Result of FASTA (ccds) for
pFN21AE6717
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6717, 738 aa
1>>>pF1KE6717 738 - 738 aa - 738 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.3916+/-0.00104; mu= 14.5963+/- 0.062
mean_var=80.4032+/-15.766, 0's: 0 Z-trim(104.4): 21 B-trim: 0 in 0/52
Lambda= 0.143033
statistics sampled from 7855 (7862) to 7855 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.605), E-opt: 0.2 (0.242), width: 16
Scan time: 3.270
The best scores are: opt bits E(32554)
CCDS1584.1 COG2 gene_id:22796|Hs108|chr1 ( 738) 4765 993.5 0
CCDS44329.1 COG2 gene_id:22796|Hs108|chr1 ( 737) 4748 990.0 0
>>CCDS1584.1 COG2 gene_id:22796|Hs108|chr1 (738 aa)
initn: 4765 init1: 4765 opt: 4765 Z-score: 5311.8 bits: 993.5 E(32554): 0
Smith-Waterman score: 4765; 100.0% identity (100.0% similar) in 738 aa overlap (1-738:1-738)
10 20 30 40 50 60
pF1KE6 MEKSRMNLPKGPDTLCFDKDEFMKEDFDVDHFVSDCRKRVQLEELRDDLELYYKLLKTAM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 MEKSRMNLPKGPDTLCFDKDEFMKEDFDVDHFVSDCRKRVQLEELRDDLELYYKLLKTAM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 VELINKDYADFVNLSTNLVGMDKALNQLSVPLGQLREEVLSLRSSVSEGIRAVDERMSKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 VELINKDYADFVNLSTNLVGMDKALNQLSVPLGQLREEVLSLRSSVSEGIRAVDERMSKQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 EDIRKKKMCVLRLIQVIRSVEKIEKILNSQSSKETSALEASSPLLTGQILERIATEFNQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 EDIRKKKMCVLRLIQVIRSVEKIEKILNSQSSKETSALEASSPLLTGQILERIATEFNQL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 QFHAVQSKGMPLLDKVRPRIAGITAMLQQSLEGLLLEGLQTSDVDIIRHCLRTYATIDKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 QFHAVQSKGMPLLDKVRPRIAGITAMLQQSLEGLLLEGLQTSDVDIIRHCLRTYATIDKT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE6 RDAEALVGQVLVKPYIDEVIIEQFVESHPNGLQVMYNKLLEFVPHHCRLLREVTGGAISS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 RDAEALVGQVLVKPYIDEVIIEQFVESHPNGLQVMYNKLLEFVPHHCRLLREVTGGAISS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE6 EKGNTVPGYDFLVNSVWPQIVQGLEEKLPSLFNPGNPDAFHEKYTISMDFVRRLERQCGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 EKGNTVPGYDFLVNSVWPQIVQGLEEKLPSLFNPGNPDAFHEKYTISMDFVRRLERQCGS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE6 QASVKRLRAHPAYHSFNKKWNLPVYFQIRFREIAGSLEAALTDVLEDAPAESPYCLLASH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 QASVKRLRAHPAYHSFNKKWNLPVYFQIRFREIAGSLEAALTDVLEDAPAESPYCLLASH
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE6 RTWSSLRRCWSDEMFLPLLVHRLWRLTLQILARYSVFVNELSLRPISNESPKEIKKPLVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 RTWSSLRRCWSDEMFLPLLVHRLWRLTLQILARYSVFVNELSLRPISNESPKEIKKPLVT
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE6 GSKEPSITQGNTEDQGSGPSETKPVVSISRTQLVYVVADLDKLQEQLPELLEIIKPKLEM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 GSKEPSITQGNTEDQGSGPSETKPVVSISRTQLVYVVADLDKLQEQLPELLEIIKPKLEM
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE6 IGFKNFSSISAALEDSQSSFSACVPSLSSKIIQDLSDSCFGFLKSALEVPRLYRRTNKEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 IGFKNFSSISAALEDSQSSFSACVPSLSSKIIQDLSDSCFGFLKSALEVPRLYRRTNKEV
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE6 PTTASSYVDSALKPLFQLQSGHKDKLKQAIIQQWLEGTLSESTHKYYETVSDVLNSVKKM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 PTTASSYVDSALKPLFQLQSGHKDKLKQAIIQQWLEGTLSESTHKYYETVSDVLNSVKKM
