FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6691, 318 aa
  1>>>pF1KE6691 318 - 318 aa - 318 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7219+/-0.000983; mu= 13.4872+/- 0.059
 mean_var=67.9965+/-13.803, 0's: 0 Z-trim(104.1): 16  B-trim: 0 in 0/49
 Lambda= 0.155536
 statistics sampled from 7708 (7716) to 7708 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.618), E-opt: 0.2 (0.237), width:  16
 Scan time:  1.690

The best scores are:                                      opt bits E(32554)
CCDS14602.1 C1GALT1C1 gene_id:29071|Hs108|chrX     ( 318) 2168 495.6 2.1e-140
CCDS82442.1 C1GALT1C1L gene_id:728819|Hs108|chr2   ( 315) 1391 321.2 6.5e-88
CCDS5355.1 C1GALT1 gene_id:56913|Hs108|chr7        ( 363)  414 102.0 7.3e-22


>>CCDS14602.1 C1GALT1C1 gene_id:29071|Hs108|chrX          (318 aa)
 initn: 2168 init1: 2168 opt: 2168  Z-score: 2634.0  bits: 495.6 E(32554): 2.1e-140
Smith-Waterman score: 2168; 100.0% identity (100.0% similar) in 318 aa overlap (1-318:1-318)

               10        20        30        40        50        60
pF1KE6 MLSESSSFLKGVMLGSIFCALITMLGHIRIGHGNRMHHHEHHHLQAPNKEDILKISEDER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MLSESSSFLKGVMLGSIFCALITMLGHIRIGHGNRMHHHEHHHLQAPNKEDILKISEDER
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 MELSKSFRVYCIILVKPKDVSLWAAVKETWTKHCDKAEFFSSENVKVFESINMDTNDMWL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MELSKSFRVYCIILVKPKDVSLWAAVKETWTKHCDKAEFFSSENVKVFESINMDTNDMWL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 MMRKAYKYAFDKYRDQYNWFFLARPTTFAIIENLKYFLLKKDPSQPFYLGHTIKSGDLEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MMRKAYKYAFDKYRDQYNWFFLARPTTFAIIENLKYFLLKKDPSQPFYLGHTIKSGDLEY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 VGMEGGIVLSVESMKRLNSLLNIPEKCPEQGGMIWKISEDKQLAVCLKYAGVFAENAEDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 VGMEGGIVLSVESMKRLNSLLNIPEKCPEQGGMIWKISEDKQLAVCLKYAGVFAENAEDA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 DGKDVFNTKSVGLSIKEAMTYHPNQVVEGCCSDMAVTFNGLTPNQMHVMMYGVYRLRAFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 DGKDVFNTKSVGLSIKEAMTYHPNQVVEGCCSDMAVTFNGLTPNQMHVMMYGVYRLRAFG
              250       260       270       280       290       300

              310        
pF1KE6 HIFNDALVFLPPNGSDND
       ::::::::::::::::::
CCDS14 HIFNDALVFLPPNGSDND
              310        

>>CCDS82442.1 C1GALT1C1L gene_id:728819|Hs108|chr2        (315 aa)
 initn: 1373 init1: 569 opt: 1391  Z-score: 1691.8  bits: 321.2 E(32554): 6.5e-88
Smith-Waterman score: 1391; 63.9% identity (85.6% similar) in 319 aa overlap (1-318:1-315)

                10        20        30        40        50         
pF1KE6 MLSES-SSFLKGVMLGSIFCALITMLGHIRIGHGNRMHHHEHHHLQAPNKEDILKISEDE
       :.: : .::.::..::::  .::::.:.:.: : .. . ::::::. ::..:.:. :.  
CCDS82 MVSASGTSFFKGMLLGSISWVLITMFGQIHIRHRGQTQDHEHHHLRPPNRNDFLNTSKVI
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KE6 RMELSKSFRVYCIILVKPKDVSLWAAVKETWTKHCDKAEFFSSENVKVFESINMDTNDMW
        .:::::.::.:::. . .: : ::..::::::::::::.....: ..:   :...:: :
CCDS82 LLELSKSIRVFCIIFGESEDESYWAVLKETWTKHCDKAELYDTKNDNLF---NIESNDRW
               70        80        90       100          110       

     120       130       140       150       160       170         
pF1KE6 LMMRKAYKYAFDKYRDQYNWFFLARPTTFAIIENLKYFLLKKDPSQPFYLGHTIKSGDLE
       ..:: ::::.:.:: :.::::::: :::::.::::::.:. .: :::::::::.  ::::
CCDS82 VQMRTAYKYVFEKYGDNYNWFFLALPTTFAVIENLKYLLFTRDASQPFYLGHTVIFGDLE
       120       130       140       150       160       170       

