Result of FASTA (ccds) for
pFN21AE6706
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6706, 1004 aa
1>>>pF1KE6706 1004 - 1004 aa - 1004 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.6409+/-0.00103; mu= 18.9816+/- 0.062
mean_var=62.6632+/-11.978, 0's: 0 Z-trim(103.1): 24 B-trim: 18 in 1/47
Lambda= 0.162020
statistics sampled from 7242 (7247) to 7242 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.583), E-opt: 0.2 (0.223), width: 16
Scan time: 2.770
The best scores are: opt bits E(32554)
CCDS3140.1 HPS3 gene_id:84343|Hs108|chr3 (1004) 6661 1566.4 0
CCDS77836.1 HPS3 gene_id:84343|Hs108|chr3 ( 839) 5064 1193.1 0
>>CCDS3140.1 HPS3 gene_id:84343|Hs108|chr3 (1004 aa)
initn: 6661 init1: 6661 opt: 6661 Z-score: 8403.1 bits: 1566.4 E(32554): 0
Smith-Waterman score: 6661; 100.0% identity (100.0% similar) in 1004 aa overlap (1-1004:1-1004)
10 20 30 40 50 60
pF1KE6 MVQLYNLHPFGSQQVVPCKLEPDRFCGGGRDALFVAAGCKVEAFAVAGQELCQPRCAFST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MVQLYNLHPFGSQQVVPCKLEPDRFCGGGRDALFVAAGCKVEAFAVAGQELCQPRCAFST
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 LGRVLRLAYSEAGDYLVAIEEKNKATFLRAYVNWRNKRTENSRVCIRMIGHNVEGPFSKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LGRVLRLAYSEAGDYLVAIEEKNKATFLRAYVNWRNKRTENSRVCIRMIGHNVEGPFSKA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 FRDQMYIIEMPLSEAPLCISCCPVKGDLLVGCTNKLVLFSLKYQIINEEFSLLDFERSLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 FRDQMYIIEMPLSEAPLCISCCPVKGDLLVGCTNKLVLFSLKYQIINEEFSLLDFERSLI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 IHIDNITPVEVSFCVGYVAVMSDLEVLIVKLESGPKNGERVHHHPHKTNNRIRRTEEGIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 IHIDNITPVEVSFCVGYVAVMSDLEVLIVKLESGPKNGERVHHHPHKTNNRIRRTEEGIS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE6 NEISQLESDDFVICQKPLELLGEKSEQSGLSVTLESTGLADEKRKYSHFQHLLYRRFAPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 NEISQLESDDFVICQKPLELLGEKSEQSGLSVTLESTGLADEKRKYSHFQHLLYRRFAPD
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE6 ISSYVLSDDIKLHSLQLLPIYQTGSLTSDGKNLSQEKELLSLFCFFSLPHVGYLYMVVKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ISSYVLSDDIKLHSLQLLPIYQTGSLTSDGKNLSQEKELLSLFCFFSLPHVGYLYMVVKS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE6 VELMSVYQYPEKSQQAVLTPQFLHVITSNNLQCFTVRCSAAAAREEDPYMDTTLKACPPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 VELMSVYQYPEKSQQAVLTPQFLHVITSNNLQCFTVRCSAAAAREEDPYMDTTLKACPPV
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE6 SMDVCALRIQLFIGLKAICHFKNHIILLTKAEPEAIPERRQSPKRLLSRKDTSVKIKIPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SMDVCALRIQLFIGLKAICHFKNHIILLTKAEPEAIPERRQSPKRLLSRKDTSVKIKIPP
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE6 VAEAGWNLYIVNTISPVQLYKEMVDYSNTYKTVKTQSCIHLLSEAHLLVRAALMDASQLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 VAEAGWNLYIVNTISPVQLYKEMVDYSNTYKTVKTQSCIHLLSEAHLLVRAALMDASQLE
