FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6694, 398 aa
  1>>>pF1KE6694 398 - 398 aa - 398 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1378+/-0.000283; mu= 15.4910+/- 0.018
 mean_var=118.8657+/-24.149, 0's: 0 Z-trim(121.6): 2  B-trim: 1889 in 1/54
 Lambda= 0.117638
 statistics sampled from 38475 (38477) to 38475 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.779), E-opt: 0.2 (0.451), width:  16
 Scan time:  5.990

The best scores are:                                      opt bits E(85289)
NP_001035363 (OMIM: 611017) peroxisomal leader pep ( 398) 2788 483.6 3.7e-136
NP_775826 (OMIM: 611017) peroxisomal leader peptid ( 566) 2712 470.8 3.6e-132


>>NP_001035363 (OMIM: 611017) peroxisomal leader peptide  (398 aa)
 initn: 2788 init1: 2788 opt: 2788  Z-score: 2565.5  bits: 483.6 E(85289): 3.7e-136
Smith-Waterman score: 2788; 100.0% identity (100.0% similar) in 398 aa overlap (1-398:1-398)

               10        20        30        40        50        60
pF1KE6 MRRQWGSAMRAAEQAGCMVSASRAGQPEAGPWSCSGVILSRSPGLVLCHGGIFVPFLRAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MRRQWGSAMRAAEQAGCMVSASRAGQPEAGPWSCSGVILSRSPGLVLCHGGIFVPFLRAG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 SEVLTAAGAVFLPGDSCRDDLRLHVQWAPTAAGPGGGAERGRPGLCTPQCASLEPGPPAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SEVLTAAGAVFLPGDSCRDDLRLHVQWAPTAAGPGGGAERGRPGLCTPQCASLEPGPPAP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 SRGRPLQPRLPAELLLLLSCPAFWAHFARLFGDEAAEQWRFSSAARDDEVSEDEEADQLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SRGRPLQPRLPAELLLLLSCPAFWAHFARLFGDEAAEQWRFSSAARDDEVSEDEEADQLR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 ALGWFALLGVRLGQEEVEEERGPAMAVSPLGAVPKGAPLLVCGSPFGAFCPDIFLNTLSC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ALGWFALLGVRLGQEEVEEERGPAMAVSPLGAVPKGAPLLVCGSPFGAFCPDIFLNTLSC
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 GVLSNVAGPLLLTDARCLPGTEGGGVFTARPAGALVALVVAPLCWKAGEWVGFTLLCAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GVLSNVAGPLLLTDARCLPGTEGGGVFTARPAGALVALVVAPLCWKAGEWVGFTLLCAAA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE6 PLFRAARDALHRLPHSTAALAALLPPEVGVPWGLPLRDSGPLWAAAAVLVECGTVWGSGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PLFRAARDALHRLPHSTAALAALLPPEVGVPWGLPLRDSGPLWAAAAVLVECGTVWGSGV
              310       320       330       340       350       360

              370       380       390        
pF1KE6 AVAPRLVVTCRHVSPREAARVLVRSTTPKHNHQQHPGQ
       ::::::::::::::::::::::::::::::::::::::
NP_001 AVAPRLVVTCRHVSPREAARVLVRSTTPKHNHQQHPGQ
              370       380       390        

>>NP_775826 (OMIM: 611017) peroxisomal leader peptide-pr  (566 aa)
 initn: 2712 init1: 2712 opt: 2712  Z-score: 2493.8  bits: 470.8 E(85289): 3.6e-132
Smith-Waterman score: 2712; 100.0% identity (100.0% similar) in 389 aa overlap (1-389:1-389)

               10        20        30        40        50        60
pF1KE6 MRRQWGSAMRAAEQAGCMVSASRAGQPEAGPWSCSGVILSRSPGLVLCHGGIFVPFLRAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_775 MRRQWGSAMRAAEQAGCMVSASRAGQPEAGPWSCSGVILSRSPGLVLCHGGIFVPFLRAG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 SEVLTAAGAVFLPGDSCRDDLRLHVQWAPTAAGPGGGAERGRPGLCTPQCASLEPGPPAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_775 SEVLTAAGAVFLPGDSCRDDLRLHVQWAPTAAGPGGGAERGRPGLCTPQCASLEPGPPAP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 SRGRPLQPRLPAELLLLLSCPAFWAHFARLFGDEAAEQWRFSSAARDDEVSEDEEADQLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_775 SRGRPLQPRLPAELLLLLSCPAFWAHFARLFGDEAAEQWRFSSAARDDEVSEDEEADQLR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 ALGWFALLGVRLGQEEVEEERGPAMAVSPLGAVPKGAPLLVCGSPFGAFCPDIFLNTLSC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_775 ALGWFALLGVRLGQEEVEEERGPAMAVSPLGAVPKGAPLLVCGSPFGAFCPDIFLNTLSC
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 GVLSNVAGPLLLTDARCLPGTEGGGVFTARPAGALVALVVAPLCWKAGEWVGFTLLCAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_775 GVLSNVAGPLLLTDARCLPGTEGGGVFTARPAGALVALVVAPLCWKAGEWVGFTLLCAAA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE6 PLFRAARDALHRLPHSTAALAALLPPEVGVPWGLPLRDSGPLWAAAAVLVECGTVWGSGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_775 PLFRAARDALHRLPHSTAALAALLPPEVGVPWGLPLRDSGPLWAAAAVLVECGTVWGSGV
              310       320       330       340       350       360

              370       380       390                              
pF1KE6 AVAPRLVVTCRHVSPREAARVLVRSTTPKHNHQQHPGQ                      
       :::::::::::::::::::::::::::::                               
NP_775 AVAPRLVVTCRHVSPREAARVLVRSTTPKSVAIWGRVVFATQETCPYDIAVVSLEEDLDD
              370       380       390       400       410       420




398 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 15:28:33 2016 done: Tue Nov  8 15:28:34 2016
 Total Scan time:  5.990 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]