FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6690, 299 aa
  1>>>pF1KE6690 299 - 299 aa - 299 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9775+/-0.000794; mu= 12.9892+/- 0.048
 mean_var=86.5642+/-17.754, 0's: 0 Z-trim(109.3): 8  B-trim: 487 in 1/51
 Lambda= 0.137849
 statistics sampled from 10801 (10806) to 10801 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.702), E-opt: 0.2 (0.332), width:  16
 Scan time:  2.230

The best scores are:                                      opt bits E(32554)
CCDS8467.1 HYLS1 gene_id:219844|Hs108|chr11        ( 299) 2037 414.6 4.5e-116


>>CCDS8467.1 HYLS1 gene_id:219844|Hs108|chr11             (299 aa)
 initn: 2037 init1: 2037 opt: 2037  Z-score: 2197.4  bits: 414.6 E(32554): 4.5e-116
Smith-Waterman score: 2037; 100.0% identity (100.0% similar) in 299 aa overlap (1-299:1-299)

               10        20        30        40        50        60
pF1KE6 MEELLPDGQIWANMDPEERMLAAATAFTHICAGQGEGDVRREAQSIQYDPYSKASVAPGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 MEELLPDGQIWANMDPEERMLAAATAFTHICAGQGEGDVRREAQSIQYDPYSKASVAPGK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 RPALPVQLQYPHVESNVPSETVSEASQRLRKPVMKRKVLRRKPDGEVLVTDESIISESES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 RPALPVQLQYPHVESNVPSETVSEASQRLRKPVMKRKVLRRKPDGEVLVTDESIISESES
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 GTENDQDLWDLRQRLMNVQFQEDKESSFDVSQKFNLPHEYQGISQDQLICSLQREGMGSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 GTENDQDLWDLRQRLMNVQFQEDKESSFDVSQKFNLPHEYQGISQDQLICSLQREGMGSP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 AYEQDLIVASRPKSFILPKLDQLSRNRGKTDRVARYFEYKRDWDSIRLPGEDHRKELRWG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 AYEQDLIVASRPKSFILPKLDQLSRNRGKTDRVARYFEYKRDWDSIRLPGEDHRKELRWG
              190       200       210       220       230       240

              250       260       270       280       290         
pF1KE6 VREQMLCRAEPQSKPQHIYVPNNYLVPTEKKRSALRWGVRCDLANGVIPRKLPFPLSPS
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 VREQMLCRAEPQSKPQHIYVPNNYLVPTEKKRSALRWGVRCDLANGVIPRKLPFPLSPS
              250       260       270       280       290         




299 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 15:26:23 2016 done: Tue Nov  8 15:26:24 2016
 Total Scan time:  2.230 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]