKPKLEM
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE6 IGFKNFSSISAALEDSQSSFSACVPSLSSKIIQDLSDSCFGFLKSALEVPRLYRRTNKEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_031 IGFKNFSSISAALEDSQSSFSACVPSLSSKIIQDLSDSCFGFLKSALEVPRLYRRTNKEV
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE6 PTTASSYVDSALKPLFQLQSGHKDKLKQAIIQQWLEGTLSESTHKYYETVSDVLNSVKKM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_031 PTTASSYVDSALKPLFQLQSGHKDKLKQAIIQQWLEGTLSESTHKYYETVSDVLNSVKKM
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE6 EESLKRLKQARKTTPANPVGPSGGMSDDDKIRLQLALDVEYLGEQIQKLGLQASDIKSFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_031 EESLKRLKQARKTTPANPVGPSGGMSDDDKIRLQLALDVEYLGEQIQKLGLQASDIKSFS
670 680 690 700 710 720
730
pF1KE6 ALAELVAAAKDQATAEQP
::::::::::::::::::
NP_031 ALAELVAAAKDQATAEQP
730
>>NP_001138508 (OMIM: 606974) conserved oligomeric Golgi (737 aa)
initn: 3587 init1: 3587 opt: 4748 Z-score: 5219.1 bits: 976.3 E(85289): 0
Smith-Waterman score: 4748; 99.9% identity (99.9% similar) in 738 aa overlap (1-738:1-737)
10 20 30 40 50 60
pF1KE6 MEKSRMNLPKGPDTLCFDKDEFMKEDFDVDHFVSDCRKRVQLEELRDDLELYYKLLKTAM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEKSRMNLPKGPDTLCFDKDEFMKEDFDVDHFVSDCRKRVQLEELRDDLELYYKLLKTAM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 VELINKDYADFVNLSTNLVGMDKALNQLSVPLGQLREEVLSLRSSVSEGIRAVDERMSKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VELINKDYADFVNLSTNLVGMDKALNQLSVPLGQLREEVLSLRSSVSEGIRAVDERMSKQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 EDIRKKKMCVLRLIQVIRSVEKIEKILNSQSSKETSALEASSPLLTGQILERIATEFNQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EDIRKKKMCVLRLIQVIRSVEKIEKILNSQSSKETSALEASSPLLTGQILERIATEFNQL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 QFHAVQSKGMPLLDKVRPRIAGITAMLQQSLEGLLLEGLQTSDVDIIRHCLRTYATIDKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QFHAVQSKGMPLLDKVRPRIAGITAMLQQSLEGLLLEGLQTSDVDIIRHCLRTYATIDKT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE6 RDAEALVGQVLVKPYIDEVIIEQFVESHPNGLQVMYNKLLEFVPHHCRLLREVTGGAISS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RDAEALVGQVLVKPYIDEVIIEQFVESHPNGLQVMYNKLLEFVPHHCRLLREVTGGAISS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE6 EKGNTVPGYDFLVNSVWPQIVQGLEEKLPSLFNPGNPDAFHEKYTISMDFVRRLERQCGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EKGNTVPGYDFLVNSVWPQIVQGLEEKLPSLFNPGNPDAFHEKYTISMDFVRRLERQCGS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE6 QASVKRLRAHPAYHSFNKKWNLPVYFQIRFREIAGSLEAALTDVLEDAPAESPYCLLASH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QASVKRLRAHPAYHSFNKKWNLPVYFQIRFREIAGSLEAALTDVLEDAPAESPYCLLASH
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE6 RTWSSLRRCWSDEMFLPLLVHRLWRLTLQILARYSVFVNELSLRPISNESPKEIKKPLVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RTWSSLRRCWSDEMFLPLLVHRLWRLTLQILARYSVFVNELSLRPISNESPKEIKKPLVT
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE6 GSKEPSITQGNTEDQGSGPSETKPVVSISRTQLVYVVADLDKLQEQLPELLEIIKPKLEM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GSKEPSITQGNTEDQGSGPSETKPVVSISRTQLVYVVADLDKLQEQLPELLEIIKPKLEM
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE6 IGFKNFSSISAALEDSQSSFSACVPSLSSKIIQDLSDSCFGFLKSALEVPRLYRRTNKEV
::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IGFKNFSSISA-LEDSQSSFSACVPSLSSKIIQDLSDSCFGFLKSALEVPRLYRRTNKEV
550 560 570 580 590
610 620 630 640 650 660
pF1KE6 PTTASSYVDSALKPLFQLQSGHKDKLKQAIIQQWLEGTLSESTHKYYETVSDVLNSVKKM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PTTASSYVDSALKPLFQLQSGHKDKLKQAIIQQWLEGTLSESTHKYYETVSDVLNSVKKM
600 610 620 630 640 650
670 680 690 700 710 720
pF1KE6 EESLKRLKQARKTTPANPVGPSGGMSDDDKIRLQLALDVEYLGEQIQKLGLQASDIKSFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EESLKRLKQARKTTPANPVGPSGGMSDDDKIRLQLALDVEYLGEQIQKLGLQASDIKSFS
660 670 680 690 700 710
730
pF1KE6 ALAELVAAAKDQATAEQP
::::::::::::::::::
NP_001 ALAELVAAAKDQATAEQP
720 730
738 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 15:40:20 2016 done: Tue Nov 8 15:40:22 2016
Total Scan time: 11.750 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]