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE6 EESLKRLKQARKTTPANPVGPSGGMSDDDKIRLQLALDVEYLGEQIQKLGLQASDIKSFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 EESLKRLKQARKTTPANPVGPSGGMSDDDKIRLQLALDVEYLGEQIQKLGLQASDIKSFS
670 680 690 700 710 720
730
pF1KE6 ALAELVAAAKDQATAEQP
::::::::::::::::::
CCDS15 ALAELVAAAKDQATAEQP
730
>>CCDS44329.1 COG2 gene_id:22796|Hs108|chr1 (737 aa)
initn: 3587 init1: 3587 opt: 4748 Z-score: 5292.8 bits: 990.0 E(32554): 0
Smith-Waterman score: 4748; 99.9% identity (99.9% similar) in 738 aa overlap (1-738:1-737)
10 20 30 40 50 60
pF1KE6 MEKSRMNLPKGPDTLCFDKDEFMKEDFDVDHFVSDCRKRVQLEELRDDLELYYKLLKTAM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MEKSRMNLPKGPDTLCFDKDEFMKEDFDVDHFVSDCRKRVQLEELRDDLELYYKLLKTAM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 VELINKDYADFVNLSTNLVGMDKALNQLSVPLGQLREEVLSLRSSVSEGIRAVDERMSKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 VELINKDYADFVNLSTNLVGMDKALNQLSVPLGQLREEVLSLRSSVSEGIRAVDERMSKQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 EDIRKKKMCVLRLIQVIRSVEKIEKILNSQSSKETSALEASSPLLTGQILERIATEFNQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 EDIRKKKMCVLRLIQVIRSVEKIEKILNSQSSKETSALEASSPLLTGQILERIATEFNQL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 QFHAVQSKGMPLLDKVRPRIAGITAMLQQSLEGLLLEGLQTSDVDIIRHCLRTYATIDKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 QFHAVQSKGMPLLDKVRPRIAGITAMLQQSLEGLLLEGLQTSDVDIIRHCLRTYATIDKT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE6 RDAEALVGQVLVKPYIDEVIIEQFVESHPNGLQVMYNKLLEFVPHHCRLLREVTGGAISS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 RDAEALVGQVLVKPYIDEVIIEQFVESHPNGLQVMYNKLLEFVPHHCRLLREVTGGAISS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE6 EKGNTVPGYDFLVNSVWPQIVQGLEEKLPSLFNPGNPDAFHEKYTISMDFVRRLERQCGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 EKGNTVPGYDFLVNSVWPQIVQGLEEKLPSLFNPGNPDAFHEKYTISMDFVRRLERQCGS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE6 QASVKRLRAHPAYHSFNKKWNLPVYFQIRFREIAGSLEAALTDVLEDAPAESPYCLLASH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 QASVKRLRAHPAYHSFNKKWNLPVYFQIRFREIAGSLEAALTDVLEDAPAESPYCLLASH
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE6 RTWSSLRRCWSDEMFLPLLVHRLWRLTLQILARYSVFVNELSLRPISNESPKEIKKPLVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 RTWSSLRRCWSDEMFLPLLVHRLWRLTLQILARYSVFVNELSLRPISNESPKEIKKPLVT
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE6 GSKEPSITQGNTEDQGSGPSETKPVVSISRTQLVYVVADLDKLQEQLPELLEIIKPKLEM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 GSKEPSITQGNTEDQGSGPSETKPVVSISRTQLVYVVADLDKLQEQLPELLEIIKPKLEM
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE6 IGFKNFSSISAALEDSQSSFSACVPSLSSKIIQDLSDSCFGFLKSALEVPRLYRRTNKEV
::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 IGFKNFSSISA-LEDSQSSFSACVPSLSSKIIQDLSDSCFGFLKSALEVPRLYRRTNKEV
550 560 570 580 590
610 620 630 640 650 660
pF1KE6 PTTASSYVDSALKPLFQLQSGHKDKLKQAIIQQWLEGTLSESTHKYYETVSDVLNSVKKM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 PTTASSYVDSALKPLFQLQSGHKDKLKQAIIQQWLEGTLSESTHKYYETVSDVLNSVKKM
600 610 620 630 640 650
670 680 690 700 710 720
pF1KE6 EESLKRLKQARKTTPANPVGPSGGMSDDDKIRLQLALDVEYLGEQIQKLGLQASDIKSFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 EESLKRLKQARKTTPANPVGPSGGMSDDDKIRLQLALDVEYLGEQIQKLGLQASDIKSFS
660 670 680 690 700 710
730
pF1KE6 ALAELVAAAKDQATAEQP
::::::::::::::::::
CCDS44 ALAELVAAAKDQATAEQP
720 730
738 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 15:40:19 2016 done: Tue Nov 8 15:40:20 2016
Total Scan time: 3.270 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]