FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6693, 318 aa
  1>>>pF1KE6693 318 - 318 aa - 318 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2705+/-0.000964; mu= 10.7021+/- 0.057
 mean_var=112.8863+/-22.570, 0's: 0 Z-trim(108.8): 186  B-trim: 62 in 1/48
 Lambda= 0.120713
 statistics sampled from 10187 (10420) to 10187 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.697), E-opt: 0.2 (0.32), width:  16
 Scan time:  2.360

The best scores are:                                      opt bits E(32554)
CCDS14378.2 ASB12 gene_id:142689|Hs108|chrX        ( 318) 2111 378.6 3.6e-105
CCDS33416.1 ASB1 gene_id:51665|Hs108|chr2          ( 335)  582 112.3 5.3e-25


>>CCDS14378.2 ASB12 gene_id:142689|Hs108|chrX             (318 aa)
 initn: 2111 init1: 2111 opt: 2111  Z-score: 2001.7  bits: 378.6 E(32554): 3.6e-105
Smith-Waterman score: 2111; 100.0% identity (100.0% similar) in 318 aa overlap (1-318:1-318)

               10        20        30        40        50        60
pF1KE6 MRIVLQLAKMNLMDITKIFSLLQPDKEEEDTDTEEKQALNQAVYDNDSYTLDQLLRQERY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MRIVLQLAKMNLMDITKIFSLLQPDKEEEDTDTEEKQALNQAVYDNDSYTLDQLLRQERY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 KRFINSRSGWGVPGTPLRLAASYGHLSCLQVLLAHGADVDSLDVKAQTPLFTAVSHGHLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 KRFINSRSGWGVPGTPLRLAASYGHLSCLQVLLAHGADVDSLDVKAQTPLFTAVSHGHLD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 CVRVLLEAGASPGGSIYNNCSPVLTAARDGAVAILQELLDHGAEANVKAKLPVWASNIAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 CVRVLLEAGASPGGSIYNNCSPVLTAARDGAVAILQELLDHGAEANVKAKLPVWASNIAS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 CSGPLYLAAVYGHLDCFRLLLLHGADPDYNCTDQGLLARVPRPRTLLEICLHHNCEPEYI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 CSGPLYLAAVYGHLDCFRLLLLHGADPDYNCTDQGLLARVPRPRTLLEICLHHNCEPEYI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 QLLIDFGANIYLPSLSLDLTSQDDKGIALLLQARATPRSLLSQVRLVVRRALCQAGQPQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 QLLIDFGANIYLPSLSLDLTSQDDKGIALLLQARATPRSLLSQVRLVVRRALCQAGQPQA
              250       260       270       280       290       300

              310        
pF1KE6 INQLDIPPMLISYLKHQL
       ::::::::::::::::::
CCDS14 INQLDIPPMLISYLKHQL
              310        

>>CCDS33416.1 ASB1 gene_id:51665|Hs108|chr2               (335 aa)
 initn: 684 init1: 303 opt: 582  Z-score: 562.3  bits: 112.3 E(32554): 5.3e-25
Smith-Waterman score: 647; 39.8% identity (68.4% similar) in 304 aa overlap (35-317:37-335)

           10        20        30        40        50        60    
pF1KE6 LQLAKMNLMDITKIFSLLQPDKEEEDTDTEEKQALNQAVYDNDSYTLDQLLRQERYKRFI
                                     :   :..:.: .:  :: .::..: :.  :
CCDS33 PDGRAGPGSAGRNLKEWLREQFCDHPLEHCEDTRLHDAAYVGDLQTLRSLLQEESYRSRI
         10        20        30        40        50        60      

           70           80        90       100       110       120 
pF1KE6 NSRSGW--G-VPGTPLRLAASYGHLSCLQVLLAHGADVDSLDVKAQTPLFTAVSHGHLDC
       : .: :  : .: ::::.::. :: ::.. :. .::.:: .:::.:: :..:: .:::. 
CCDS33 NEKSVWCCGWLPCTPLRIAATAGHGSCVDFLIRKGAEVDLVDVKGQTALYVAVVNGHLES
         70        80        90       100       110       120      

             130       140       150       160       170           
pF1KE6 VRVLLEAGASPGGSIYNNCSPVLTAARDGAVAILQELLDHGAEANVKAKL-----PVWAS
       ...::::::.:.:: ..  .::  :.: : . ::. :. .::...:. .:     : .. 
CCDS33 TQILLEAGADPNGSRHHRSTPVYHASRVGRADILKALIRYGADVDVNHHLTPDVQPRFSR
        130       140       150       160       170       180      

        180          190       200       210           220         
pF1KE6 NIAS---CSGPLYLAAVYGHLDCFRLLLLHGADPDYNCTD----QGLLARVPRPRTLLEI
        ..:   :  :::..:.: .:.::::::: ::.::.::.     ::.      :  ... 
CCDS33 RLTSLVVC--PLYISAAYHNLQCFRLLLLAGANPDFNCNGPVNTQGFYR--GSPGCVMDA
        190         200       210       220       230         240  

     230       240       250        260            270       280   
pF1KE6 CLHHNCEPEYIQLLIDFGANIYLPSL-SLDLTSQ-----DDKGIALLLQARATPRSLLSQ
        :.:.::  ...::..::::. : .  ::   :.     : ... .. .::..::.::  
CCDS33 VLRHGCEAAFVSLLVEFGANLNLVKWESLGPESRGRRKVDPEALQVFKEARSVPRTLLCL
            250       260       270       280       290       300  

           290       300       310        
pF1KE6 VRLVVRRALCQAGQPQAINQLDIPPMLISYLKHQL
        :..::::: .  . . : .: .:  . ..: :. 
CCDS33 CRVAVRRALGKH-RLHLIPSLPLPDPIKKFLLHE 
            310        320       330      




318 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 15:27:58 2016 done: Tue Nov  8 15:27:58 2016
 Total Scan time:  2.360 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]