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE6 PGEKAELLEAFKESCGHLGDCYSRLDSQHSHLTLPYYKMSGLSMAEVLARTDWTVEDGLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PGEKAELLEAFKESCGHLGDCYSRLDSQHSHLTLPYYKMSGLSMAEVLARTDWTVEDGLQ
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE6 KYERGLIFYINHSLYENLDEELNEELAAKVVQMFYVAEPKQVPHILCSPSMKNINPLTAM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 KYERGLIFYINHSLYENLDEELNEELAAKVVQMFYVAEPKQVPHILCSPSMKNINPLTAM
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE6 SYLRKLDTSGFSSILVTLTKAAVALKMGDLDMHRNEMKSHSEMKLVCGFILEPRLLIQQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SYLRKLDTSGFSSILVTLTKAAVALKMGDLDMHRNEMKSHSEMKLVCGFILEPRLLIQQR
670 680 690 700 710 720
730 740 750 760 770 780
pF1KE6 KGQIVPTELALHLKETQPGLLVASVLGLQKNNKIGIEEADSFFKVLCAKDEDTIPQLLVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 KGQIVPTELALHLKETQPGLLVASVLGLQKNNKIGIEEADSFFKVLCAKDEDTIPQLLVD
730 740 750 760 770 780
790 800 810 820 830 840
pF1KE6 FWEAQLVACLPDVVLQELFFKLTSQYIWRLSKRQPPDTTPLRTSEDLINACSHYGLIYPW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 FWEAQLVACLPDVVLQELFFKLTSQYIWRLSKRQPPDTTPLRTSEDLINACSHYGLIYPW
790 800 810 820 830 840
850 860 870 880 890 900
pF1KE6 VHVVISSDSLADKNYTEDLSKLQSLICGPSFDIASIIPFLEPLSEDTIAGLSVHVLCRTR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 VHVVISSDSLADKNYTEDLSKLQSLICGPSFDIASIIPFLEPLSEDTIAGLSVHVLCRTR
850 860 870 880 890 900
910 920 930 940 950 960
pF1KE6 LKEYEQCIDILLERCPEAVIPYANHELKEENRTLWWKKLLPELCQRIKCGGEKYQLYLSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LKEYEQCIDILLERCPEAVIPYANHELKEENRTLWWKKLLPELCQRIKCGGEKYQLYLSS
910 920 930 940 950 960
970 980 990 1000
pF1KE6 LKETLSIVAVELELKDFMNVLPEDGTATFFLPYLLYCSRKKPLT
::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LKETLSIVAVELELKDFMNVLPEDGTATFFLPYLLYCSRKKPLT
970 980 990 1000
>>CCDS77836.1 HPS3 gene_id:84343|Hs108|chr3 (839 aa)
initn: 5064 init1: 5064 opt: 5064 Z-score: 6386.9 bits: 1193.1 E(32554): 0
Smith-Waterman score: 5214; 83.6% identity (83.6% similar) in 1004 aa overlap (1-1004:1-839)
10 20 30 40 50 60
pF1KE6 MVQLYNLHPFGSQQVVPCKLEPDRFCGGGRDALFVAAGCKVEAFAVAGQELCQPRCAFST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 MVQLYNLHPFGSQQVVPCKLEPDRFCGGGRDALFVAAGCKVEAFAVAGQELCQPRCAFST
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 LGRVLRLAYSEAGDYLVAIEEKNKATFLRAYVNWRNKRTENSRVCIRMIGHNVEGPFSKA
:::::::::::::
CCDS77 LGRVLRLAYSEAG-----------------------------------------------
70
130 140 150 160 170 180
pF1KE6 FRDQMYIIEMPLSEAPLCISCCPVKGDLLVGCTNKLVLFSLKYQIINEEFSLLDFERSLI
CCDS77 ------------------------------------------------------------
190 200 210 220 230 240
pF1KE6 IHIDNITPVEVSFCVGYVAVMSDLEVLIVKLESGPKNGERVHHHPHKTNNRIRRTEEGIS
::
CCDS77 ----------------------------------------------------------IS
250 260 270 280 290 300
pF1KE6 NEISQLESDDFVICQKPLELLGEKSEQSGLSVTLESTGLADEKRKYSHFQHLLYRRFAPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 NEISQLESDDFVICQKPLELLGEKSEQSGLSVTLESTGLADEKRKYSHFQHLLYRRFAPD