     180       190       200       210       220       230         
pF1KE6 YVGMEGGIVLSVESMKRLNSLLNIPEKCPEQGGMIWKISEDKQLAVCLKYAGVFAENAED
       :: .::::::: : ::::: ::.  : : .:. .:::.:::::::.::::::: ::::::
CCDS82 YVTVEGGIVLSRELMKRLNRLLDNSETCADQS-VIWKLSEDKQLAICLKYAGVHAENAED
       180       190       200        210       220       230      

     240       250       260       270       280       290         
pF1KE6 ADGKDVFNTKSVGLSIKEAMTYHPNQVVEGCCSDMAVTFNGLTPNQMHVMMYGVYRLRAF
        .:.:::::: ..  :.::.. .:.:::::::::::.:::::::..:.:::::.::::::
CCDS82 YEGRDVFNTKPIAQLIEEALSNNPQQVVEGCCSDMAITFNGLTPQKMEVMMYGLYRLRAF
        240       250       260       270       280       290      

     300       310        
pF1KE6 GHIFNDALVFLPPNGSDND
       :: :::.:::::: ::.::
CCDS82 GHYFNDTLVFLPPVGSEND
        300       310     

>>CCDS5355.1 C1GALT1 gene_id:56913|Hs108|chr7             (363 aa)
 initn: 277 init1: 148 opt: 414  Z-score: 506.0  bits: 102.0 E(32554): 7.3e-22
Smith-Waterman score: 429; 26.7% identity (60.6% similar) in 330 aa overlap (7-303:11-333)

                   10        20          30        40        50    
pF1KE6     MLSESSSFLKGVMLGSIFCALI--TMLGHIRIGHGNRMHHHEHHHLQAPNKEDILK
                 .:: :  .: ..:. .   .::.    . : .:.  : . .  : .. :.
CCDS53 MASKSWLNFLTFLCGSAIGFLLCSQLFSILLGEKVDTQPNVLHNDPHARHSDDNGQNHLE
               10        20        30        40        50        60

                     60            70        80         90         
pF1KE6 IS----------EDERMELSKSF----RVYCIILVKPKDVSLWAA-VKETWTKHCDKAEF
        .          .::  ......    :. : ... :...   :  :: ::...:.:. :
CCDS53 GQMNFNADSSQHKDENTDIAENLYQKVRILCWVMTGPQNLEKKAKHVKATWAQRCNKVLF
               70        80        90       100       110       120

     100       110            120       130       140       150    
pF1KE6 FSSENVKVFESINMDTND-----MWLMMRKAYKYAFDKYRDQYNWFFLARPTTFAIIENL
       .:::. : : .... :..     .:  . ::..:. ..: .. .::. :   :..:..::
CCDS53 MSSEENKDFPAVGLKTKEGRDQLYWKTI-KAFQYVHEHYLEDADWFLKADDDTYVILDNL
              130       140        150       160       170         

          160       170        180       190       200       210   
pF1KE6 KYFLLKKDPSQPFYLGHTIKSGDLE-YVGMEGGIVLSVESMKRLNSLLNIPEKCPEQGGM
       ...: : :: .:.:.:. .:    . :..  .: ::: :..::. . ..  .:: .....
CCDS53 RWLLSKYDPEEPIYFGRRFKPYVKQGYMSGGAGYVLSKEALKRFVDAFKT-DKCTHSSSI
     180       190       200       210       220        230        

           220       230       240       250                 260   
pF1KE6 IWKISEDKQLAVCLKYAGVFAENAEDADGKDVFNTKSVGLSIKEAM----------TYHP
            ::  :. :..  .: : ...:. ::..:.       . ...          .:.:
CCDS53 -----EDLALGRCMEIMNVEAGDSRDTIGKETFHPFVPEHHLIKGYLPRTFWYWNYNYYP
           240       250       260       270       280       290   

           270       280       290       300       310             
pF1KE6 NQVVEGCCSDMAVTFNGLTPNQMHVMMYGVYRLRAFGHIFNDALVFLPPNGSDND     
            :::::.::.:. .  . :. . : ::.:: .:...                    
CCDS53 PVEGPGCCSDLAVSFHYVDSTTMYELEYLVYHLRPYGYLYRYQPTLPERILKEISQANKN
           300       310       320       330       340       350   

CCDS53 EDTKVKLGNP
           360   




318 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 15:26:54 2016 done: Tue Nov  8 15:26:55 2016
 Total Scan time:  1.690 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]