FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6692, 329 aa
  1>>>pF1KE6692 329 - 329 aa - 329 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9186+/-0.000616; mu= 14.8424+/- 0.038
 mean_var=93.3828+/-18.563, 0's: 0 Z-trim(114.1): 20  B-trim: 0 in 0/51
 Lambda= 0.132721
 statistics sampled from 14630 (14648) to 14630 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.772), E-opt: 0.2 (0.45), width:  16
 Scan time:  2.250

The best scores are:                                      opt bits E(32554)
CCDS13.1 B3GALT6 gene_id:126792|Hs108|chr1         ( 329) 2257 441.5 4.5e-124
CCDS1606.1 B3GALNT2 gene_id:148789|Hs108|chr1      ( 500)  296 66.1 6.7e-11


>>CCDS13.1 B3GALT6 gene_id:126792|Hs108|chr1              (329 aa)
 initn: 2257 init1: 2257 opt: 2257  Z-score: 2341.0  bits: 441.5 E(32554): 4.5e-124
Smith-Waterman score: 2257; 100.0% identity (100.0% similar) in 329 aa overlap (1-329:1-329)

               10        20        30        40        50        60
pF1KE6 MKLLRRAWRRRAALGLGTLALCGAALLYLARCAAEPGDPRAMSGRSPPPPAPARAAAFLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MKLLRRAWRRRAALGLGTLALCGAALLYLARCAAEPGDPRAMSGRSPPPPAPARAAAFLA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 VLVASAPRAAERRSVIRSTWLARRGAPGDVWARFAVGTAGLGAEERRALEREQARHGDLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VLVASAPRAAERRSVIRSTWLARRGAPGDVWARFAVGTAGLGAEERRALEREQARHGDLL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 LLPALRDAYENLTAKVLAMLAWLDEHVAFEFVLKADDDSFARLDALLAELRAREPARRRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LLPALRDAYENLTAKVLAMLAWLDEHVAFEFVLKADDDSFARLDALLAELRAREPARRRR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 LYWGFFSGRGRVKPGGRWREAAWQLCDYYLPYALGGGYVLSADLVHYLRLSRDYLRAWHS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LYWGFFSGRGRVKPGGRWREAAWQLCDYYLPYALGGGYVLSADLVHYLRLSRDYLRAWHS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 EDVSLGAWLAPVDVQREHDPRFDTEYRSRGCSNQYLVTHKQSLEDMLEKHATLAREGRLC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 EDVSLGAWLAPVDVQREHDPRFDTEYRSRGCSNQYLVTHKQSLEDMLEKHATLAREGRLC
              250       260       270       280       290       300

              310       320         
pF1KE6 KREVQLRLSYVYDWSAPPSQCCQRREGIP
       :::::::::::::::::::::::::::::
CCDS13 KREVQLRLSYVYDWSAPPSQCCQRREGIP
              310       320         

>>CCDS1606.1 B3GALNT2 gene_id:148789|Hs108|chr1           (500 aa)
 initn: 298 init1: 125 opt: 296  Z-score: 309.1  bits: 66.1 E(32554): 6.7e-11
Smith-Waterman score: 296; 28.3% identity (59.6% similar) in 198 aa overlap (104-301:305-496)

            80        90       100       110       120       130   
pF1KE6 SVIRSTWLARRGAPGDVWARFAVGTAGLGAEERRALEREQARHGDLLLLPALRDAYENLT
                                     ::   :..:.. . :.... .. :.:.:. 
CCDS16 FIYTIQEGDALLHNLHSRPQRLIDHIRNLHEEDALLKEESSIYDDIVFVDVV-DTYRNVP
          280       290       300       310       320        330   

           140       150       160       170       180       190   
pF1KE6 AKVLAMLAWLDEHVAFEFVLKADDDSFARLDALLAELRAREPARRRRLYWGFFSGRGRVK
       ::.: .  :  : ..:...::.::: .  :.:.. .. ...      ..:: :     : 
CCDS16 AKLLNFYRWTVETTSFNLLLKTDDDCYIDLEAVFNRI-VQKNLDGPNFWWGNFRLNWAVD
           340       350       360       370        380       390  

           200       210       220       230       240       250   
pF1KE6 PGGRWREAAWQLCDYYLPYALGGGYVLSADLVHYLRLSRDYLRAWHSEDVSLGAWLAPVD
         :.:.:  .     :  .: :.:::.: :.:..:  .   :.....::::.: :.: . 
CCDS16 RTGKWQELEYP-SPAYPAFACGSGYVISKDIVKWLASNSGRLKTYQGEDVSMGIWMAAIG
            400        410       420       430       440       450 

           260       270       280       290       300       310   
pF1KE6 VQREHDPRFDTEYRSRGCSNQYLVTHKQSLEDMLEKHATLAREGRLCKREVQLRLSYVYD
        .: .:  .  :   . : . .: . . :  .. :      : :  :.            
CCDS16 PKRYQDSLWLCE---KTCETGMLSSPQYSPWELTELWKLKERCGDPCRCQAR        
             460          470       480       490       500        

           320         
pF1KE6 WSAPPSQCCQRREGIP




329 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 15:27:28 2016 done: Tue Nov  8 15:27:28 2016
 Total Scan time:  2.250 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]