80 90 100 110 120 130
310 320 330 340 350 360
pF1KE6 ISSYVLSDDIKLHSLQLLPIYQTGSLTSDGKNLSQEKELLSLFCFFSLPHVGYLYMVVKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 ISSYVLSDDIKLHSLQLLPIYQTGSLTSDGKNLSQEKELLSLFCFFSLPHVGYLYMVVKS
140 150 160 170 180 190
370 380 390 400 410 420
pF1KE6 VELMSVYQYPEKSQQAVLTPQFLHVITSNNLQCFTVRCSAAAAREEDPYMDTTLKACPPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 VELMSVYQYPEKSQQAVLTPQFLHVITSNNLQCFTVRCSAAAAREEDPYMDTTLKACPPV
200 210 220 230 240 250
430 440 450 460 470 480
pF1KE6 SMDVCALRIQLFIGLKAICHFKNHIILLTKAEPEAIPERRQSPKRLLSRKDTSVKIKIPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 SMDVCALRIQLFIGLKAICHFKNHIILLTKAEPEAIPERRQSPKRLLSRKDTSVKIKIPP
260 270 280 290 300 310
490 500 510 520 530 540
pF1KE6 VAEAGWNLYIVNTISPVQLYKEMVDYSNTYKTVKTQSCIHLLSEAHLLVRAALMDASQLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 VAEAGWNLYIVNTISPVQLYKEMVDYSNTYKTVKTQSCIHLLSEAHLLVRAALMDASQLE
320 330 340 350 360 370
550 560 570 580 590 600
pF1KE6 PGEKAELLEAFKESCGHLGDCYSRLDSQHSHLTLPYYKMSGLSMAEVLARTDWTVEDGLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 PGEKAELLEAFKESCGHLGDCYSRLDSQHSHLTLPYYKMSGLSMAEVLARTDWTVEDGLQ
380 390 400 410 420 430
610 620 630 640 650 660
pF1KE6 KYERGLIFYINHSLYENLDEELNEELAAKVVQMFYVAEPKQVPHILCSPSMKNINPLTAM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 KYERGLIFYINHSLYENLDEELNEELAAKVVQMFYVAEPKQVPHILCSPSMKNINPLTAM
440 450 460 470 480 490
670 680 690 700 710 720
pF1KE6 SYLRKLDTSGFSSILVTLTKAAVALKMGDLDMHRNEMKSHSEMKLVCGFILEPRLLIQQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 SYLRKLDTSGFSSILVTLTKAAVALKMGDLDMHRNEMKSHSEMKLVCGFILEPRLLIQQR
500 510 520 530 540 550
730 740 750 760 770 780
pF1KE6 KGQIVPTELALHLKETQPGLLVASVLGLQKNNKIGIEEADSFFKVLCAKDEDTIPQLLVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 KGQIVPTELALHLKETQPGLLVASVLGLQKNNKIGIEEADSFFKVLCAKDEDTIPQLLVD
560 570 580 590 600 610
790 800 810 820 830 840
pF1KE6 FWEAQLVACLPDVVLQELFFKLTSQYIWRLSKRQPPDTTPLRTSEDLINACSHYGLIYPW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 FWEAQLVACLPDVVLQELFFKLTSQYIWRLSKRQPPDTTPLRTSEDLINACSHYGLIYPW
620 630 640 650 660 670
850 860 870 880 890 900
pF1KE6 VHVVISSDSLADKNYTEDLSKLQSLICGPSFDIASIIPFLEPLSEDTIAGLSVHVLCRTR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 VHVVISSDSLADKNYTEDLSKLQSLICGPSFDIASIIPFLEPLSEDTIAGLSVHVLCRTR
680 690 700 710 720 730
910 920 930 940 950 960
pF1KE6 LKEYEQCIDILLERCPEAVIPYANHELKEENRTLWWKKLLPELCQRIKCGGEKYQLYLSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 LKEYEQCIDILLERCPEAVIPYANHELKEENRTLWWKKLLPELCQRIKCGGEKYQLYLSS
740 750 760 770 780 790
970 980 990 1000
pF1KE6 LKETLSIVAVELELKDFMNVLPEDGTATFFLPYLLYCSRKKPLT
::::::::::::::::::::::::::::::::::::::::::::
CCDS77 LKETLSIVAVELELKDFMNVLPEDGTATFFLPYLLYCSRKKPLT
800 810 820 830
1004 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 15:33:07 2016 done: Tue Nov 8 15:33:08 2016
Total Scan time: 2.770 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]