FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6694, 398 aa
  1>>>pF1KE6694 398 - 398 aa - 398 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3090+/-0.000706; mu= 14.6569+/- 0.043
 mean_var=121.0683+/-24.303, 0's: 0 Z-trim(114.7): 4  B-trim: 303 in 1/50
 Lambda= 0.116563
 statistics sampled from 15219 (15222) to 15219 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.789), E-opt: 0.2 (0.468), width:  16
 Scan time:  2.430

The best scores are:                                      opt bits E(32554)
CCDS31214.1 TYSND1 gene_id:219743|Hs108|chr10      ( 398) 2788 479.2 2.8e-135
CCDS31213.1 TYSND1 gene_id:219743|Hs108|chr10      ( 566) 2712 466.6 2.6e-131


>>CCDS31214.1 TYSND1 gene_id:219743|Hs108|chr10           (398 aa)
 initn: 2788 init1: 2788 opt: 2788  Z-score: 2542.1  bits: 479.2 E(32554): 2.8e-135
Smith-Waterman score: 2788; 100.0% identity (100.0% similar) in 398 aa overlap (1-398:1-398)

               10        20        30        40        50        60
pF1KE6 MRRQWGSAMRAAEQAGCMVSASRAGQPEAGPWSCSGVILSRSPGLVLCHGGIFVPFLRAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MRRQWGSAMRAAEQAGCMVSASRAGQPEAGPWSCSGVILSRSPGLVLCHGGIFVPFLRAG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 SEVLTAAGAVFLPGDSCRDDLRLHVQWAPTAAGPGGGAERGRPGLCTPQCASLEPGPPAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SEVLTAAGAVFLPGDSCRDDLRLHVQWAPTAAGPGGGAERGRPGLCTPQCASLEPGPPAP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 SRGRPLQPRLPAELLLLLSCPAFWAHFARLFGDEAAEQWRFSSAARDDEVSEDEEADQLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SRGRPLQPRLPAELLLLLSCPAFWAHFARLFGDEAAEQWRFSSAARDDEVSEDEEADQLR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 ALGWFALLGVRLGQEEVEEERGPAMAVSPLGAVPKGAPLLVCGSPFGAFCPDIFLNTLSC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ALGWFALLGVRLGQEEVEEERGPAMAVSPLGAVPKGAPLLVCGSPFGAFCPDIFLNTLSC
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 GVLSNVAGPLLLTDARCLPGTEGGGVFTARPAGALVALVVAPLCWKAGEWVGFTLLCAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 GVLSNVAGPLLLTDARCLPGTEGGGVFTARPAGALVALVVAPLCWKAGEWVGFTLLCAAA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE6 PLFRAARDALHRLPHSTAALAALLPPEVGVPWGLPLRDSGPLWAAAAVLVECGTVWGSGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PLFRAARDALHRLPHSTAALAALLPPEVGVPWGLPLRDSGPLWAAAAVLVECGTVWGSGV
              310       320       330       340       350       360

              370       380       390        
pF1KE6 AVAPRLVVTCRHVSPREAARVLVRSTTPKHNHQQHPGQ
       ::::::::::::::::::::::::::::::::::::::
CCDS31 AVAPRLVVTCRHVSPREAARVLVRSTTPKHNHQQHPGQ
              370       380       390        

>>CCDS31213.1 TYSND1 gene_id:219743|Hs108|chr10           (566 aa)
 initn: 2712 init1: 2712 opt: 2712  Z-score: 2471.0  bits: 466.6 E(32554): 2.6e-131
Smith-Waterman score: 2712; 100.0% identity (100.0% similar) in 389 aa overlap (1-389:1-389)

               10        20        30        40        50        60
pF1KE6 MRRQWGSAMRAAEQAGCMVSASRAGQPEAGPWSCSGVILSRSPGLVLCHGGIFVPFLRAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MRRQWGSAMRAAEQAGCMVSASRAGQPEAGPWSCSGVILSRSPGLVLCHGGIFVPFLRAG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 SEVLTAAGAVFLPGDSCRDDLRLHVQWAPTAAGPGGGAERGRPGLCTPQCASLEPGPPAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SEVLTAAGAVFLPGDSCRDDLRLHVQWAPTAAGPGGGAERGRPGLCTPQCASLEPGPPAP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 SRGRPLQPRLPAELLLLLSCPAFWAHFARLFGDEAAEQWRFSSAARDDEVSEDEEADQLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SRGRPLQPRLPAELLLLLSCPAFWAHFARLFGDEAAEQWRFSSAARDDEVSEDEEADQLR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 ALGWFALLGVRLGQEEVEEERGPAMAVSPLGAVPKGAPLLVCGSPFGAFCPDIFLNTLSC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ALGWFALLGVRLGQEEVEEERGPAMAVSPLGAVPKGAPLLVCGSPFGAFCPDIFLNTLSC
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 GVLSNVAGPLLLTDARCLPGTEGGGVFTARPAGALVALVVAPLCWKAGEWVGFTLLCAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 GVLSNVAGPLLLTDARCLPGTEGGGVFTARPAGALVALVVAPLCWKAGEWVGFTLLCAAA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE6 PLFRAARDALHRLPHSTAALAALLPPEVGVPWGLPLRDSGPLWAAAAVLVECGTVWGSGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PLFRAARDALHRLPHSTAALAALLPPEVGVPWGLPLRDSGPLWAAAAVLVECGTVWGSGV
              310       320       330       340       350       360

              370       380       390                              
pF1KE6 AVAPRLVVTCRHVSPREAARVLVRSTTPKHNHQQHPGQ                      
       :::::::::::::::::::::::::::::                               
CCDS31 AVAPRLVVTCRHVSPREAARVLVRSTTPKSVAIWGRVVFATQETCPYDIAVVSLEEDLDD
              370       380       390       400       410       420




398 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 15:28:32 2016 done: Tue Nov  8 15:28:32 2016
 Total Scan time:  2.430 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]